EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: WBGene00138717 (Gene tree)
Gene ID: -
Gene Symbol: F52C12.6
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Caenorhabditis_elegans
Status: putative
Strand: Plus strand
Length: 3039 bases
Position: chrIV:1956711-1959749
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
F52C12	RIO1	PF01163.22	2.1e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
F52C12.6a	-	817	NM_001268308	F52C12.6a	245 (aa)	NP_001255237	B5WWL2
F52C12.6b	-	423	NM_001307463	F52C12.6b	140 (aa)	NP_001294392	U4PBM5
F52C12.6c	-	102	NM_001307464	F52C12.6c	33 (aa)	NP_001294393	U4PM30

Gene Model

Click here to download WBGene00138717's gene model file

Protein-Protein Interaction (PPI)

Clik here to download WBGene00138717's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
WBGene00138717	F52C12.6	88	44.495	ENSG00000172315	TP53RK	85	44.495	Homo_sapiens
WBGene00138717	F52C12.6	88	45.249	ENSAPOG00000007130	tp53rk	95	46.606	Acanthochromis_polyacanthus
WBGene00138717	F52C12.6	69	42.373	ENSAMEG00000000007	TP53RK	100	42.373	Ailuropoda_melanoleuca
WBGene00138717	F52C12.6	88	43.750	ENSACIG00000000770	tp53rk	95	45.089	Amphilophus_citrinellus
WBGene00138717	F52C12.6	88	44.796	ENSAOCG00000009426	tp53rk	95	46.154	Amphiprion_ocellaris
WBGene00138717	F52C12.6	88	44.796	ENSAPEG00000017566	tp53rk	95	46.154	Amphiprion_percula
WBGene00138717	F52C12.6	88	44.796	ENSATEG00000003109	tp53rk	95	44.796	Anabas_testudineus
WBGene00138717	F52C12.6	88	44.954	ENSACAG00000016698	TP53RK	87	44.954	Anolis_carolinensis
WBGene00138717	F52C12.6	88	44.037	ENSANAG00000021017	TP53RK	85	44.037	Aotus_nancymaae
WBGene00138717	F52C12.6	83	43.541	ENSACLG00000026597	tp53rk	92	43.541	Astatotilapia_calliptera
WBGene00138717	F52C12.6	88	45.000	ENSAMXG00000040578	tp53rk	91	45.000	Astyanax_mexicanus
WBGene00138717	F52C12.6	88	45.413	ENSBTAG00000027326	TP53RK	85	45.413	Bos_taurus
WBGene00138717	F52C12.6	88	44.037	ENSCJAG00000039826	TP53RK	85	44.037	Callithrix_jacchus
WBGene00138717	F52C12.6	88	44.495	ENSCAFG00000029496	TP53RK	72	44.144	Canis_familiaris
WBGene00138717	F52C12.6	88	44.495	ENSCAFG00020015159	TP53RK	85	44.495	Canis_lupus_dingo
WBGene00138717	F52C12.6	88	44.954	ENSCHIG00000026217	-	85	44.954	Capra_hircus
WBGene00138717	F52C12.6	88	44.037	ENSCHIG00000011635	-	85	44.037	Capra_hircus
WBGene00138717	F52C12.6	88	43.694	ENSCPOG00000005477	TP53RK	88	43.694	Cavia_porcellus
WBGene00138717	F52C12.6	88	43.578	ENSCCAG00000025781	TP53RK	85	43.578	Cebus_capucinus
