EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: WBGene00021938 (Gene tree)
Gene ID: -
Gene Symbol: Y55F3BR.1
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 7120 bases
Position: chrIV:874791-881910
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y55F3BR	DEAD	PF00270.29	1.1e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y55F3BR.1	-	2453	NM_067603	Y55F3BR.1	728 (aa)	NP_500004	Q9N341

Gene Model

Click here to download WBGene00021938's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00021938's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
WBGene00021938	Y55F3BR.1	57	33.871	WBGene00022029	Y65B4A.6	87	33.871
WBGene00021938	Y55F3BR.1	53	42.373	WBGene00006888	vbh-1	54	40.984
WBGene00021938	Y55F3BR.1	62	32.468	WBGene00011032	R05D11.4	62	32.468
WBGene00021938	Y55F3BR.1	57	32.258	WBGene00018007	F33D11.10	87	32.258
WBGene00021938	Y55F3BR.1	55	40.678	WBGene00019219	H20J04.4	73	40.678
WBGene00021938	Y55F3BR.1	54	43.548	WBGene00017162	ddx-23	50	41.538

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00021938	Y55F3BR.1	98	47.973	ENSG00000079785	DDX1	98	47.973	Homo_sapiens
WBGene00021938	Y55F3BR.1	98	47.638	ENSAPOG00000003166	ddx1	98	47.638	Acanthochromis_polyacanthus
WBGene00021938	Y55F3BR.1	98	47.376	ENSAMEG00000001071	DDX1	98	47.376	Ailuropoda_melanoleuca
WBGene00021938	Y55F3BR.1	87	47.141	ENSACIG00000017422	ddx1	97	47.450	Amphilophus_citrinellus
WBGene00021938	Y55F3BR.1	89	46.716	ENSAOCG00000015436	ddx1	95	47.377	Amphiprion_ocellaris
WBGene00021938	Y55F3BR.1	98	47.703	ENSAPEG00000007699	ddx1	98	47.703	Amphiprion_percula
WBGene00021938	Y55F3BR.1	96	46.648	ENSATEG00000003965	ddx1	99	46.648	Anabas_testudineus
WBGene00021938	Y55F3BR.1	98	47.312	ENSAPLG00000011093	DDX1	98	47.312	Anas_platyrhynchos
WBGene00021938	Y55F3BR.1	95	48.451	ENSACAG00000011036	DDX1	99	48.451	Anolis_carolinensis
WBGene00021938	Y55F3BR.1	98	47.568	ENSANAG00000037912	DDX1	98	47.568	Aotus_nancymaae
WBGene00021938	Y55F3BR.1	98	48.103	ENSACLG00000008850	ddx1	97	47.988	Astatotilapia_calliptera
WBGene00021938	Y55F3BR.1	98	46.676	ENSAMXG00000002100	ddx1	98	46.676	Astyanax_mexicanus
WBGene00021938	Y55F3BR.1	98	47.568	ENSBTAG00000009906	DDX1	98	47.568	Bos_taurus
WBGene00021938	Y55F3BR.1	98	47.703	ENSCJAG00000007076	DDX1	98	47.703	Callithrix_jacchus
WBGene00021938	Y55F3BR.1	98	47.715	ENSCAFG00000003686	DDX1	98	47.715	Canis_familiaris
WBGene00021938	Y55F3BR.1	98	47.715	ENSCAFG00020026083	DDX1	98	47.715	Canis_lupus_dingo
WBGene00021938	Y55F3BR.1	98	47.568	ENSCHIG00000011046	DDX1	98	47.568	Capra_hircus
WBGene00021938	Y55F3BR.1	95	37.183	ENSTSYG00000037396	-	95	37.322	Carlito_syrichta
WBGene00021938	Y55F3BR.1	98	47.581	ENSTSYG00000002477	-	100	46.056	Carlito_syrichta
WBGene00021938	Y55F3BR.1	85	40.435	ENSCAPG00000008906	-	91	40.435	Cavia_aperea
