EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YAR007C (Gene tree)
Gene ID: -
Gene Symbol: RFA1
Alias: BUF2|FUN3|RPA1
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1866
Position: chrI:156754-158619
Accession: S000000065
RBP type: canonical RBP
Summary: Subunit of heterotrimeric Replication Protein A (RPA)%3B RPA is a highly conserved single-stranded DNA binding protein involved in DNA replication%2C repair%2C and recombination%3B RPA protects against inappropriate telomere recombination%2C and upon telomere uncapping%2C prevents cell proliferation by a checkpoint-independent pathway%3B role in DNA catenation/decatenation pathway of chromosome disentangling%3B relocalizes to the cytosol in response to hypoxia

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YAR007C_mRNA	tRNA_anti-codon	PF01336.25	1.1e-14	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468
21124907	A screen for RNA binding proteins in yeast indicates dual functions for many enzymes	ProtoArray & yeast	2010 Nov 11	DOI: 10.1371/journal.pone.0015499
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	MS & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YAR007C_mRNA	-	1866	-	YAR007C_mRNA	621 (aa)	-	P22336

Gene Model

Click here to download YAR007C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YAR007C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YAR007C	RFA1	95	31.219	ENSAPOG00000011658	rpa1	96	31.614	Acanthochromis_polyacanthus
YAR007C	RFA1	73	34.649	ENSAPOG00000019409	RPA1	65	34.649	Acanthochromis_polyacanthus
YAR007C	RFA1	95	31.954	ENSAMEG00000007706	RPA1	96	31.954	Ailuropoda_melanoleuca
YAR007C	RFA1	84	32.707	ENSACIG00000012881	RPA1	89	32.707	Amphilophus_citrinellus
YAR007C	RFA1	81	31.115	ENSACIG00000007277	rpa1	87	31.115	Amphilophus_citrinellus
YAR007C	RFA1	95	31.219	ENSAOCG00000023376	rpa1	96	31.219	Amphiprion_ocellaris
YAR007C	RFA1	95	31.553	ENSAPEG00000008634	rpa1	96	31.553	Amphiprion_percula
YAR007C	RFA1	91	31.315	ENSATEG00000022024	rpa1	97	31.315	Anabas_testudineus
YAR007C	RFA1	97	31.556	ENSAPLG00000012442	RPA1	99	31.563	Anas_platyrhynchos
YAR007C	RFA1	72	35.683	ENSACAG00000014490	RPA1	99	31.100	Anolis_carolinensis
YAR007C	RFA1	96	32.184	ENSANAG00000023456	RPA1	99	32.184	Aotus_nancymaae
YAR007C	RFA1	71	36.913	ENSACLG00000005223	RPA1	68	36.913	Astatotilapia_calliptera
YAR007C	RFA1	72	36.444	ENSACLG00000006640	rpa1	80	36.444	Astatotilapia_calliptera