WBGene00138717	F52C12.6	88	43.578	ENSCATG00000042243	TP53RK	85	43.578	Cercocebus_atys
WBGene00138717	F52C12.6	88	43.694	ENSCLAG00000015459	TP53RK	88	43.694	Chinchilla_lanigera
WBGene00138717	F52C12.6	88	44.495	ENSCSAG00000014864	TP53RK	85	44.495	Chlorocebus_sabaeus
WBGene00138717	F52C12.6	64	41.463	ENSCHOG00000005034	TP53RK	100	41.463	Choloepus_hoffmanni
WBGene00138717	F52C12.6	88	44.954	ENSCPBG00000026757	TP53RK	91	44.954	Chrysemys_picta_bellii
WBGene00138717	F52C12.6	87	42.791	ENSCSAVG00000003140	-	97	42.791	Ciona_savignyi
WBGene00138717	F52C12.6	88	44.495	ENSCANG00000034367	-	85	44.495	Colobus_angolensis_palliatus
WBGene00138717	F52C12.6	88	41.284	ENSCANG00000034667	-	88	41.284	Colobus_angolensis_palliatus
WBGene00138717	F52C12.6	88	44.037	ENSCGRG00001017009	-	86	44.037	Cricetulus_griseus_chok1gshd
WBGene00138717	F52C12.6	64	42.236	ENSCGRG00000008894	-	80	42.236	Cricetulus_griseus_crigri
WBGene00138717	F52C12.6	88	46.606	ENSCSEG00000020246	tp53rk	95	46.606	Cynoglossus_semilaevis
WBGene00138717	F52C12.6	88	44.495	ENSDARG00000112667	tp53rk	92	44.495	Danio_rerio
WBGene00138717	F52C12.6	88	44.037	ENSDNOG00000003789	TP53RK	85	44.037	Dasypus_novemcinctus
WBGene00138717	F52C12.6	88	41.071	FBgn0035590	Prpk	98	41.071	Drosophila_melanogaster
WBGene00138717	F52C12.6	88	45.413	ENSETEG00000009174	TP53RK	85	45.413	Echinops_telfairi
WBGene00138717	F52C12.6	88	38.211	ENSEBUG00000000968	tp53rk	89	38.211	Eptatretus_burgeri
WBGene00138717	F52C12.6	88	44.595	ENSEASG00005023356	TP53RK	85	44.595	Equus_asinus_asinus
WBGene00138717	F52C12.6	88	44.595	ENSECAG00000038590	TP53RK	85	44.595	Equus_caballus
WBGene00138717	F52C12.6	88	43.049	ENSEEUG00000014466	TP53RK	86	43.049	Erinaceus_europaeus
WBGene00138717	F52C12.6	87	44.749	ENSELUG00000013117	tp53rk	91	44.749	Esox_lucius
WBGene00138717	F52C12.6	88	44.144	ENSFCAG00000040607	TP53RK	85	44.144	Felis_catus
WBGene00138717	F52C12.6	72	41.436	ENSFALG00000005147	TP53RK	100	41.436	Ficedula_albicollis
WBGene00138717	F52C12.6	64	41.818	ENSFDAG00000015505	TP53RK	79	41.818	Fukomys_damarensis
WBGene00138717	F52C12.6	88	41.964	ENSGMOG00000017301	tp53rk	93	43.304	Gadus_morhua
WBGene00138717	F52C12.6	88	45.701	ENSGAFG00000008308	tp53rk	95	45.701	Gambusia_affinis
WBGene00138717	F52C12.6	88	43.836	ENSGACG00000011424	tp53rk	93	43.836	Gasterosteus_aculeatus
WBGene00138717	F52C12.6	88	44.037	ENSGAGG00000024362	TP53RK	91	44.037	Gopherus_agassizii
WBGene00138717	F52C12.6	88	44.495	ENSGGOG00000002063	TP53RK	85	44.495	Gorilla_gorilla
WBGene00138717	F52C12.6	88	45.249	ENSHBUG00000003738	tp53rk	93	45.249	Haplochromis_burtoni