WBGene00021938	Y55F3BR.1	69	42.940	ENSCPOG00000032467	-	99	42.940	Cavia_porcellus
WBGene00021938	Y55F3BR.1	85	47.393	ENSCPOG00000009816	-	92	47.393	Cavia_porcellus
WBGene00021938	Y55F3BR.1	98	47.838	ENSCCAG00000030085	DDX1	98	47.838	Cebus_capucinus
WBGene00021938	Y55F3BR.1	98	47.973	ENSCATG00000033924	DDX1	98	47.973	Cercocebus_atys
WBGene00021938	Y55F3BR.1	98	47.177	ENSCLAG00000005434	DDX1	98	47.177	Chinchilla_lanigera
WBGene00021938	Y55F3BR.1	98	47.973	ENSCSAG00000007883	DDX1	98	47.973	Chlorocebus_sabaeus
WBGene00021938	Y55F3BR.1	60	58.333	ENSCHOG00000002171	DDX1	60	58.333	Choloepus_hoffmanni
WBGene00021938	Y55F3BR.1	98	46.429	ENSCPBG00000013330	DDX1	99	47.310	Chrysemys_picta_bellii
WBGene00021938	Y55F3BR.1	98	44.640	ENSCING00000001176	-	98	44.640	Ciona_intestinalis
WBGene00021938	Y55F3BR.1	99	42.141	ENSCSAVG00000003028	-	99	42.141	Ciona_savignyi
WBGene00021938	Y55F3BR.1	98	47.973	ENSCANG00000031530	DDX1	100	46.176	Colobus_angolensis_palliatus
WBGene00021938	Y55F3BR.1	98	47.446	ENSCGRG00001013025	Ddx1	98	47.432	Cricetulus_griseus_chok1gshd
WBGene00021938	Y55F3BR.1	98	47.446	ENSCGRG00000000676	Ddx1	98	47.432	Cricetulus_griseus_crigri
WBGene00021938	Y55F3BR.1	98	47.534	ENSCSEG00000002630	ddx1	98	47.534	Cynoglossus_semilaevis
WBGene00021938	Y55F3BR.1	98	47.411	ENSCVAG00000020927	ddx1	98	47.411	Cyprinodon_variegatus
WBGene00021938	Y55F3BR.1	98	47.011	ENSDARG00000032117	ddx1	98	47.011	Danio_rerio
WBGene00021938	Y55F3BR.1	98	47.432	ENSDNOG00000006905	DDX1	98	47.432	Dasypus_novemcinctus
WBGene00021938	Y55F3BR.1	98	47.312	ENSDORG00000012847	Ddx1	98	47.312	Dipodomys_ordii
WBGene00021938	Y55F3BR.1	98	46.512	FBgn0015075	Ddx1	99	46.785	Drosophila_melanogaster
WBGene00021938	Y55F3BR.1	90	51.500	ENSETEG00000014259	DDX1	89	51.500	Echinops_telfairi
WBGene00021938	Y55F3BR.1	60	49.330	ENSEBUG00000009800	-	94	49.330	Eptatretus_burgeri
WBGene00021938	Y55F3BR.1	98	47.581	ENSEASG00005009335	DDX1	90	47.581	Equus_asinus_asinus
WBGene00021938	Y55F3BR.1	93	47.504	ENSECAG00000016396	DDX1	98	47.504	Equus_caballus
WBGene00021938	Y55F3BR.1	86	45.962	ENSEEUG00000001606	DDX1	87	45.962	Erinaceus_europaeus
WBGene00021938	Y55F3BR.1	98	47.011	ENSELUG00000006743	ddx1	98	47.011	Esox_lucius
WBGene00021938	Y55F3BR.1	98	47.703	ENSFCAG00000004680	DDX1	98	47.703	Felis_catus
WBGene00021938	Y55F3BR.1	98	47.432	ENSFALG00000008696	DDX1	98	47.432	Ficedula_albicollis
WBGene00021938	Y55F3BR.1	98	47.043	ENSFDAG00000021305	DDX1	98	47.043	Fukomys_damarensis
WBGene00021938	Y55F3BR.1	98	47.908	ENSFHEG00000008444	ddx1	98	47.908	Fundulus_heteroclitus
WBGene00021938	Y55F3BR.1	98	45.822	ENSGMOG00000011300	ddx1	98	45.822	Gadus_morhua
WBGene00021938	Y55F3BR.1	98	47.703	ENSGALG00000016461	DDX1	98	47.703	Gallus_gallus
WBGene00021938	Y55F3BR.1	98	47.490	ENSGAFG00000004706	ddx1	98	47.490	Gambusia_affinis
WBGene00021938	Y55F3BR.1	98	47.083	ENSGACG00000011162	ddx1	98	47.083	Gasterosteus_aculeatus
