EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00021655 (Gene tree)
Gene ID: -
Gene Symbol: Y48A5A.1
Alias: -
Full Name: Protein SHQ1 homolog
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 4170 bases
Position: chrIV:1965481-1969650
Accession: Q9TYM6
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y48A5A	SHQ1	PF04925.15	6.2e-56	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y48A5A.1	-	1471	NM_067749	Y48A5A.1	431 (aa)	NP_500150	Q9TYM6

Gene Model

Click here to download WBGene00021655's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00021655's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00021655	Y48A5A.1	92	35.225	ENSG00000144736	SHQ1	96	45.833	Homo_sapiens
WBGene00021655	Y48A5A.1	92	31.490	ENSAPOG00000000397	shq1	69	31.336	Acanthochromis_polyacanthus
WBGene00021655	Y48A5A.1	92	33.890	ENSAMEG00000015140	SHQ1	75	34.240	Ailuropoda_melanoleuca
WBGene00021655	Y48A5A.1	92	30.244	ENSACIG00000021249	shq1	70	30.394	Amphilophus_citrinellus
WBGene00021655	Y48A5A.1	92	31.490	ENSAOCG00000023311	shq1	69	31.336	Amphiprion_ocellaris
WBGene00021655	Y48A5A.1	92	31.250	ENSAPEG00000021686	shq1	69	31.106	Amphiprion_percula
WBGene00021655	Y48A5A.1	91	30.843	ENSATEG00000008475	shq1	70	30.734	Anabas_testudineus
WBGene00021655	Y48A5A.1	92	30.788	ENSAPLG00000013926	SHQ1	85	30.856	Anas_platyrhynchos
WBGene00021655	Y48A5A.1	97	33.258	ENSACAG00000014809	SHQ1	64	32.812	Anolis_carolinensis
WBGene00021655	Y48A5A.1	92	35.225	ENSANAG00000029241	SHQ1	75	34.247	Aotus_nancymaae
WBGene00021655	Y48A5A.1	83	30.376	ENSAMXG00000043822	shq1	65	30.645	Astyanax_mexicanus
WBGene00021655	Y48A5A.1	88	34.074	ENSBTAG00000005436	SHQ1	74	33.560	Bos_taurus
WBGene00021655	Y48A5A.1	92	34.752	ENSCJAG00000015131	SHQ1	75	33.636	Callithrix_jacchus
WBGene00021655	Y48A5A.1	88	33.582	ENSCAFG00000006434	SHQ1	74	33.333	Canis_familiaris
WBGene00021655	Y48A5A.1	88	33.831	ENSCAFG00020016743	SHQ1	74	33.560	Canis_lupus_dingo
WBGene00021655	Y48A5A.1	88	34.568	ENSCHIG00000012271	SHQ1	67	34.014	Capra_hircus
WBGene00021655	Y48A5A.1	92	33.413	ENSTSYG00000014439	SHQ1	75	34.096	Carlito_syrichta
WBGene00021655	Y48A5A.1	80	33.811	ENSCAPG00000009343	SHQ1	63	43.210	Cavia_aperea
WBGene00021655	Y48A5A.1	92	33.886	ENSCPOG00000011443	SHQ1	73	34.773	Cavia_porcellus
WBGene00021655	Y48A5A.1	92	31.175	ENSCCAG00000027080	SHQ1	57	34.936	Cebus_capucinus
WBGene00021655	Y48A5A.1	88	30.311	ENSCCAG00000036087	-	73	30.353	Cebus_capucinus
WBGene00021655	Y48A5A.1	92	35.461	ENSCATG00000041238	SHQ1	74	34.018	Cercocebus_atys
WBGene00021655	Y48A5A.1	92	34.048	ENSCLAG00000004206	SHQ1	74	34.467	Chinchilla_lanigera
