EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00022301 (Gene tree)
Gene ID: -
Gene Symbol: cpsf-1
Alias: -
Full Name: Probable cleavage and polyadenylation specificity factor subunit 1
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Minus strand
Length: 23961 bases
Position: chrIV:2009038-2032998
Accession: Q9N4C2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
Y76B12C	CPSF_A	PF03178.15	3.3e-77	1	1
Y76B12C	CPSF_A	PF03178.15	3.7e-77	1	1
Y76B12C	CPSF_A	PF03178.15	7.7e-74	1	1
Y76B12C	CPSF_A	PF03178.15	6.1e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
Y76B12C.7a	-	4487	NM_001307656	Y76B12C.7a	1454 (aa)	NP_001294585	Q9N4C2
Y76B12C.7c	-	1175	NM_001307657	Y76B12C.7c	352 (aa)	NP_001294586	U4PMR4
Y76B12C.7b	-	3908	NM_001307656	Y76B12C.7b	1263 (aa)	NP_001294585	U4PCC4
Y76B12C.7d	-	451	NM_001307658	Y76B12C.7d	111 (aa)	NP_001294587	U4PS25

Gene Model

Click here to download WBGene00022301's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00022301's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00022301	cpsf-1	100	40.282	ENSG00000071894	CPSF1	100	32.260	Homo_sapiens
WBGene00022301	cpsf-1	99	41.243	ENSAPOG00000019621	cpsf1	100	32.450	Acanthochromis_polyacanthus
WBGene00022301	cpsf-1	100	37.465	ENSAMEG00000005557	CPSF1	99	31.586	Ailuropoda_melanoleuca
WBGene00022301	cpsf-1	99	41.926	ENSACIG00000006112	cpsf1	100	32.324	Amphilophus_citrinellus
WBGene00022301	cpsf-1	99	41.243	ENSAOCG00000007120	cpsf1	100	33.158	Amphiprion_ocellaris
WBGene00022301	cpsf-1	99	41.243	ENSAPEG00000005755	cpsf1	100	32.810	Amphiprion_percula
WBGene00022301	cpsf-1	99	41.808	ENSATEG00000011097	cpsf1	100	32.582	Anabas_testudineus
WBGene00022301	cpsf-1	91	31.121	ENSACAG00000009655	CPSF1	98	31.263	Anolis_carolinensis
WBGene00022301	cpsf-1	100	40.282	ENSANAG00000036514	CPSF1	100	32.150	Aotus_nancymaae
WBGene00022301	cpsf-1	99	41.408	ENSACLG00000012231	cpsf1	100	32.425	Astatotilapia_calliptera
WBGene00022301	cpsf-1	99	35.112	ENSAMXG00000008485	cpsf1	100	30.867	Astyanax_mexicanus
WBGene00022301	cpsf-1	95	40.653	ENSBTAG00000008355	CPSF1	100	31.386	Bos_taurus
WBGene00022301	cpsf-1	100	40.282	ENSCJAG00000021421	CPSF1	100	32.388	Callithrix_jacchus
WBGene00022301	cpsf-1	99	40.282	ENSCAFG00000001600	CPSF1	99	32.240	Canis_familiaris
WBGene00022301	cpsf-1	99	40.282	ENSCAFG00020020821	CPSF1	100	31.845	Canis_lupus_dingo
WBGene00022301	cpsf-1	99	35.511	ENSCHIG00000015833	CPSF1	100	30.901	Capra_hircus
WBGene00022301	cpsf-1	100	40.282	ENSTSYG00000028560	CPSF1	99	34.081	Carlito_syrichta
WBGene00022301	cpsf-1	100	40.282	ENSCAPG00000014921	CPSF1	97	32.702	Cavia_aperea
WBGene00022301	cpsf-1	100	40.449	ENSCPOG00000011448	CPSF1	100	31.776	Cavia_porcellus
WBGene00022301	cpsf-1	100	40.282	ENSCCAG00000037658	CPSF1	100	32.299	Cebus_capucinus
WBGene00022301	cpsf-1	100	40.282	ENSCATG00000037234	CPSF1	99	33.333	Cercocebus_atys
WBGene00022301	cpsf-1	100	40.449	ENSCLAG00000012166	CPSF1	100	32.237	Chinchilla_lanigera
WBGene00022301	cpsf-1	100	40.282	ENSCSAG00000008502	CPSF1	100	32.131	Chlorocebus_sabaeus
