EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YBL024W (Gene tree)
Gene ID: -
Gene Symbol: NCL1
Alias: TRM4
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 2055
Position: chrII:172534-174588
Accession: S000000120
RBP type: canonical RBP
Summary: S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase%3B methylates cytosine to m5C at several positions in tRNAs and intron-containing pre-tRNAs%3B increases proportion of tRNALeu(CAA) with m5C at wobble position in response to hydrogen peroxide%2C causing selective translation of mRNA from genes enriched in TTG codon%3B loss of NCL1 confers hypersensitivity to oxidative stress%3B similar to Nop2p and human proliferation associated nucleolar protein p120

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YBL024W_mRNA	Methyltr_RsmB-F	PF01189.17	3.2e-42	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YBL024W_mRNA	-	2055	-	YBL024W_mRNA	684 (aa)	-	P38205

Gene Model

Click here to download YBL024W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YBL024W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YBL024W	NCL1	96	35.425	ENSG00000037474	NSUN2	89	35.994	Homo_sapiens
YBL024W	NCL1	94	37.587	ENSAPOG00000000894	nsun2	87	37.587	Acanthochromis_polyacanthus
YBL024W	NCL1	97	35.586	ENSAMEG00000002744	NSUN2	89	36.259	Ailuropoda_melanoleuca
YBL024W	NCL1	94	37.122	ENSACIG00000013142	nsun2	91	37.176	Amphilophus_citrinellus
YBL024W	NCL1	94	36.996	ENSAOCG00000019227	nsun2	91	36.996	Amphiprion_ocellaris
YBL024W	NCL1	94	37.274	ENSAPEG00000002772	nsun2	91	37.274	Amphiprion_percula
YBL024W	NCL1	94	38.375	ENSATEG00000006961	nsun2	91	38.375	Anabas_testudineus
YBL024W	NCL1	84	36.850	ENSAPLG00000011518	NSUN2	87	36.850	Anas_platyrhynchos
YBL024W	NCL1	97	37.518	ENSACAG00000000677	NSUN2	84	37.698	Anolis_carolinensis
YBL024W	NCL1	96	35.425	ENSANAG00000034451	NSUN2	90	36.236	Aotus_nancymaae
YBL024W	NCL1	94	37.622	ENSACLG00000014258	nsun2	90	37.622	Astatotilapia_calliptera
YBL024W	NCL1	95	37.535	ENSAMXG00000017682	nsun2	91	38.365	Astyanax_mexicanus
YBL024W	NCL1	93	36.705	ENSBTAG00000015466	NSUN2	93	35.628	Bos_taurus
YBL024W	NCL1	99	33.380	WBGene00021686	Y48G8AL.5	90	34.087	Caenorhabditis_elegans
YBL024W	NCL1	92	35.942	ENSCJAG00000008689	NSUN2	65	37.156	Callithrix_jacchus
YBL024W	NCL1	97	36.439	ENSCAFG00000010334	NSUN2	92	35.488	Canis_familiaris
YBL024W	NCL1	90	36.553	ENSCAFG00020022862	NSUN2	94	35.536	Canis_lupus_dingo
YBL024W	NCL1	94	36.377	ENSCHIG00000019385	NSUN2	94	36.377	Capra_hircus
YBL024W	NCL1	97	35.605	ENSTSYG00000005709	NSUN2	93	35.335	Carlito_syrichta
YBL024W	NCL1	85	36.505	ENSCAPG00000013519	NSUN2	91	37.213	Cavia_aperea
YBL024W	NCL1	97	36.265	ENSCPOG00000008196	NSUN2	92	36.517	Cavia_porcellus
YBL024W	NCL1	96	35.385	ENSCCAG00000025648	-	89	35.994	Cebus_capucinus
YBL024W	NCL1	72	38.462	ENSCCAG00000034245	-	87	38.504	Cebus_capucinus
