EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YAL035W (Gene tree)
Gene ID: -
Gene Symbol: FUN12
Alias: yIF2
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 3009
Position: chrI:76427-79435
Accession: S000000033
RBP type: canonical RBP
Summary: Translation initiation factor eIF5B%3B GTPase that promotes Met-tRNAiMet binding to ribosomes and ribosomal subunit joining%3B promotes GTP-dependent maturation of 18S rRNA by Nob1p%3B protein abundance increases in response to DNA replication stress%3B homolog of bacterial IF2

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YAL035W_mRNA	IF-2	PF11987.8	2.6e-22	1	1
YAL035W_mRNA	GTP_EFTU	PF00009.27	3.3e-33	1	1
YAL035W_mRNA	MMR_HSR1	PF01926.23	4.6e-08	1	1
YAL035W_mRNA	GTP_EFTU_D2	PF03144.25	5.2e-17	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	MS & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YAL035W_mRNA	-	3009	-	YAL035W_mRNA	1002 (aa)	-	P39730

Gene Model

Click here to download YAL035W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YAL035W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YAL035W	FUN12	60	50.332	ENSAPOG00000004375	eif5b	50	50.332	Acanthochromis_polyacanthus
YAL035W	FUN12	60	50.332	ENSACIG00000024324	eif5b	59	50.498	Amphilophus_citrinellus
YAL035W	FUN12	60	50.664	ENSAOCG00000018386	eif5b	50	50.831	Amphiprion_ocellaris
YAL035W	FUN12	60	50.997	ENSATEG00000011451	-	60	51.163	Anabas_testudineus
YAL035W	FUN12	60	51.163	ENSATEG00000011259	eif5b	60	51.163	Anabas_testudineus
YAL035W	FUN12	60	51.815	ENSACAG00000008305	-	50	51.815	Anolis_carolinensis
YAL035W	FUN12	61	48.366	WBGene00021857	iffb-1	69	42.968	Caenorhabditis_elegans
YAL035W	FUN12	60	50.498	ENSCAPG00000014619	-	50	50.498	Cavia_aperea
YAL035W	FUN12	60	49.917	ENSCSAVG00000008808	-	81	43.909	Ciona_savignyi
YAL035W	FUN12	60	52.570	FBgn0026259	eIF5B	52	52.570	Drosophila_melanogaster
YAL035W	FUN12	60	51.082	ENSELUG00000001132	eif5b	55	51.082	Esox_lucius
YAL035W	FUN12	60	50.997	ENSGMOG00000002031	eif5b	51	51.163	Gadus_morhua
YAL035W	FUN12	60	50.664	ENSGACG00000010536	eif5b	81	50.664	Gasterosteus_aculeatus
YAL035W	FUN12	60	50.825	ENSGAGG00000022242	-	88	50.825	Gopherus_agassizii
YAL035W	FUN12	60	50.825	ENSIPUG00000020910	eif5b	51	50.997	Ictalurus_punctatus
YAL035W	FUN12	60	50.330	ENSLBEG00000027090	eif5b	56	50.413	Labrus_bergylta
YAL035W	FUN12	60	50.245	ENSLACG00000011688	eif5b	50	50.409	Latimeria_chalumnae
YAL035W	FUN12	60	51.329	ENSMODG00000001387	-	50	51.329	Monodelphis_domestica
YAL035W	FUN12	60	50.831	ENSNBRG00000021912	eif5b	55	50.997	Neolamprologus_brichardi
YAL035W	FUN12	60	50.664	ENSORLG00000001525	eif5b	50	50.831	Oryzias_latipes
YAL035W	FUN12	60	50.664	ENSORLG00020005327	eif5b	50	50.831	Oryzias_latipes_hni
YAL035W	FUN12	60	50.664	ENSORLG00015008949	eif5b	50	50.831	Oryzias_latipes_hsok
YAL035W	FUN12	60	50.831	ENSOMEG00000016539	eif5b	75	50.997	Oryzias_melastigma
YAL035W	FUN12	60	50.997	ENSPFOG00000007543	eif5b	85	52.022	Poecilia_formosa
YAL035W	FUN12	60	50.831	ENSPLAG00000015913	eif5b	50	50.997	Poecilia_latipinna
YAL035W	FUN12	60	50.997	ENSPMEG00000006712	eif5b	50	50.997	Poecilia_mexicana
YAL035W	FUN12	61	49.180	ENSPCOG00000019508	-	99	46.106	Propithecus_coquereli
YAL035W	FUN12	56	40.169	ENSPVAG00000006592	-	51	40.169	Pteropus_vampyrus
YAL035W	FUN12	60	50.997	ENSPNYG00000021051	eif5b	60	51.163	Pundamilia_nyererei
YAL035W	FUN12	60	50.332	ENSSMAG00000000045	eif5b	58	50.498	Scophthalmus_maximus
YAL035W	FUN12	60	51.163	ENSSDUG00000005847	eif5b	67	47.714	Seriola_dumerili
YAL035W	FUN12	60	51.163	ENSSLDG00000013738	eif5b	59	51.329	Seriola_lalandi_dorsalis
YAL035W	FUN12	60	48.173	ENSSPAG00000005335	eif5b	58	48.339	Stegastes_partitus
YAL035W	FUN12	60	50.664	ENSTRUG00000007772	eif5b	59	50.831	Takifugu_rubripes
YAL035W	FUN12	60	50.831	ENSTNIG00000006580	eif5b	66	50.997	Tetraodon_nigroviridis
YAL035W	FUN12	60	50.990	ENSXETG00000019377	eif5b	50	51.163	Xenopus_tropicalis
YAL035W	FUN12	60	50.993	ENSXCOG00000016681	eif5b	66	51.159	Xiphophorus_couchianus
YAL035W	FUN12	60	50.580	ENSXMAG00000001002	eif5b	66	50.746	Xiphophorus_maculatus