WBGene00022301	cpsf-1	94	41.617	ENSCPBG00000018910	CPSF1	96	32.353	Chrysemys_picta_bellii
WBGene00022301	cpsf-1	96	31.575	ENSCING00000000514	-	100	31.575	Ciona_intestinalis
WBGene00022301	cpsf-1	99	39.255	ENSCSAVG00000002293	-	97	36.111	Ciona_savignyi
WBGene00022301	cpsf-1	100	38.418	ENSCANG00000032760	CPSF1	99	32.883	Colobus_angolensis_palliatus
WBGene00022301	cpsf-1	100	40.000	ENSCGRG00001016344	Cpsf1	100	31.971	Cricetulus_griseus_chok1gshd
WBGene00022301	cpsf-1	100	40.000	ENSCGRG00000003118	Cpsf1	100	31.923	Cricetulus_griseus_crigri
WBGene00022301	cpsf-1	99	41.243	ENSCSEG00000013464	cpsf1	100	32.373	Cynoglossus_semilaevis
WBGene00022301	cpsf-1	99	40.678	ENSCVAG00000014059	cpsf1	99	32.883	Cyprinodon_variegatus
WBGene00022301	cpsf-1	99	41.243	ENSDARG00000034178	cpsf1	100	32.507	Danio_rerio
WBGene00022301	cpsf-1	54	31.608	ENSDNOG00000043654	CPSF1	65	31.880	Dasypus_novemcinctus
WBGene00022301	cpsf-1	100	39.718	ENSDORG00000006278	Cpsf1	99	32.249	Dipodomys_ordii
WBGene00022301	cpsf-1	99	37.249	FBgn0024698	Cpsf160	99	30.608	Drosophila_melanogaster
WBGene00022301	cpsf-1	78	39.062	ENSETEG00000006022	CPSF1	81	39.062	Echinops_telfairi
WBGene00022301	cpsf-1	94	39.940	ENSEBUG00000006844	-	97	39.896	Eptatretus_burgeri
WBGene00022301	cpsf-1	100	40.169	ENSEASG00005010774	CPSF1	100	31.911	Equus_asinus_asinus
WBGene00022301	cpsf-1	100	40.169	ENSECAG00000022209	CPSF1	100	31.911	Equus_caballus
WBGene00022301	cpsf-1	100	40.000	ENSEEUG00000000471	CPSF1	100	31.699	Erinaceus_europaeus
WBGene00022301	cpsf-1	99	40.845	ENSELUG00000012271	cpsf1	100	32.892	Esox_lucius
WBGene00022301	cpsf-1	100	40.449	ENSFDAG00000016060	CPSF1	100	31.824	Fukomys_damarensis
WBGene00022301	cpsf-1	99	41.243	ENSFHEG00000016801	cpsf1	100	32.824	Fundulus_heteroclitus
WBGene00022301	cpsf-1	99	40.678	ENSGMOG00000000796	cpsf1	100	32.740	Gadus_morhua
WBGene00022301	cpsf-1	90	31.997	ENSGAFG00000018890	cpsf1	96	32.192	Gambusia_affinis
WBGene00022301	cpsf-1	100	40.563	ENSGACG00000008703	cpsf1	100	32.370	Gasterosteus_aculeatus
WBGene00022301	cpsf-1	99	36.620	ENSGAGG00000004276	CPSF1	100	30.982	Gopherus_agassizii
WBGene00022301	cpsf-1	100	40.282	ENSGGOG00000016185	CPSF1	100	32.171	Gorilla_gorilla
WBGene00022301	cpsf-1	99	41.076	ENSHBUG00000018900	cpsf1	100	32.692	Haplochromis_burtoni
WBGene00022301	cpsf-1	100	40.000	ENSHGLG00000016139	CPSF1	100	32.105	Heterocephalus_glaber_female
WBGene00022301	cpsf-1	100	40.000	ENSHGLG00100009750	CPSF1	100	32.281	Heterocephalus_glaber_male
WBGene00022301	cpsf-1	99	40.395	ENSHCOG00000018509	cpsf1	100	31.586	Hippocampus_comes
WBGene00022301	cpsf-1	99	34.819	ENSIPUG00000011259	cpsf1	100	31.792	Ictalurus_punctatus
WBGene00022301	cpsf-1	100	40.449	ENSSTOG00000009957	CPSF1	98	32.753	Ictidomys_tridecemlineatus
WBGene00022301	cpsf-1	100	40.000	ENSJJAG00000023002	Cpsf1	100	32.042	Jaculus_jaculus
WBGene00022301	cpsf-1	98	35.455	ENSKMAG00000001940	cpsf1	100	40.123	Kryptolebias_marmoratus
WBGene00022301	cpsf-1	99	41.525	ENSLBEG00000003601	cpsf1	100	32.697	Labrus_bergylta
WBGene00022301	cpsf-1	99	40.741	ENSLACG00000000233	CPSF1	88	31.828	Latimeria_chalumnae