YAR007C	RFA1	99	32.367	ENSAMXG00000008418	rpa1	99	32.577	Astyanax_mexicanus
YAR007C	RFA1	97	32.570	ENSBTAG00000009711	RPA1	97	32.570	Bos_taurus
YAR007C	RFA1	69	31.713	WBGene00017546	rpa-1	64	31.713	Caenorhabditis_elegans
YAR007C	RFA1	70	37.986	ENSCJAG00000001848	RPA1	99	32.212	Callithrix_jacchus
YAR007C	RFA1	97	31.856	ENSCAFG00000019249	RPA1	97	31.915	Canis_familiaris
YAR007C	RFA1	97	31.856	ENSCAFG00020009847	RPA1	97	31.915	Canis_lupus_dingo
YAR007C	RFA1	97	32.406	ENSCHIG00000026308	RPA1	97	32.406	Capra_hircus
YAR007C	RFA1	97	32.020	ENSTSYG00000003482	-	97	32.020	Carlito_syrichta
YAR007C	RFA1	97	32.020	ENSCPOG00000000035	RPA1	97	32.020	Cavia_porcellus
YAR007C	RFA1	89	30.277	ENSCCAG00000010981	RPA1	99	30.851	Cebus_capucinus
YAR007C	RFA1	97	30.972	ENSCLAG00000015045	-	97	30.972	Chinchilla_lanigera
YAR007C	RFA1	97	31.967	ENSCLAG00000005185	-	97	31.967	Chinchilla_lanigera
YAR007C	RFA1	87	33.735	ENSCSAG00000013833	RPA1	97	33.735	Chlorocebus_sabaeus
YAR007C	RFA1	68	38.588	ENSCHOG00000009454	-	95	38.588	Choloepus_hoffmanni
YAR007C	RFA1	68	38.588	ENSCHOG00000013540	-	71	38.588	Choloepus_hoffmanni
YAR007C	RFA1	97	31.981	ENSCPBG00000020377	RPA1	97	32.362	Chrysemys_picta_bellii
YAR007C	RFA1	98	33.387	ENSCING00000023482	-	98	33.387	Ciona_intestinalis
YAR007C	RFA1	68	38.824	ENSCANG00000030911	RPA1	73	38.824	Colobus_angolensis_palliatus
YAR007C	RFA1	98	32.045	ENSCGRG00001008197	Rpa1	98	32.045	Cricetulus_griseus_chok1gshd
YAR007C	RFA1	70	37.813	ENSCGRG00000000582	Rpa1	84	37.813	Cricetulus_griseus_crigri
YAR007C	RFA1	99	31.818	ENSCSEG00000012726	RPA1	98	31.818	Cynoglossus_semilaevis
YAR007C	RFA1	97	30.293	ENSCSEG00000013066	rpa1	97	30.293	Cynoglossus_semilaevis
YAR007C	RFA1	72	37.111	ENSCVAG00000019431	rpa1	94	31.419	Cyprinodon_variegatus
YAR007C	RFA1	67	34.772	ENSCVAG00000013446	-	61	34.772	Cyprinodon_variegatus
YAR007C	RFA1	97	32.237	ENSDARG00000003938	rpa1	97	32.237	Danio_rerio
YAR007C	RFA1	68	38.588	ENSDNOG00000017218	RPA1	68	38.588	Dasypus_novemcinctus
YAR007C	RFA1	99	32.212	ENSDORG00000006199	Rpa1	99	32.372	Dipodomys_ordii
YAR007C	RFA1	95	31.960	FBgn0010173	RpA-70	95	32.558	Drosophila_melanogaster
YAR007C	RFA1	81	31.884	ENSETEG00000017608	RPA1	81	31.884	Echinops_telfairi
YAR007C	RFA1	95	31.588	ENSEASG00005009372	RPA1	97	32.937	Equus_asinus_asinus
YAR007C	RFA1	97	32.566	ENSECAG00000023886	RPA1	97	32.730	Equus_caballus
YAR007C	RFA1	66	38.107	ENSEEUG00000002186	-	66	38.107	Erinaceus_europaeus
