EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YBL004W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Component of the small-subunit (SSU) processome%3B SSU processome is involved in the biogenesis of the 18S rRNA
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 7482 bases
Position: chrII:227636-235117
Accession: S000000100
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YBL004W_mRNA	DRIM	PF07539.12	3e-161	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YBL004W_mRNA	-	7482	-	YBL004W_mRNA	2493 (aa)	-	P35194

Gene Model

Click here to download YBL004W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YBL004W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YBL004W	-	77	30.137	ENSGMOG00000006762	utp20	73	30.137	Gadus_morhua
YBL004W	-	53	35.531	ENSLACG00000010098	UTP20	74	35.531	Latimeria_chalumnae
YBL004W	-	71	38.095	ENSLOCG00000015197	utp20	79	38.095	Lepisosteus_oculatus
YBL004W	-	54	36.652	ENSOPRG00000010546	UTP20	54	32.911	Ochotona_princeps
YBL004W	-	64	35.808	ENSONIG00000009910	utp20	78	35.808	Oreochromis_niloticus
YBL004W	-	75	30.435	ENSSFOG00015001674	utp20	81	30.435	Scleropages_formosus
YBL004W	-	52	37.104	ENSTGUG00000009053	-	73	37.104	Taeniopygia_guttata