WBGene00021655	Y48A5A.1	71	33.735	ENSCSAG00000011514	SHQ1	61	34.091	Chlorocebus_sabaeus
WBGene00021655	Y48A5A.1	97	31.532	ENSCPBG00000006441	SHQ1	71	31.532	Chrysemys_picta_bellii
WBGene00021655	Y48A5A.1	90	32.997	ENSCING00000008013	-	94	32.084	Ciona_intestinalis
WBGene00021655	Y48A5A.1	90	33.586	ENSCSAVG00000002332	-	97	32.243	Ciona_savignyi
WBGene00021655	Y48A5A.1	92	35.714	ENSCANG00000039295	SHQ1	75	34.247	Colobus_angolensis_palliatus
WBGene00021655	Y48A5A.1	97	33.557	ENSCGRG00001012583	Shq1	76	32.658	Cricetulus_griseus_chok1gshd
WBGene00021655	Y48A5A.1	97	33.557	ENSCGRG00000009849	Shq1	76	32.658	Cricetulus_griseus_crigri
WBGene00021655	Y48A5A.1	90	31.683	ENSCSEG00000007829	shq1	68	31.579	Cynoglossus_semilaevis
WBGene00021655	Y48A5A.1	97	31.279	ENSCVAG00000020049	shq1	73	31.106	Cyprinodon_variegatus
WBGene00021655	Y48A5A.1	92	33.333	ENSDNOG00000033937	SHQ1	75	33.787	Dasypus_novemcinctus
WBGene00021655	Y48A5A.1	92	34.606	ENSEASG00005002237	SHQ1	75	34.773	Equus_asinus_asinus
WBGene00021655	Y48A5A.1	92	34.606	ENSECAG00000015673	SHQ1	73	34.773	Equus_caballus
WBGene00021655	Y48A5A.1	92	34.198	ENSEEUG00000010568	SHQ1	75	34.234	Erinaceus_europaeus
WBGene00021655	Y48A5A.1	91	31.796	ENSELUG00000003476	shq1	82	30.769	Esox_lucius
WBGene00021655	Y48A5A.1	92	35.071	ENSFCAG00000012781	SHQ1	76	34.685	Felis_catus
WBGene00021655	Y48A5A.1	92	34.442	ENSFALG00000013428	SHQ1	71	34.529	Ficedula_albicollis
WBGene00021655	Y48A5A.1	92	36.643	ENSFDAG00000005595	SHQ1	67	34.831	Fukomys_damarensis
WBGene00021655	Y48A5A.1	92	30.456	ENSFHEG00000017552	shq1	72	30.805	Fundulus_heteroclitus
WBGene00021655	Y48A5A.1	88	31.841	ENSGMOG00000007350	shq1	99	31.566	Gadus_morhua
WBGene00021655	Y48A5A.1	97	34.009	ENSGALG00000007798	SHQ1	70	34.086	Gallus_gallus
WBGene00021655	Y48A5A.1	91	33.668	ENSGACG00000011797	shq1	100	33.584	Gasterosteus_aculeatus
WBGene00021655	Y48A5A.1	92	35.225	ENSGGOG00000034818	SHQ1	74	34.018	Gorilla_gorilla
WBGene00021655	Y48A5A.1	92	35.377	ENSHGLG00000003637	SHQ1	67	35.426	Heterocephalus_glaber_female
WBGene00021655	Y48A5A.1	92	35.377	ENSHGLG00100011957	SHQ1	68	35.426	Heterocephalus_glaber_male
WBGene00021655	Y48A5A.1	97	31.075	ENSHCOG00000010799	shq1	72	31.034	Hippocampus_comes
WBGene00021655	Y48A5A.1	97	31.663	ENSIPUG00000001247	shq1	73	31.651	Ictalurus_punctatus
WBGene00021655	Y48A5A.1	92	35.000	ENSSTOG00000010043	SHQ1	79	34.978	Ictidomys_tridecemlineatus
WBGene00021655	Y48A5A.1	92	33.097	ENSJJAG00000017611	Shq1	76	32.731	Jaculus_jaculus
WBGene00021655	Y48A5A.1	97	31.828	ENSLACG00000014243	SHQ1	65	31.663	Latimeria_chalumnae
WBGene00021655	Y48A5A.1	88	33.663	ENSLOCG00000009970	shq1	76	31.416	Lepisosteus_oculatus