YAR007C	RFA1	99	31.122	ENSELUG00000021071	rpa1	99	31.161	Esox_lucius
YAR007C	RFA1	68	34.204	ENSELUG00000006136	RPA1	82	34.204	Esox_lucius
YAR007C	RFA1	97	32.026	ENSFCAG00000006306	RPA1	97	32.026	Felis_catus
YAR007C	RFA1	99	34.231	ENSFALG00000006575	RPA1	98	34.231	Ficedula_albicollis
YAR007C	RFA1	97	32.677	ENSFDAG00000007720	RPA1	97	32.677	Fukomys_damarensis
YAR007C	RFA1	93	31.399	ENSFHEG00000003580	rpa1	94	31.399	Fundulus_heteroclitus
YAR007C	RFA1	99	32.695	ENSGALG00000003072	RPA1	98	32.695	Gallus_gallus
YAR007C	RFA1	75	35.319	ENSGAFG00000020953	RPA1	69	35.319	Gambusia_affinis
YAR007C	RFA1	93	33.105	ENSGAFG00000012916	rpa1	94	33.105	Gambusia_affinis
YAR007C	RFA1	97	32.353	ENSGACG00000010856	rpa1	97	32.353	Gasterosteus_aculeatus
YAR007C	RFA1	99	32.222	ENSGAGG00000013611	RPA1	99	32.222	Gopherus_agassizii
YAR007C	RFA1	99	32.097	ENSGGOG00000014186	RPA1	99	32.097	Gorilla_gorilla
YAR007C	RFA1	72	30.684	ENSHBUG00000009348	RPA1	76	30.684	Haplochromis_burtoni
YAR007C	RFA1	94	31.481	ENSHBUG00000017773	rpa1	95	31.481	Haplochromis_burtoni
YAR007C	RFA1	97	32.131	ENSHGLG00000008846	RPA1	97	32.131	Heterocephalus_glaber_female
YAR007C	RFA1	66	35.539	ENSHGLG00100002005	-	66	36.090	Heterocephalus_glaber_male
YAR007C	RFA1	69	35.023	ENSHGLG00100000799	-	70	35.023	Heterocephalus_glaber_male
YAR007C	RFA1	97	32.131	ENSHGLG00100017755	-	97	32.131	Heterocephalus_glaber_male
YAR007C	RFA1	68	35.116	ENSHCOG00000000351	RPA1	73	35.294	Hippocampus_comes
YAR007C	RFA1	97	31.691	ENSHCOG00000001401	rpa1	97	31.967	Hippocampus_comes
YAR007C	RFA1	97	31.311	ENSIPUG00000004400	rpa1	97	31.518	Ictalurus_punctatus
YAR007C	RFA1	69	37.644	ENSSTOG00000022475	RPA1	71	37.644	Ictidomys_tridecemlineatus
YAR007C	RFA1	69	37.788	ENSJJAG00000000876	Rpa1	71	37.788	Jaculus_jaculus
YAR007C	RFA1	70	36.961	ENSKMAG00000005605	rpa1	94	32.264	Kryptolebias_marmoratus
YAR007C	RFA1	95	30.556	ENSKMAG00000000234	RPA1	96	30.556	Kryptolebias_marmoratus
YAR007C	RFA1	73	34.498	ENSLBEG00000002281	RPA1	67	34.498	Labrus_bergylta
YAR007C	RFA1	93	31.070	ENSLBEG00000021604	rpa1	94	31.336	Labrus_bergylta
YAR007C	RFA1	71	35.320	ENSLACG00000007210	RPA1	91	35.320	Latimeria_chalumnae
YAR007C	RFA1	93	32.021	ENSLOCG00000006397	rpa1	94	32.470	Lepisosteus_oculatus
YAR007C	RFA1	68	38.824	ENSLAFG00000015354	RPA1	67	38.824	Loxodonta_africana
YAR007C	RFA1	81	31.845	ENSMFAG00000036138	-	99	31.845	Macaca_fascicularis
YAR007C	RFA1	68	37.617	ENSMMUG00000002442	-	70	37.617	Macaca_mulatta
