EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00022765 (Gene tree)
Gene ID: -
Gene Symbol: ZK546.14
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: confidence
Strand: Minus strand
Length: 1797 bases
Position: chrII:4944042-4945838
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ZK546	SURF6	PF04935.12	1.5e-27	1	1
ZK546	SURF6	PF04935.12	1.5e-27	1	1
ZK546	SURF6	PF04935.12	2.4e-27	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA binding proteomes in eukaryotic organisms	mRBPome & elegans	2015 Nov 23	Matia-Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ZK546.14b	-	1539	NM_182183	ZK546.14b	454 (aa)	NP_871983	G8JYE5
ZK546.14a.2	-	1548	NM_062506	ZK546.14a.2	472 (aa)	NP_494907	Q23525
ZK546.14a.1	-	1606	NM_062506	ZK546.14a.1	472 (aa)	NP_494907	Q23525

Gene Model

Click here to download WBGene00022765's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00022765's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00022765	ZK546.14	52	32.645	ENSG00000148296	SURF6	66	32.645	Homo_sapiens
WBGene00022765	ZK546.14	51	34.025	ENSAPOG00000021015	surf6	66	35.772	Acanthochromis_polyacanthus
WBGene00022765	ZK546.14	51	33.195	ENSAOCG00000015839	surf6	66	34.959	Amphiprion_ocellaris
WBGene00022765	ZK546.14	51	32.780	ENSAPEG00000022442	surf6	66	34.553	Amphiprion_percula
WBGene00022765	ZK546.14	52	31.818	ENSCATG00000042004	SURF6	66	31.818	Cercocebus_atys
WBGene00022765	ZK546.14	52	32.645	ENSGGOG00000014426	SURF6	66	32.645	Gorilla_gorilla
WBGene00022765	ZK546.14	52	31.818	ENSNLEG00000013079	SURF6	66	33.058	Nomascus_leucogenys
WBGene00022765	ZK546.14	51	32.636	ENSSPAG00000005916	surf6	66	34.836	Stegastes_partitus