YBL024W	NCL1	95	35.673	ENSCATG00000042165	-	92	35.819	Cercocebus_atys
YBL024W	NCL1	96	35.565	ENSCATG00000045020	-	89	36.139	Cercocebus_atys
YBL024W	NCL1	95	34.225	ENSCLAG00000003188	NSUN2	99	33.978	Chinchilla_lanigera
YBL024W	NCL1	98	35.448	ENSCSAG00000017339	NSUN2	89	35.931	Chlorocebus_sabaeus
YBL024W	NCL1	91	37.850	ENSCPBG00000006615	NSUN2	88	36.879	Chrysemys_picta_bellii
YBL024W	NCL1	88	39.130	ENSCING00000009504	-	96	39.655	Ciona_intestinalis
YBL024W	NCL1	88	41.440	ENSCSAVG00000001710	-	93	41.440	Ciona_savignyi
YBL024W	NCL1	97	35.417	ENSCANG00000029527	NSUN2	91	35.983	Colobus_angolensis_palliatus
YBL024W	NCL1	99	35.827	ENSCGRG00001003947	Nsun2	93	36.938	Cricetulus_griseus_chok1gshd
YBL024W	NCL1	96	36.027	ENSCGRG00000005703	Nsun2	93	37.151	Cricetulus_griseus_crigri
YBL024W	NCL1	71	41.698	ENSCVAG00000021836	nsun2	80	41.698	Cyprinodon_variegatus
YBL024W	NCL1	99	36.942	ENSDARG00000056665	nsun2	91	37.624	Danio_rerio
YBL024W	NCL1	90	35.935	ENSDNOG00000013848	NSUN2	97	35.546	Dasypus_novemcinctus
YBL024W	NCL1	91	36.657	ENSDORG00000010247	Nsun2	92	36.957	Dipodomys_ordii
YBL024W	NCL1	94	35.234	FBgn0026079	Nsun2	90	35.234	Drosophila_melanogaster
YBL024W	NCL1	73	51.661	ENSETEG00000000983	NSUN2	65	48.986	Echinops_telfairi
YBL024W	NCL1	95	31.617	ENSEBUG00000006751	nsun2	87	31.617	Eptatretus_burgeri
YBL024W	NCL1	98	34.890	ENSEASG00005018580	NSUN2	94	34.753	Equus_asinus_asinus
YBL024W	NCL1	98	34.890	ENSECAG00000016357	NSUN2	94	34.753	Equus_caballus
YBL024W	NCL1	64	31.984	ENSEEUG00000001691	NSUN2	99	31.984	Erinaceus_europaeus
YBL024W	NCL1	97	36.900	ENSELUG00000024082	nsun2	88	37.358	Esox_lucius
YBL024W	NCL1	96	36.068	ENSFCAG00000015602	NSUN2	93	36.209	Felis_catus
YBL024W	NCL1	91	36.618	ENSFALG00000007188	NSUN2	88	35.960	Ficedula_albicollis
YBL024W	NCL1	94	36.338	ENSFDAG00000003589	NSUN2	94	37.185	Fukomys_damarensis
YBL024W	NCL1	92	37.122	ENSFHEG00000017930	nsun2	91	36.761	Fundulus_heteroclitus
YBL024W	NCL1	57	36.658	ENSGMOG00000008921	nsun2	99	34.607	Gadus_morhua
YBL024W	NCL1	95	37.482	ENSGALG00000013064	NSUN2	89	37.238	Gallus_gallus
YBL024W	NCL1	94	36.234	ENSGAFG00000018743	nsun2	92	36.234	Gambusia_affinis
YBL024W	NCL1	86	36.672	ENSGACG00000008974	nsun2	98	37.288	Gasterosteus_aculeatus
YBL024W	NCL1	96	37.011	ENSGAGG00000015773	NSUN2	93	39.072	Gopherus_agassizii
YBL024W	NCL1	96	35.565	ENSGGOG00000016583	NSUN2	89	36.139	Gorilla_gorilla
YBL024W	NCL1	94	36.886	ENSHBUG00000022199	nsun2	90	36.886	Haplochromis_burtoni
YBL024W	NCL1	92	37.064	ENSHGLG00000013825	NSUN2	90	37.101	Heterocephalus_glaber_female
YBL024W	NCL1	91	37.573	ENSHGLG00100013746	NSUN2	99	37.573	Heterocephalus_glaber_male
YBL024W	NCL1	92	37.482	ENSHCOG00000020484	nsun2	89	37.861	Hippocampus_comes
YBL024W	NCL1	94	36.984	ENSIPUG00000014849	nsun2	90	37.607	Ictalurus_punctatus
YBL024W	NCL1	96	36.695	ENSSTOG00000004090	NSUN2	90	36.705	Ictidomys_tridecemlineatus