WBGene00022301	cpsf-1	99	42.090	ENSLOCG00000008484	cpsf1	100	32.792	Lepisosteus_oculatus
WBGene00022301	cpsf-1	100	39.718	ENSLAFG00000022601	CPSF1	99	32.131	Loxodonta_africana
WBGene00022301	cpsf-1	100	40.282	ENSMFAG00000037013	CPSF1	99	33.333	Macaca_fascicularis
WBGene00022301	cpsf-1	100	40.282	ENSMMUG00000007380	CPSF1	99	33.333	Macaca_mulatta
WBGene00022301	cpsf-1	100	40.282	ENSMNEG00000043564	CPSF1	99	33.333	Macaca_nemestrina
WBGene00022301	cpsf-1	100	40.282	ENSMLEG00000043010	CPSF1	99	33.333	Mandrillus_leucophaeus
WBGene00022301	cpsf-1	99	40.960	ENSMAMG00000003803	cpsf1	100	32.711	Mastacembelus_armatus
WBGene00022301	cpsf-1	99	41.076	ENSMZEG00005001168	cpsf1	100	32.159	Maylandia_zebra
WBGene00022301	cpsf-1	100	40.169	ENSMAUG00000003601	Cpsf1	100	32.021	Mesocricetus_auratus
WBGene00022301	cpsf-1	100	40.169	ENSMICG00000015767	CPSF1	100	32.322	Microcebus_murinus
WBGene00022301	cpsf-1	100	39.888	ENSMOCG00000022758	Cpsf1	100	32.218	Microtus_ochrogaster
WBGene00022301	cpsf-1	99	41.076	ENSMMOG00000021245	cpsf1	100	33.134	Mola_mola
WBGene00022301	cpsf-1	100	40.282	ENSMODG00000010755	CPSF1	100	31.714	Monodelphis_domestica
WBGene00022301	cpsf-1	99	41.525	ENSMALG00000020545	cpsf1	100	32.621	Monopterus_albus
WBGene00022301	cpsf-1	100	40.169	MGP_CAROLIEiJ_G0019936	Cpsf1	100	32.016	Mus_caroli
WBGene00022301	cpsf-1	100	40.169	ENSMUSG00000034022	Cpsf1	100	32.016	Mus_musculus
WBGene00022301	cpsf-1	100	40.000	MGP_PahariEiJ_G0019946	Cpsf1	100	32.299	Mus_pahari
WBGene00022301	cpsf-1	100	40.169	MGP_SPRETEiJ_G0020839	Cpsf1	100	32.016	Mus_spretus
WBGene00022301	cpsf-1	95	40.653	ENSMPUG00000006419	CPSF1	92	32.744	Mustela_putorius_furo
WBGene00022301	cpsf-1	81	35.556	ENSMLUG00000000667	-	92	34.706	Myotis_lucifugus
WBGene00022301	cpsf-1	99	40.113	ENSNGAG00000022460	Cpsf1	100	32.479	Nannospalax_galili
WBGene00022301	cpsf-1	99	41.076	ENSNBRG00000000813	cpsf1	100	31.062	Neolamprologus_brichardi
WBGene00022301	cpsf-1	98	33.945	ENSNLEG00000010633	-	94	38.095	Nomascus_leucogenys
WBGene00022301	cpsf-1	98	36.364	ENSMEUG00000014922	CPSF1	84	35.393	Notamacropus_eugenii
WBGene00022301	cpsf-1	57	56.250	ENSOPRG00000004693	-	57	46.409	Ochotona_princeps
WBGene00022301	cpsf-1	100	40.449	ENSODEG00000013995	CPSF1	100	32.232	Octodon_degus
WBGene00022301	cpsf-1	99	41.076	ENSONIG00000007676	cpsf1	100	32.305	Oreochromis_niloticus
WBGene00022301	cpsf-1	63	39.837	ENSOANG00000010716	CPSF1	80	39.837	Ornithorhynchus_anatinus
WBGene00022301	cpsf-1	99	40.678	ENSORLG00000013544	cpsf1	91	43.852	Oryzias_latipes
WBGene00022301	cpsf-1	99	40.678	ENSORLG00020021693	cpsf1	91	43.852	Oryzias_latipes_hni
WBGene00022301	cpsf-1	99	40.678	ENSORLG00015009979	cpsf1	100	32.185	Oryzias_latipes_hsok
WBGene00022301	cpsf-1	99	40.395	ENSOMEG00000011849	cpsf1	100	31.777	Oryzias_melastigma
WBGene00022301	cpsf-1	100	40.169	ENSOGAG00000000315	CPSF1	100	32.129	Otolemur_garnettii
WBGene00022301	cpsf-1	100	40.282	ENSPPAG00000019280	CPSF1	99	34.361	Pan_paniscus
WBGene00022301	cpsf-1	100	40.282	ENSPTRG00000049288	-	99	34.361	Pan_troglodytes