YAR007C	RFA1	68	38.588	ENSMMUG00000011604	-	97	32.215	Macaca_mulatta
YAR007C	RFA1	68	36.744	ENSMNEG00000029837	-	76	36.744	Macaca_nemestrina
YAR007C	RFA1	68	38.353	ENSMNEG00000031632	-	69	38.353	Macaca_nemestrina
YAR007C	RFA1	68	37.412	ENSMLEG00000038768	-	68	37.412	Mandrillus_leucophaeus
YAR007C	RFA1	70	35.321	ENSMAMG00000020097	RPA1	67	34.716	Mastacembelus_armatus
YAR007C	RFA1	94	32.715	ENSMAMG00000017993	rpa1	95	32.715	Mastacembelus_armatus
YAR007C	RFA1	93	31.570	ENSMZEG00005007551	rpa1	94	31.570	Maylandia_zebra
YAR007C	RFA1	71	36.913	ENSMZEG00005024731	RPA1	68	36.913	Maylandia_zebra
YAR007C	RFA1	97	33.059	ENSMGAG00000005315	RPA1	96	33.059	Meleagris_gallopavo
YAR007C	RFA1	95	32.007	ENSMAUG00000010474	Rpa1	99	32.007	Mesocricetus_auratus
YAR007C	RFA1	97	31.588	ENSMICG00000012867	RPA1	97	31.588	Microcebus_murinus
YAR007C	RFA1	98	32.577	ENSMOCG00000013019	Rpa1	98	32.577	Microtus_ochrogaster
YAR007C	RFA1	73	34.707	ENSMMOG00000010868	RPA1	76	34.707	Mola_mola
YAR007C	RFA1	93	31.641	ENSMMOG00000014292	rpa1	97	31.641	Mola_mola
YAR007C	RFA1	97	32.516	ENSMODG00000010549	RPA1	97	32.516	Monodelphis_domestica
YAR007C	RFA1	70	36.301	ENSMALG00000001208	RPA1	60	36.301	Monopterus_albus
YAR007C	RFA1	94	31.491	ENSMALG00000011453	rpa1	95	31.872	Monopterus_albus
YAR007C	RFA1	97	32.190	MGP_CAROLIEiJ_G0016734	Rpa1	97	32.190	Mus_caroli
YAR007C	RFA1	93	32.040	ENSMUSG00000000751	Rpa1	94	32.040	Mus_musculus
YAR007C	RFA1	97	31.656	MGP_PahariEiJ_G0017871	Rpa1	97	31.870	Mus_pahari
YAR007C	RFA1	69	37.819	MGP_SPRETEiJ_G0017577	Rpa1	94	31.481	Mus_spretus
YAR007C	RFA1	97	32.242	ENSMPUG00000013119	RPA1	97	32.242	Mustela_putorius_furo
YAR007C	RFA1	68	39.716	ENSMLUG00000006113	RPA1	67	39.716	Myotis_lucifugus
YAR007C	RFA1	69	37.875	ENSNGAG00000004522	Rpa1	68	37.875	Nannospalax_galili
YAR007C	RFA1	93	30.940	ENSNBRG00000009672	RPA1	92	30.940	Neolamprologus_brichardi
YAR007C	RFA1	72	36.444	ENSNBRG00000020595	rpa1	79	36.444	Neolamprologus_brichardi
YAR007C	RFA1	70	37.955	ENSNLEG00000017149	RPA1	99	31.621	Nomascus_leucogenys
YAR007C	RFA1	85	32.530	ENSMEUG00000006714	RPA1	87	32.530	Notamacropus_eugenii
YAR007C	RFA1	92	32.432	ENSODEG00000009038	RPA1	94	32.432	Octodon_degus
YAR007C	RFA1	93	31.864	ENSONIG00000013135	rpa1	94	31.864	Oreochromis_niloticus
YAR007C	RFA1	95	32.941	ENSOANG00000010880	RPA1	97	33.389	Ornithorhynchus_anatinus
YAR007C	RFA1	69	39.211	ENSOCUG00000001504	RPA1	65	39.211	Oryctolagus_cuniculus
YAR007C	RFA1	95	31.323	ENSORLG00000004856	rpa1	96	31.323	Oryzias_latipes