WBGene00021938	Y55F3BR.1	98	48.108	ENSGAGG00000021020	DDX1	98	48.108	Gopherus_agassizii
WBGene00021938	Y55F3BR.1	98	47.973	ENSGGOG00000012482	DDX1	98	47.973	Gorilla_gorilla
WBGene00021938	Y55F3BR.1	98	48.365	ENSHBUG00000014069	ddx1	98	48.309	Haplochromis_burtoni
WBGene00021938	Y55F3BR.1	98	47.177	ENSHGLG00000000801	DDX1	98	47.177	Heterocephalus_glaber_female
WBGene00021938	Y55F3BR.1	98	47.019	ENSHGLG00100000711	DDX1	98	47.019	Heterocephalus_glaber_male
WBGene00021938	Y55F3BR.1	98	46.947	ENSHCOG00000011492	ddx1	94	46.947	Hippocampus_comes
WBGene00021938	Y55F3BR.1	98	46.667	ENSIPUG00000003494	ddx1	98	46.875	Ictalurus_punctatus
WBGene00021938	Y55F3BR.1	98	47.154	ENSSTOG00000003977	DDX1	98	47.154	Ictidomys_tridecemlineatus
WBGene00021938	Y55F3BR.1	81	47.603	ENSJJAG00000013315	Ddx1	94	47.603	Jaculus_jaculus
WBGene00021938	Y55F3BR.1	98	47.908	ENSKMAG00000011340	ddx1	98	47.908	Kryptolebias_marmoratus
WBGene00021938	Y55F3BR.1	87	46.285	ENSLBEG00000008692	ddx1	97	46.285	Labrus_bergylta
WBGene00021938	Y55F3BR.1	98	46.467	ENSLACG00000010529	DDX1	98	46.467	Latimeria_chalumnae
WBGene00021938	Y55F3BR.1	98	46.008	ENSLOCG00000016473	ddx1	97	46.008	Lepisosteus_oculatus
WBGene00021938	Y55F3BR.1	98	47.490	ENSLAFG00000002213	DDX1	98	47.490	Loxodonta_africana
WBGene00021938	Y55F3BR.1	98	47.973	ENSMFAG00000033987	DDX1	100	46.034	Macaca_fascicularis
WBGene00021938	Y55F3BR.1	98	47.973	ENSMMUG00000023437	DDX1	100	46.176	Macaca_mulatta
WBGene00021938	Y55F3BR.1	98	47.973	ENSMNEG00000029189	DDX1	100	46.034	Macaca_nemestrina
WBGene00021938	Y55F3BR.1	98	47.973	ENSMLEG00000030787	DDX1	98	47.973	Mandrillus_leucophaeus
WBGene00021938	Y55F3BR.1	98	47.503	ENSMAMG00000015916	ddx1	98	47.503	Mastacembelus_armatus
WBGene00021938	Y55F3BR.1	98	48.238	ENSMZEG00005015207	ddx1	97	48.142	Maylandia_zebra
WBGene00021938	Y55F3BR.1	98	44.973	ENSMGAG00000014025	DDX1	98	44.973	Meleagris_gallopavo
WBGene00021938	Y55F3BR.1	61	58.182	ENSMAUG00000016156	Ddx1	97	58.182	Mesocricetus_auratus
WBGene00021938	Y55F3BR.1	98	47.849	ENSMICG00000001023	DDX1	98	47.849	Microcebus_murinus
WBGene00021938	Y55F3BR.1	98	47.581	ENSMOCG00000000257	Ddx1	98	47.581	Microtus_ochrogaster
WBGene00021938	Y55F3BR.1	87	47.214	ENSMMOG00000015397	ddx1	97	47.214	Mola_mola
WBGene00021938	Y55F3BR.1	98	46.947	ENSMODG00000010275	DDX1	98	46.947	Monodelphis_domestica
WBGene00021938	Y55F3BR.1	98	46.964	ENSMALG00000016409	ddx1	98	46.964	Monopterus_albus
WBGene00021938	Y55F3BR.1	98	47.581	MGP_CAROLIEiJ_G0017622	Ddx1	98	47.568	Mus_caroli
WBGene00021938	Y55F3BR.1	98	47.432	ENSMUSG00000037149	Ddx1	99	47.449	Mus_musculus
WBGene00021938	Y55F3BR.1	98	47.581	MGP_PahariEiJ_G0029378	Ddx1	98	47.581	Mus_pahari
WBGene00021938	Y55F3BR.1	98	47.432	MGP_SPRETEiJ_G0018464	Ddx1	98	47.432	Mus_spretus