WBGene00022301	cpsf-1	100	40.282	ENSPTRG00000051253	-	99	34.361	Pan_troglodytes
WBGene00022301	cpsf-1	100	40.282	ENSPANG00000015005	CPSF1	99	32.883	Papio_anubis
WBGene00022301	cpsf-1	99	39.886	ENSPKIG00000002582	cpsf1	100	32.782	Paramormyrops_kingsleyae
WBGene00022301	cpsf-1	81	36.667	ENSPMGG00000022177	-	99	35.268	Periophthalmus_magnuspinnatus
WBGene00022301	cpsf-1	100	40.282	ENSPCIG00000009035	CPSF1	93	34.379	Phascolarctos_cinereus
WBGene00022301	cpsf-1	99	40.395	ENSPFOG00000012870	cpsf1	100	31.865	Poecilia_formosa
WBGene00022301	cpsf-1	55	46.392	ENSPLAG00000022739	-	94	43.933	Poecilia_latipinna
WBGene00022301	cpsf-1	55	46.392	ENSPMEG00000019534	-	93	43.933	Poecilia_mexicana
WBGene00022301	cpsf-1	99	40.678	ENSPREG00000016307	cpsf1	100	32.060	Poecilia_reticulata
WBGene00022301	cpsf-1	100	38.873	ENSPCAG00000011541	CPSF1	93	38.889	Procavia_capensis
WBGene00022301	cpsf-1	100	35.393	ENSPCOG00000020001	CPSF1	99	33.482	Propithecus_coquereli
WBGene00022301	cpsf-1	97	40.751	ENSPVAG00000006761	CPSF1	87	40.503	Pteropus_vampyrus
WBGene00022301	cpsf-1	99	41.408	ENSPNYG00000004906	cpsf1	100	32.220	Pundamilia_nyererei
WBGene00022301	cpsf-1	99	38.810	ENSPNAG00000024395	cpsf1	100	32.672	Pygocentrus_nattereri
WBGene00022301	cpsf-1	100	40.000	ENSRNOG00000030705	Cpsf1	100	32.301	Rattus_norvegicus
WBGene00022301	cpsf-1	100	40.282	ENSRBIG00000044907	CPSF1	99	33.333	Rhinopithecus_bieti
WBGene00022301	cpsf-1	100	40.282	ENSRROG00000044861	CPSF1	99	33.333	Rhinopithecus_roxellana
WBGene00022301	cpsf-1	100	40.282	ENSSBOG00000027177	CPSF1	99	32.736	Saimiri_boliviensis_boliviensis
WBGene00022301	cpsf-1	100	40.282	ENSSHAG00000006500	CPSF1	100	31.672	Sarcophilus_harrisii
WBGene00022301	cpsf-1	99	40.227	ENSSFOG00015004606	cpsf1	99	33.217	Scleropages_formosus
WBGene00022301	cpsf-1	99	41.243	ENSSMAG00000020547	cpsf1	100	32.168	Scophthalmus_maximus
WBGene00022301	cpsf-1	99	41.243	ENSSDUG00000001100	cpsf1	100	33.112	Seriola_dumerili
WBGene00022301	cpsf-1	99	41.243	ENSSLDG00000003619	cpsf1	100	33.289	Seriola_lalandi_dorsalis
WBGene00022301	cpsf-1	95	32.029	ENSSARG00000003643	CPSF1	87	31.755	Sorex_araneus
WBGene00022301	cpsf-1	99	41.408	ENSSPUG00000014396	CPSF1	99	32.599	Sphenodon_punctatus
WBGene00022301	cpsf-1	99	41.243	ENSSPAG00000005349	cpsf1	100	32.237	Stegastes_partitus
WBGene00022301	cpsf-1	100	40.169	ENSSSCG00000005906	CPSF1	100	31.402	Sus_scrofa
WBGene00022301	cpsf-1	94	41.493	ENSTRUG00000013134	cpsf1	99	32.396	Takifugu_rubripes
WBGene00022301	cpsf-1	94	41.141	ENSTNIG00000014027	cpsf1	100	32.222	Tetraodon_nigroviridis
WBGene00022301	cpsf-1	59	42.222	ENSTBEG00000001756	CPSF1	73	42.222	Tupaia_belangeri
WBGene00022301	cpsf-1	100	39.888	ENSTTRG00000001937	CPSF1	87	36.581	Tursiops_truncatus
WBGene00022301	cpsf-1	100	40.169	ENSUAMG00000006476	CPSF1	97	32.267	Ursus_americanus
WBGene00022301	cpsf-1	98	34.862	ENSVVUG00000005940	-	99	32.287	Vulpes_vulpes
WBGene00022301	cpsf-1	99	40.113	ENSXCOG00000003608	cpsf1	100	32.337	Xiphophorus_couchianus
WBGene00022301	cpsf-1	99	40.395	ENSXMAG00000005798	cpsf1	100	32.580	Xiphophorus_maculatus