YBL024W	NCL1	98	36.525	ENSJJAG00000013996	Nsun2	94	36.088	Jaculus_jaculus
YBL024W	NCL1	94	36.477	ENSKMAG00000000810	nsun2	93	36.755	Kryptolebias_marmoratus
YBL024W	NCL1	94	37.199	ENSLBEG00000025697	nsun2	91	37.027	Labrus_bergylta
YBL024W	NCL1	97	37.052	ENSLOCG00000008755	nsun2	90	37.768	Lepisosteus_oculatus
YBL024W	NCL1	92	37.085	ENSLAFG00000009411	NSUN2	95	37.085	Loxodonta_africana
YBL024W	NCL1	96	35.565	ENSMFAG00000045240	NSUN2	89	36.139	Macaca_fascicularis
YBL024W	NCL1	96	35.565	ENSMMUG00000002561	NSUN2	89	36.139	Macaca_mulatta
YBL024W	NCL1	96	36.415	ENSMNEG00000033485	NSUN2	89	36.139	Macaca_nemestrina
YBL024W	NCL1	96	35.524	ENSMLEG00000017173	NSUN2	91	36.099	Mandrillus_leucophaeus
YBL024W	NCL1	95	36.161	ENSMAMG00000004850	nsun2	91	36.630	Mastacembelus_armatus
YBL024W	NCL1	94	37.622	ENSMZEG00005000101	nsun2	90	36.746	Maylandia_zebra
YBL024W	NCL1	95	37.465	ENSMGAG00000006349	NSUN2	91	37.465	Meleagris_gallopavo
YBL024W	NCL1	94	36.606	ENSMAUG00000014207	Nsun2	93	36.606	Mesocricetus_auratus
YBL024W	NCL1	93	36.469	ENSMICG00000016549	NSUN2	84	36.508	Microcebus_murinus
YBL024W	NCL1	99	35.620	ENSMOCG00000009613	Nsun2	93	36.864	Microtus_ochrogaster
YBL024W	NCL1	99	36.779	ENSMMOG00000021188	nsun2	92	37.447	Mola_mola
YBL024W	NCL1	97	36.389	ENSMODG00000002039	NSUN2	86	37.196	Monodelphis_domestica
YBL024W	NCL1	98	38.129	ENSMALG00000002740	nsun2	91	38.855	Monopterus_albus
YBL024W	NCL1	97	35.501	MGP_CAROLIEiJ_G0018690	Nsun2	92	36.466	Mus_caroli
YBL024W	NCL1	97	35.550	ENSMUSG00000021595	Nsun2	92	36.672	Mus_musculus
YBL024W	NCL1	97	35.637	MGP_PahariEiJ_G0015771	Nsun2	92	36.728	Mus_pahari
YBL024W	NCL1	97	35.685	MGP_SPRETEiJ_G0019574	Nsun2	92	36.826	Mus_spretus
YBL024W	NCL1	91	35.830	ENSMPUG00000007561	NSUN2	88	36.518	Mustela_putorius_furo
YBL024W	NCL1	96	36.325	ENSMLUG00000009609	NSUN2	91	36.261	Myotis_lucifugus
YBL024W	NCL1	98	35.479	ENSNGAG00000007424	Nsun2	90	36.696	Nannospalax_galili
YBL024W	NCL1	96	35.744	ENSNLEG00000011344	NSUN2	89	36.272	Nomascus_leucogenys
YBL024W	NCL1	83	36.262	ENSOPRG00000011324	NSUN2	92	36.683	Ochotona_princeps
YBL024W	NCL1	95	36.428	ENSODEG00000018305	NSUN2	98	34.840	Octodon_degus
YBL024W	NCL1	94	37.946	ENSONIG00000007761	nsun2	90	38.000	Oreochromis_niloticus
YBL024W	NCL1	91	36.638	ENSOANG00000009243	NSUN2	87	37.348	Ornithorhynchus_anatinus
YBL024W	NCL1	87	35.988	ENSOCUG00000007918	NSUN2	92	36.538	Oryctolagus_cuniculus
YBL024W	NCL1	94	37.271	ENSORLG00000014332	nsun2	91	37.271	Oryzias_latipes
YBL024W	NCL1	94	36.990	ENSORLG00020019799	nsun2	92	36.990	Oryzias_latipes_hni
YBL024W	NCL1	94	36.990	ENSORLG00015007992	nsun2	91	36.990	Oryzias_latipes_hsok
YBL024W	NCL1	94	36.782	ENSOMEG00000013504	nsun2	92	36.729	Oryzias_melastigma
YBL024W	NCL1	95	36.146	ENSOGAG00000015015	NSUN2	88	36.351	Otolemur_garnettii
YBL024W	NCL1	91	36.457	ENSOARG00000015042	NSUN2	90	35.448	Ovis_aries