WBGene00138717	F52C12.6	88	44.144	ENSHGLG00000004532	TP53RK	88	44.144	Heterocephalus_glaber_female
WBGene00138717	F52C12.6	88	44.144	ENSHGLG00100001420	TP53RK	88	44.144	Heterocephalus_glaber_male
WBGene00138717	F52C12.6	88	45.045	ENSHCOG00000015970	tp53rk	93	45.045	Hippocampus_comes
WBGene00138717	F52C12.6	88	44.091	ENSIPUG00000002500	tp53rk	92	44.091	Ictalurus_punctatus
WBGene00138717	F52C12.6	88	45.495	ENSSTOG00000023195	TP53RK	88	45.495	Ictidomys_tridecemlineatus
WBGene00138717	F52C12.6	88	45.045	ENSJJAG00000017483	-	88	45.045	Jaculus_jaculus
WBGene00138717	F52C12.6	88	44.091	ENSKMAG00000013771	tp53rk	95	45.000	Kryptolebias_marmoratus
WBGene00138717	F52C12.6	88	44.292	ENSLACG00000009114	TP53RK	93	44.292	Latimeria_chalumnae
WBGene00138717	F52C12.6	89	43.668	ENSLOCG00000002129	tp53rk	85	43.668	Lepisosteus_oculatus
WBGene00138717	F52C12.6	88	44.954	ENSLAFG00000002452	TP53RK	88	44.954	Loxodonta_africana
WBGene00138717	F52C12.6	88	44.495	ENSMFAG00000042174	TP53RK	85	44.495	Macaca_fascicularis
WBGene00138717	F52C12.6	88	44.495	ENSMNEG00000035758	TP53RK	85	44.495	Macaca_nemestrina
WBGene00138717	F52C12.6	88	44.495	ENSMLEG00000042123	TP53RK	85	44.495	Mandrillus_leucophaeus
WBGene00138717	F52C12.6	83	44.076	ENSMAMG00000000432	tp53rk	85	44.076	Mastacembelus_armatus
WBGene00138717	F52C12.6	88	45.249	ENSMZEG00005004953	tp53rk	93	45.249	Maylandia_zebra
WBGene00138717	F52C12.6	88	44.595	ENSMAUG00000018147	-	88	44.595	Mesocricetus_auratus
WBGene00138717	F52C12.6	88	43.243	ENSMICG00000030995	TP53RK	85	43.243	Microcebus_murinus
WBGene00138717	F52C12.6	88	43.243	ENSMOCG00000020701	-	99	41.036	Microtus_ochrogaster
WBGene00138717	F52C12.6	86	40.367	ENSMOCG00000004008	-	92	40.724	Microtus_ochrogaster
WBGene00138717	F52C12.6	88	38.356	ENSMMOG00000009664	tp53rk	85	39.726	Mola_mola
WBGene00138717	F52C12.6	54	44.030	ENSMODG00000028859	-	64	44.030	Monodelphis_domestica
WBGene00138717	F52C12.6	88	44.796	ENSMALG00000016276	tp53rk	93	44.796	Monopterus_albus
WBGene00138717	F52C12.6	88	44.037	MGP_CAROLIEiJ_G0024689	-	89	44.037	Mus_caroli
WBGene00138717	F52C12.6	88	43.578	ENSMUSG00000039725	Trp53rka	99	41.224	Mus_musculus
WBGene00138717	F52C12.6	88	44.037	ENSMUSG00000042854	Trp53rkb	89	44.037	Mus_musculus
WBGene00138717	F52C12.6	87	43.721	MGP_PahariEiJ_G0026131	-	87	43.721	Mus_pahari
WBGene00138717	F52C12.6	88	44.037	MGP_SPRETEiJ_G0025616	Trp53rkb	89	44.037	Mus_spretus
WBGene00138717	F52C12.6	88	44.037	MGP_SPRETEiJ_G0025609	Trp53rka	89	44.037	Mus_spretus