WBGene00021938	Y55F3BR.1	98	47.446	ENSMPUG00000013606	DDX1	98	47.446	Mustela_putorius_furo
WBGene00021938	Y55F3BR.1	98	47.226	ENSMLUG00000003027	DDX1	96	47.226	Myotis_lucifugus
WBGene00021938	Y55F3BR.1	98	47.290	ENSNGAG00000015783	Ddx1	98	47.290	Nannospalax_galili
WBGene00021938	Y55F3BR.1	78	46.048	ENSNBRG00000020677	ddx1	93	46.048	Neolamprologus_brichardi
WBGene00021938	Y55F3BR.1	98	47.973	ENSNLEG00000014417	DDX1	98	47.973	Nomascus_leucogenys
WBGene00021938	Y55F3BR.1	98	45.232	ENSMEUG00000008254	DDX1	98	45.232	Notamacropus_eugenii
WBGene00021938	Y55F3BR.1	54	49.500	ENSOPRG00000004290	DDX1	54	49.500	Ochotona_princeps
WBGene00021938	Y55F3BR.1	98	47.312	ENSODEG00000000569	DDX1	98	47.312	Octodon_degus
WBGene00021938	Y55F3BR.1	98	48.248	ENSONIG00000000513	ddx1	98	48.248	Oreochromis_niloticus
WBGene00021938	Y55F3BR.1	75	44.920	ENSOANG00000005450	DDX1	99	44.920	Ornithorhynchus_anatinus
WBGene00021938	Y55F3BR.1	98	47.581	ENSOCUG00000007010	DDX1	98	47.581	Oryctolagus_cuniculus
WBGene00021938	Y55F3BR.1	98	47.354	ENSORLG00000016709	ddx1	98	47.354	Oryzias_latipes
WBGene00021938	Y55F3BR.1	98	46.849	ENSORLG00020003290	ddx1	99	47.133	Oryzias_latipes_hni
WBGene00021938	Y55F3BR.1	98	47.083	ENSORLG00015022438	ddx1	98	47.083	Oryzias_latipes_hsok
WBGene00021938	Y55F3BR.1	98	43.716	ENSOMEG00000017620	ddx1	98	43.716	Oryzias_melastigma
WBGene00021938	Y55F3BR.1	98	47.767	ENSOGAG00000008730	DDX1	98	47.767	Otolemur_garnettii
WBGene00021938	Y55F3BR.1	98	47.283	ENSOARG00000016369	DDX1	98	47.283	Ovis_aries
WBGene00021938	Y55F3BR.1	98	47.973	ENSPPAG00000027432	DDX1	98	47.973	Pan_paniscus
WBGene00021938	Y55F3BR.1	98	47.703	ENSPPRG00000020556	DDX1	98	47.703	Panthera_pardus
WBGene00021938	Y55F3BR.1	98	47.568	ENSPTIG00000008267	DDX1	98	47.568	Panthera_tigris_altaica
WBGene00021938	Y55F3BR.1	98	47.973	ENSPTRG00000011670	DDX1	100	46.034	Pan_troglodytes
WBGene00021938	Y55F3BR.1	98	47.973	ENSPANG00000025185	DDX1	98	47.973	Papio_anubis
WBGene00021938	Y55F3BR.1	98	45.405	ENSPKIG00000012466	ddx1	98	45.405	Paramormyrops_kingsleyae
WBGene00021938	Y55F3BR.1	55	43.032	ENSPSIG00000012292	DDX1	100	43.032	Pelodiscus_sinensis
WBGene00021938	Y55F3BR.1	98	46.930	ENSPMGG00000000782	ddx1	98	46.930	Periophthalmus_magnuspinnatus
WBGene00021938	Y55F3BR.1	98	47.703	ENSPEMG00000016389	Ddx1	98	47.703	Peromyscus_maniculatus_bairdii
WBGene00021938	Y55F3BR.1	98	45.492	ENSPMAG00000009118	-	98	45.492	Petromyzon_marinus
WBGene00021938	Y55F3BR.1	98	47.027	ENSPCIG00000010941	DDX1	98	47.027	Phascolarctos_cinereus
WBGene00021938	Y55F3BR.1	85	47.887	ENSPFOG00000006873	-	98	47.887	Poecilia_formosa
WBGene00021938	Y55F3BR.1	98	47.638	ENSPFOG00000011921	ddx1	98	47.490	Poecilia_formosa
WBGene00021938	Y55F3BR.1	98	47.354	ENSPLAG00000005939	ddx1	98	47.354	Poecilia_latipinna
WBGene00021938	Y55F3BR.1	98	47.490	ENSPMEG00000011140	ddx1	98	47.490	Poecilia_mexicana