YAR007C	RFA1	72	35.045	ENSORLG00000003368	RPA1	67	35.045	Oryzias_latipes
YAR007C	RFA1	95	31.491	ENSORLG00020008980	rpa1	96	31.491	Oryzias_latipes_hni
YAR007C	RFA1	72	35.045	ENSORLG00020015284	RPA1	66	35.045	Oryzias_latipes_hni
YAR007C	RFA1	69	35.104	ENSORLG00015005867	-	97	35.104	Oryzias_latipes_hsok
YAR007C	RFA1	95	31.491	ENSORLG00015013982	rpa1	96	31.491	Oryzias_latipes_hsok
YAR007C	RFA1	72	35.045	ENSORLG00015020383	RPA1	69	35.045	Oryzias_latipes_hsok
YAR007C	RFA1	95	32.220	ENSOMEG00000004704	rpa1	96	32.220	Oryzias_melastigma
YAR007C	RFA1	69	35.731	ENSOMEG00000011040	RPA1	74	35.731	Oryzias_melastigma
YAR007C	RFA1	97	32.570	ENSOGAG00000005581	-	97	32.570	Otolemur_garnettii
YAR007C	RFA1	70	36.943	ENSOGAG00000029379	-	92	36.943	Otolemur_garnettii
YAR007C	RFA1	97	32.406	ENSOARG00000014479	RPA1	97	32.406	Ovis_aries
YAR007C	RFA1	99	32.000	ENSPPAG00000039680	RPA1	99	32.000	Pan_paniscus
YAR007C	RFA1	97	32.190	ENSPPRG00000011807	RPA1	97	32.190	Panthera_pardus
YAR007C	RFA1	97	32.190	ENSPTIG00000007898	RPA1	97	32.190	Panthera_tigris_altaica
YAR007C	RFA1	99	31.782	ENSPTRG00000008539	RPA1	99	31.782	Pan_troglodytes
YAR007C	RFA1	97	32.131	ENSPANG00000024592	RPA1	97	32.131	Papio_anubis
YAR007C	RFA1	94	32.264	ENSPKIG00000008053	rpa1	94	32.274	Paramormyrops_kingsleyae
YAR007C	RFA1	95	32.784	ENSPSIG00000015617	RPA1	98	32.784	Pelodiscus_sinensis
YAR007C	RFA1	68	37.793	ENSPMGG00000011589	rpa1	73	38.152	Periophthalmus_magnuspinnatus
YAR007C	RFA1	72	35.268	ENSPMGG00000000543	RPA1	79	35.268	Periophthalmus_magnuspinnatus
YAR007C	RFA1	98	32.091	ENSPEMG00000021061	Rpa1	98	32.091	Peromyscus_maniculatus_bairdii
YAR007C	RFA1	99	31.621	ENSPCIG00000019049	RPA1	99	32.428	Phascolarctos_cinereus
YAR007C	RFA1	93	32.021	ENSPFOG00000003987	rpa1	94	32.021	Poecilia_formosa
YAR007C	RFA1	65	37.192	ENSPLAG00000008844	-	62	37.192	Poecilia_latipinna
YAR007C	RFA1	93	32.021	ENSPLAG00000004984	rpa1	94	32.021	Poecilia_latipinna
YAR007C	RFA1	93	32.021	ENSPMEG00000020602	rpa1	94	32.021	Poecilia_mexicana
YAR007C	RFA1	69	36.215	ENSPMEG00000003627	-	65	36.215	Poecilia_mexicana
YAR007C	RFA1	75	35.332	ENSPREG00000010119	RPA1	67	35.332	Poecilia_reticulata
YAR007C	RFA1	97	31.424	ENSPCOG00000001799	RPA1	97	31.424	Propithecus_coquereli
YAR007C	RFA1	97	31.915	ENSPVAG00000002149	RPA1	97	31.915	Pteropus_vampyrus
YAR007C	RFA1	71	36.689	ENSPNYG00000024165	RPA1	68	36.689	Pundamilia_nyererei