WBGene00021655	Y48A5A.1	92	35.697	ENSMFAG00000039148	SHQ1	74	34.247	Macaca_fascicularis
WBGene00021655	Y48A5A.1	80	34.417	ENSMMUG00000009571	SHQ1	68	32.984	Macaca_mulatta
WBGene00021655	Y48A5A.1	92	35.697	ENSMNEG00000032667	SHQ1	74	34.247	Macaca_nemestrina
WBGene00021655	Y48A5A.1	92	35.697	ENSMLEG00000038493	SHQ1	74	34.247	Mandrillus_leucophaeus
WBGene00021655	Y48A5A.1	97	34.694	ENSMGAG00000009640	SHQ1	71	34.773	Meleagris_gallopavo
WBGene00021655	Y48A5A.1	97	33.781	ENSMAUG00000022030	Shq1	76	32.883	Mesocricetus_auratus
WBGene00021655	Y48A5A.1	95	32.874	ENSMICG00000009224	SHQ1	74	33.710	Microcebus_murinus
WBGene00021655	Y48A5A.1	97	34.004	ENSMOCG00000017836	Shq1	77	33.108	Microtus_ochrogaster
WBGene00021655	Y48A5A.1	91	30.049	ENSMMOG00000010569	shq1	72	30.162	Mola_mola
WBGene00021655	Y48A5A.1	97	32.438	ENSMODG00000003926	SHQ1	78	31.390	Monodelphis_domestica
WBGene00021655	Y48A5A.1	92	31.100	ENSMALG00000008870	shq1	71	30.485	Monopterus_albus
WBGene00021655	Y48A5A.1	97	32.731	MGP_CAROLIEiJ_G0028689	Shq1	76	32.658	Mus_caroli
WBGene00021655	Y48A5A.1	97	32.957	ENSMUSG00000035378	Shq1	76	32.658	Mus_musculus
WBGene00021655	Y48A5A.1	97	33.860	MGP_PahariEiJ_G0022440	Shq1	76	33.634	Mus_pahari
WBGene00021655	Y48A5A.1	97	33.333	MGP_SPRETEiJ_G0029717	Shq1	76	32.511	Mus_spretus
WBGene00021655	Y48A5A.1	95	33.641	ENSMPUG00000017006	SHQ1	73	34.615	Mustela_putorius_furo
WBGene00021655	Y48A5A.1	86	31.990	ENSMLUG00000013539	SHQ1	73	31.990	Myotis_lucifugus
WBGene00021655	Y48A5A.1	92	32.432	ENSNGAG00000023317	Shq1	75	32.787	Nannospalax_galili
WBGene00021655	Y48A5A.1	92	35.225	ENSNLEG00000002731	SHQ1	74	34.247	Nomascus_leucogenys
WBGene00021655	Y48A5A.1	61	38.596	ENSOPRG00000013963	-	73	38.596	Ochotona_princeps
WBGene00021655	Y48A5A.1	92	33.886	ENSODEG00000009192	SHQ1	79	33.409	Octodon_degus
WBGene00021655	Y48A5A.1	92	33.492	ENSOCUG00000016695	SHQ1	74	33.408	Oryctolagus_cuniculus
WBGene00021655	Y48A5A.1	91	30.508	ENSORLG00000023538	shq1	77	30.137	Oryzias_latipes
WBGene00021655	Y48A5A.1	91	31.235	ENSORLG00020003697	shq1	76	30.822	Oryzias_latipes_hni
WBGene00021655	Y48A5A.1	92	30.288	ENSOMEG00000001225	shq1	76	30.137	Oryzias_melastigma
WBGene00021655	Y48A5A.1	92	32.333	ENSOGAG00000003898	SHQ1	76	32.671	Otolemur_garnettii
WBGene00021655	Y48A5A.1	92	32.944	ENSOARG00000009547	SHQ1	75	32.889	Ovis_aries
WBGene00021655	Y48A5A.1	56	30.435	ENSPPAG00000043263	-	51	31.387	Pan_paniscus
WBGene00021655	Y48A5A.1	92	35.225	ENSPPAG00000027714	SHQ1	74	34.018	Pan_paniscus
WBGene00021655	Y48A5A.1	92	35.071	ENSPPRG00000004769	SHQ1	75	34.685	Panthera_pardus
WBGene00021655	Y48A5A.1	92	34.368	ENSPTIG00000011478	SHQ1	74	33.257	Panthera_tigris_altaica