WBGene00021938	Y55F3BR.1	98	47.368	ENSPREG00000011751	ddx1	98	47.218	Poecilia_reticulata
WBGene00021938	Y55F3BR.1	98	47.973	ENSPPYG00000012638	DDX1	98	47.973	Pongo_abelii
WBGene00021938	Y55F3BR.1	98	40.541	ENSPCAG00000001491	DDX1	98	40.541	Procavia_capensis
WBGene00021938	Y55F3BR.1	98	46.748	ENSPCOG00000028185	DDX1	98	46.748	Propithecus_coquereli
WBGene00021938	Y55F3BR.1	98	47.312	ENSPVAG00000013618	DDX1	98	47.312	Pteropus_vampyrus
WBGene00021938	Y55F3BR.1	98	48.043	ENSPNYG00000013839	ddx1	98	48.043	Pundamilia_nyererei
WBGene00021938	Y55F3BR.1	87	46.914	ENSPNAG00000017033	ddx1	95	46.914	Pygocentrus_nattereri
WBGene00021938	Y55F3BR.1	98	47.446	ENSRNOG00000006652	Ddx1	98	47.446	Rattus_norvegicus
WBGene00021938	Y55F3BR.1	98	47.703	ENSRBIG00000041664	DDX1	100	46.939	Rhinopithecus_bieti
WBGene00021938	Y55F3BR.1	98	47.973	ENSRROG00000031167	DDX1	100	46.034	Rhinopithecus_roxellana
WBGene00021938	Y55F3BR.1	98	47.703	ENSSBOG00000027577	DDX1	98	47.703	Saimiri_boliviensis_boliviensis
WBGene00021938	Y55F3BR.1	98	43.342	ENSSHAG00000009363	DDX1	98	43.478	Sarcophilus_harrisii
WBGene00021938	Y55F3BR.1	98	46.081	ENSSFOG00015014476	ddx1	98	46.081	Scleropages_formosus
WBGene00021938	Y55F3BR.1	98	47.554	ENSSMAG00000010094	ddx1	98	47.761	Scophthalmus_maximus
WBGene00021938	Y55F3BR.1	98	47.083	ENSSDUG00000012334	ddx1	98	47.083	Seriola_dumerili
WBGene00021938	Y55F3BR.1	98	46.739	ENSSLDG00000025345	ddx1	98	46.739	Seriola_lalandi_dorsalis
WBGene00021938	Y55F3BR.1	88	49.275	ENSSARG00000004536	DDX1	88	49.275	Sorex_araneus
WBGene00021938	Y55F3BR.1	98	47.826	ENSSPUG00000018835	DDX1	98	47.826	Sphenodon_punctatus
WBGene00021938	Y55F3BR.1	98	46.038	ENSSPAG00000023554	ddx1	98	46.038	Stegastes_partitus
WBGene00021938	Y55F3BR.1	98	47.849	ENSSSCG00000008619	DDX1	98	47.849	Sus_scrofa
WBGene00021938	Y55F3BR.1	98	47.211	ENSTGUG00000013096	DDX1	98	47.211	Taeniopygia_guttata
WBGene00021938	Y55F3BR.1	98	46.612	ENSTRUG00000015765	ddx1	98	46.612	Takifugu_rubripes
WBGene00021938	Y55F3BR.1	98	47.162	ENSTNIG00000016309	ddx1	98	47.162	Tetraodon_nigroviridis
WBGene00021938	Y55F3BR.1	98	46.091	ENSTBEG00000008454	DDX1	98	46.091	Tupaia_belangeri
WBGene00021938	Y55F3BR.1	98	47.312	ENSTTRG00000005081	DDX1	98	47.312	Tursiops_truncatus
WBGene00021938	Y55F3BR.1	59	43.653	ENSUAMG00000017375	DDX1	84	43.653	Ursus_americanus
WBGene00021938	Y55F3BR.1	98	47.425	ENSUMAG00000023450	DDX1	98	47.425	Ursus_maritimus
WBGene00021938	Y55F3BR.1	82	52.000	ENSVPAG00000007764	DDX1	82	52.000	Vicugna_pacos
WBGene00021938	Y55F3BR.1	98	47.510	ENSVVUG00000013085	DDX1	95	47.510	Vulpes_vulpes
WBGene00021938	Y55F3BR.1	98	48.378	ENSXETG00000017825	ddx1	98	48.378	Xenopus_tropicalis
WBGene00021938	Y55F3BR.1	98	46.496	ENSXCOG00000007082	ddx1	98	46.496	Xiphophorus_couchianus
WBGene00021938	Y55F3BR.1	98	47.218	ENSXMAG00000004555	ddx1	98	47.218	Xiphophorus_maculatus