WBGene00138717	F52C12.6	88	44.037	ENSMLUG00000012340	TP53RK	84	44.037	Myotis_lucifugus
WBGene00138717	F52C12.6	88	41.743	ENSNGAG00000015004	-	88	41.743	Nannospalax_galili
WBGene00138717	F52C12.6	88	44.144	ENSNGAG00000017924	-	88	44.144	Nannospalax_galili
WBGene00138717	F52C12.6	88	44.495	ENSNLEG00000029775	TP53RK	85	44.495	Nomascus_leucogenys
WBGene00138717	F52C12.6	88	44.954	ENSMEUG00000002329	TP53RK	93	42.449	Notamacropus_eugenii
WBGene00138717	F52C12.6	87	43.304	ENSOPRG00000002155	TP53RK	86	43.304	Ochotona_princeps
WBGene00138717	F52C12.6	88	44.037	ENSODEG00000009596	TP53RK	88	44.037	Octodon_degus
WBGene00138717	F52C12.6	88	44.796	ENSONIG00000003139	tp53rk	86	46.154	Oreochromis_niloticus
WBGene00138717	F52C12.6	88	42.986	ENSORLG00000027986	tp53rk	95	42.986	Oryzias_latipes
WBGene00138717	F52C12.6	88	43.439	ENSORLG00020001150	tp53rk	95	43.439	Oryzias_latipes_hni
WBGene00138717	F52C12.6	88	41.629	ENSORLG00015022941	tp53rk	79	42.986	Oryzias_latipes_hsok
WBGene00138717	F52C12.6	88	43.243	ENSOMEG00000015137	tp53rk	95	43.243	Oryzias_melastigma
WBGene00138717	F52C12.6	88	44.749	ENSOGAG00000012689	TP53RK	85	44.749	Otolemur_garnettii
WBGene00138717	F52C12.6	88	44.954	ENSOARG00000009156	TP53RK	85	44.954	Ovis_aries
WBGene00138717	F52C12.6	88	44.495	ENSPPAG00000038588	TP53RK	85	44.495	Pan_paniscus
WBGene00138717	F52C12.6	88	44.144	ENSPPRG00000010845	TP53RK	85	44.144	Panthera_pardus
WBGene00138717	F52C12.6	74	39.153	ENSPTIG00000009801	TP53RK	76	39.153	Panthera_tigris_altaica
WBGene00138717	F52C12.6	88	44.495	ENSPTRG00000051150	TP53RK	85	44.495	Pan_troglodytes
WBGene00138717	F52C12.6	88	44.495	ENSPANG00000020822	TP53RK	85	44.495	Papio_anubis
WBGene00138717	F52C12.6	88	43.636	ENSPKIG00000003915	tp53rk	92	43.636	Paramormyrops_kingsleyae
WBGene00138717	F52C12.6	88	44.292	ENSPSIG00000012226	TP53RK	85	44.749	Pelodiscus_sinensis
WBGene00138717	F52C12.6	98	42.510	ENSPMGG00000008635	tp53rk	92	42.510	Periophthalmus_magnuspinnatus
WBGene00138717	F52C12.6	88	41.096	ENSPMAG00000001764	tp53rk	86	41.096	Petromyzon_marinus
WBGene00138717	F52C12.6	88	45.249	ENSPFOG00000011783	tp53rk	95	45.249	Poecilia_formosa
WBGene00138717	F52C12.6	88	45.249	ENSPLAG00000012951	tp53rk	95	45.249	Poecilia_latipinna
WBGene00138717	F52C12.6	88	45.249	ENSPMEG00000015978	tp53rk	95	45.249	Poecilia_mexicana
WBGene00138717	F52C12.6	88	45.536	ENSPREG00000021035	tp53rk	92	45.536	Poecilia_reticulata
WBGene00138717	F52C12.6	88	44.495	ENSPPYG00000011097	TP53RK	85	44.495	Pongo_abelii
WBGene00138717	F52C12.6	88	44.954	ENSPCAG00000014248	TP53RK	85	44.954	Procavia_capensis