YAR007C	RFA1	94	31.481	ENSPNYG00000016316	rpa1	95	31.481	Pundamilia_nyererei
YAR007C	RFA1	69	34.259	ENSPNAG00000008599	rpa1	93	30.017	Pygocentrus_nattereri
YAR007C	RFA1	97	32.623	ENSRNOG00000003123	Rpa1	97	32.623	Rattus_norvegicus
YAR007C	RFA1	97	32.131	ENSRBIG00000036587	RPA1	97	32.131	Rhinopithecus_bieti
YAR007C	RFA1	97	30.392	ENSRROG00000043278	RPA1	97	30.392	Rhinopithecus_roxellana
YAR007C	RFA1	70	38.215	ENSSBOG00000030233	RPA1	74	38.215	Saimiri_boliviensis_boliviensis
YAR007C	RFA1	68	37.825	ENSSHAG00000007969	RPA1	95	31.947	Sarcophilus_harrisii
YAR007C	RFA1	93	32.419	ENSSFOG00015005362	rpa1	87	32.447	Scleropages_formosus
YAR007C	RFA1	71	34.685	ENSSMAG00000019746	RPA1	66	34.685	Scophthalmus_maximus
YAR007C	RFA1	97	32.026	ENSSDUG00000011949	rpa1	97	32.026	Seriola_dumerili
YAR007C	RFA1	70	36.009	ENSSDUG00000016358	RPA1	67	35.065	Seriola_dumerili
YAR007C	RFA1	97	31.863	ENSSLDG00000011806	rpa1	97	31.863	Seriola_lalandi_dorsalis
YAR007C	RFA1	70	36.009	ENSSLDG00000020784	RPA1	66	35.065	Seriola_lalandi_dorsalis
YAR007C	RFA1	95	32.779	ENSSPUG00000007223	RPA1	98	32.779	Sphenodon_punctatus
YAR007C	RFA1	94	32.107	ENSSPAG00000009903	rpa1	95	32.107	Stegastes_partitus
YAR007C	RFA1	96	31.466	ENSSPAG00000011165	RPA1	97	30.769	Stegastes_partitus
YAR007C	RFA1	97	32.397	ENSSSCG00000017822	RPA1	97	32.397	Sus_scrofa
YAR007C	RFA1	99	34.022	ENSTGUG00000005775	RPA1	98	34.022	Taeniopygia_guttata
YAR007C	RFA1	68	37.972	ENSTRUG00000000405	RPA1	58	37.972	Takifugu_rubripes
YAR007C	RFA1	93	32.935	ENSTRUG00000003616	rpa1	94	32.935	Takifugu_rubripes
YAR007C	RFA1	93	32.939	ENSTNIG00000016199	rpa1	94	33.163	Tetraodon_nigroviridis
YAR007C	RFA1	68	38.298	ENSTBEG00000002709	RPA1	70	38.298	Tupaia_belangeri
YAR007C	RFA1	68	39.243	ENSTTRG00000001169	RPA1	68	39.243	Tursiops_truncatus
YAR007C	RFA1	60	54.386	ENSUAMG00000015676	RPA1	98	31.450	Ursus_americanus
YAR007C	RFA1	68	38.118	ENSUMAG00000009328	RPA1	97	31.915	Ursus_maritimus
YAR007C	RFA1	93	31.973	ENSVPAG00000009443	RPA1	94	31.973	Vicugna_pacos
YAR007C	RFA1	97	31.856	ENSVVUG00000021715	RPA1	97	31.915	Vulpes_vulpes
YAR007C	RFA1	68	36.879	ENSXETG00000013538	rpa1	68	37.116	Xenopus_tropicalis
YAR007C	RFA1	75	35.546	ENSXCOG00000009899	-	82	35.546	Xiphophorus_couchianus
YAR007C	RFA1	90	31.874	ENSXCOG00000010068	rpa1	94	31.794	Xiphophorus_couchianus
YAR007C	RFA1	93	32.534	ENSXMAG00000004102	rpa1	94	32.534	Xiphophorus_maculatus
YAR007C	RFA1	75	35.106	ENSXMAG00000010333	RPA1	65	35.106	Xiphophorus_maculatus