WBGene00021655	Y48A5A.1	92	35.225	ENSPTRG00000015106	SHQ1	74	34.018	Pan_troglodytes
WBGene00021655	Y48A5A.1	56	30.833	ENSPTRG00000048303	-	50	31.801	Pan_troglodytes
WBGene00021655	Y48A5A.1	92	35.252	ENSPANG00000002881	SHQ1	74	34.475	Papio_anubis
WBGene00021655	Y48A5A.1	97	33.867	ENSPKIG00000021517	shq1	77	32.735	Paramormyrops_kingsleyae
WBGene00021655	Y48A5A.1	97	32.444	ENSPSIG00000005536	SHQ1	71	32.215	Pelodiscus_sinensis
WBGene00021655	Y48A5A.1	92	30.238	ENSPMGG00000008838	shq1	73	30.524	Periophthalmus_magnuspinnatus
WBGene00021655	Y48A5A.1	88	34.483	ENSPEMG00000000251	Shq1	76	33.108	Peromyscus_maniculatus_bairdii
WBGene00021655	Y48A5A.1	95	31.050	ENSPMAG00000005372	shq1	95	31.034	Petromyzon_marinus
WBGene00021655	Y48A5A.1	92	35.238	ENSPPYG00000013717	SHQ1	74	33.790	Pongo_abelii
WBGene00021655	Y48A5A.1	92	34.198	ENSPCAG00000009035	SHQ1	75	33.032	Procavia_capensis
WBGene00021655	Y48A5A.1	92	32.394	ENSPCOG00000008415	SHQ1	74	33.108	Propithecus_coquereli
WBGene00021655	Y48A5A.1	92	34.204	ENSPVAG00000017392	SHQ1	75	34.529	Pteropus_vampyrus
WBGene00021655	Y48A5A.1	97	34.009	ENSRNOG00000005433	Shq1	72	33.559	Rattus_norvegicus
WBGene00021655	Y48A5A.1	92	35.835	ENSRBIG00000026280	SHQ1	74	34.112	Rhinopithecus_bieti
WBGene00021655	Y48A5A.1	92	35.697	ENSRROG00000034126	SHQ1	75	34.018	Rhinopithecus_roxellana
WBGene00021655	Y48A5A.1	92	32.134	ENSSBOG00000021038	SHQ1	73	32.045	Saimiri_boliviensis_boliviensis
WBGene00021655	Y48A5A.1	97	31.920	ENSSHAG00000015077	SHQ1	76	31.081	Sarcophilus_harrisii
WBGene00021655	Y48A5A.1	99	31.757	ENSSFOG00015016241	shq1	79	31.293	Scleropages_formosus
WBGene00021655	Y48A5A.1	90	31.618	ENSSMAG00000016151	shq1	70	31.881	Scophthalmus_maximus
WBGene00021655	Y48A5A.1	92	31.010	ENSSDUG00000011986	shq1	69	30.876	Seriola_dumerili
WBGene00021655	Y48A5A.1	92	30.318	ENSSLDG00000013908	shq1	69	31.323	Seriola_lalandi_dorsalis
WBGene00021655	Y48A5A.1	74	32.258	ENSSARG00000007119	SHQ1	59	30.588	Sorex_araneus
WBGene00021655	Y48A5A.1	76	32.022	ENSSPUG00000011526	-	56	33.441	Sphenodon_punctatus
WBGene00021655	Y48A5A.1	92	34.515	ENSSSCG00000011518	SHQ1	75	34.831	Sus_scrofa
WBGene00021655	Y48A5A.1	90	32.697	ENSTGUG00000009933	SHQ1	76	31.849	Taeniopygia_guttata
WBGene00021655	Y48A5A.1	97	33.557	ENSTTRG00000005320	SHQ1	75	33.408	Tursiops_truncatus
WBGene00021655	Y48A5A.1	95	35.024	ENSUMAG00000024031	SHQ1	73	35.613	Ursus_maritimus
WBGene00021655	Y48A5A.1	53	35.484	ENSVPAG00000004880	SHQ1	56	34.951	Vicugna_pacos
WBGene00021655	Y48A5A.1	88	33.582	ENSVVUG00000013906	SHQ1	74	33.333	Vulpes_vulpes
WBGene00021655	Y48A5A.1	97	34.169	ENSXETG00000032215	shq1	70	34.325	Xenopus_tropicalis