WBGene00138717	F52C12.6	88	43.694	ENSPCOG00000021538	TP53RK	85	43.694	Propithecus_coquereli
WBGene00138717	F52C12.6	88	44.796	ENSPNYG00000007461	tp53rk	93	44.796	Pundamilia_nyererei
WBGene00138717	F52C12.6	88	44.395	ENSPNAG00000007871	tp53rk	91	44.395	Pygocentrus_nattereri
WBGene00138717	F52C12.6	88	44.595	ENSRNOG00000029470	LOC685619	96	41.897	Rattus_norvegicus
WBGene00138717	F52C12.6	88	44.595	ENSRNOG00000007285	Tp53rk	89	44.595	Rattus_norvegicus
WBGene00138717	F52C12.6	88	44.495	ENSRBIG00000034747	TP53RK	85	44.495	Rhinopithecus_bieti
WBGene00138717	F52C12.6	88	44.495	ENSRROG00000007671	TP53RK	85	44.495	Rhinopithecus_roxellana
WBGene00138717	F52C12.6	88	44.144	ENSSBOG00000028863	TP53RK	85	44.144	Saimiri_boliviensis_boliviensis
WBGene00138717	F52C12.6	88	45.872	ENSSHAG00000002155	TP53RK	84	45.872	Sarcophilus_harrisii
WBGene00138717	F52C12.6	88	45.089	ENSSFOG00015001790	tp53rk	92	45.089	Scleropages_formosus
WBGene00138717	F52C12.6	88	42.979	ENSSMAG00000016610	tp53rk	85	43.404	Scophthalmus_maximus
WBGene00138717	F52C12.6	88	46.606	ENSSDUG00000006796	tp53rk	93	46.606	Seriola_dumerili
WBGene00138717	F52C12.6	88	46.606	ENSSLDG00000021017	tp53rk	93	46.606	Seriola_lalandi_dorsalis
WBGene00138717	F52C12.6	88	39.450	ENSSPUG00000003590	TP53RK	87	39.450	Sphenodon_punctatus
WBGene00138717	F52C12.6	89	44.889	ENSSPAG00000003918	tp53rk	97	46.222	Stegastes_partitus
WBGene00138717	F52C12.6	88	43.694	ENSSSCG00000007452	TP53RK	85	43.694	Sus_scrofa
WBGene00138717	F52C12.6	88	46.396	ENSTRUG00000021182	tp53rk	93	46.396	Takifugu_rubripes
WBGene00138717	F52C12.6	88	43.379	ENSTNIG00000003803	tp53rk	91	43.379	Tetraodon_nigroviridis
WBGene00138717	F52C12.6	88	43.578	ENSTBEG00000016574	TP53RK	85	43.578	Tupaia_belangeri
WBGene00138717	F52C12.6	88	43.694	ENSTTRG00000007142	TP53RK	86	43.694	Tursiops_truncatus
WBGene00138717	F52C12.6	88	44.037	ENSUAMG00000021617	TP53RK	85	44.037	Ursus_americanus
WBGene00138717	F52C12.6	88	44.495	ENSVVUG00000016557	TP53RK	72	44.495	Vulpes_vulpes
WBGene00138717	F52C12.6	89	43.049	ENSXETG00000003469	tp53rk	91	43.049	Xenopus_tropicalis
WBGene00138717	F52C12.6	64	44.512	ENSXCOG00000003917	tp53rk	76	44.512	Xiphophorus_couchianus
WBGene00138717	F52C12.6	88	44.796	ENSXMAG00000021217	TP53RK	95	44.796	Xiphophorus_maculatus
WBGene00138717	F52C12.6	88	44.796	ENSXMAG00000023174	tp53rk	95	44.796	Xiphophorus_maculatus
WBGene00138717	F52C12.6	88	44.796	ENSXMAG00000025503	-	95	44.796	Xiphophorus_maculatus
WBGene00138717	F52C12.6	64	43.902	ENSXMAG00000020079	-	80	43.902	Xiphophorus_maculatus