YBL024W	NCL1	96	35.794	ENSPPAG00000036124	NSUN2	89	36.377	Pan_paniscus
YBL024W	NCL1	97	35.205	ENSPPRG00000001946	NSUN2	93	36.068	Panthera_pardus
YBL024W	NCL1	98	34.345	ENSPTIG00000013257	NSUN2	95	35.022	Panthera_tigris_altaica
YBL024W	NCL1	96	35.933	ENSPTRG00000016715	NSUN2	89	36.522	Pan_troglodytes
YBL024W	NCL1	96	35.565	ENSPANG00000004215	NSUN2	89	36.139	Papio_anubis
YBL024W	NCL1	98	37.377	ENSPKIG00000024200	nsun2	90	38.117	Paramormyrops_kingsleyae
YBL024W	NCL1	84	36.884	ENSPSIG00000015282	NSUN2	86	36.884	Pelodiscus_sinensis
YBL024W	NCL1	95	32.486	ENSPMGG00000004138	nsun2	93	32.673	Periophthalmus_magnuspinnatus
YBL024W	NCL1	95	35.626	ENSPEMG00000021790	Nsun2	90	36.628	Peromyscus_maniculatus_bairdii
YBL024W	NCL1	92	37.536	ENSPCIG00000011853	NSUN2	86	37.536	Phascolarctos_cinereus
YBL024W	NCL1	94	35.745	ENSPFOG00000004139	nsun2	92	36.364	Poecilia_formosa
YBL024W	NCL1	94	36.080	ENSPLAG00000007091	nsun2	92	36.080	Poecilia_latipinna
YBL024W	NCL1	94	35.887	ENSPMEG00000000122	nsun2	92	36.506	Poecilia_mexicana
YBL024W	NCL1	95	36.700	ENSPREG00000017479	nsun2	92	36.752	Poecilia_reticulata
YBL024W	NCL1	96	35.286	ENSPPYG00000015332	NSUN2	89	35.797	Pongo_abelii
YBL024W	NCL1	66	37.795	ENSPCAG00000010931	NSUN2	69	34.437	Procavia_capensis
YBL024W	NCL1	93	33.527	ENSPCOG00000012979	NSUN2	89	33.575	Propithecus_coquereli
YBL024W	NCL1	97	35.270	ENSPVAG00000010643	NSUN2	99	35.027	Pteropus_vampyrus
YBL024W	NCL1	94	37.151	ENSPNYG00000010677	nsun2	90	37.151	Pundamilia_nyererei
YBL024W	NCL1	80	37.374	ENSPNAG00000006827	nsun2	82	37.205	Pygocentrus_nattereri
YBL024W	NCL1	95	36.100	ENSRNOG00000017254	Nsun2	86	36.972	Rattus_norvegicus
YBL024W	NCL1	96	35.565	ENSRBIG00000035794	NSUN2	89	36.139	Rhinopithecus_bieti
YBL024W	NCL1	96	35.565	ENSRROG00000035277	NSUN2	89	36.139	Rhinopithecus_roxellana
YBL024W	NCL1	92	36.232	ENSSBOG00000035262	NSUN2	89	36.232	Saimiri_boliviensis_boliviensis
YBL024W	NCL1	92	36.925	ENSSHAG00000011056	NSUN2	95	36.925	Sarcophilus_harrisii
YBL024W	NCL1	94	38.362	ENSSFOG00015001631	nsun2	90	38.362	Scleropages_formosus
YBL024W	NCL1	94	37.902	ENSSMAG00000020669	nsun2	92	38.182	Scophthalmus_maximus
YBL024W	NCL1	94	37.588	ENSSDUG00000002080	nsun2	91	37.868	Seriola_dumerili
YBL024W	NCL1	94	37.994	ENSSLDG00000004496	nsun2	91	38.136	Seriola_lalandi_dorsalis
YBL024W	NCL1	81	39.868	ENSSPUG00000008865	NSUN2	80	38.730	Sphenodon_punctatus
YBL024W	NCL1	94	36.718	ENSSPAG00000003665	nsun2	91	37.413	Stegastes_partitus
YBL024W	NCL1	94	37.179	ENSSSCG00000017104	NSUN2	86	37.192	Sus_scrofa
YBL024W	NCL1	90	37.722	ENSTGUG00000007789	NSUN2	99	37.722	Taeniopygia_guttata
YBL024W	NCL1	97	35.462	ENSTRUG00000011788	nsun2	93	36.072	Takifugu_rubripes
YBL024W	NCL1	95	36.671	ENSTNIG00000009258	nsun2	92	37.281	Tetraodon_nigroviridis
YBL024W	NCL1	57	46.231	ENSTBEG00000014695	NSUN2	54	46.231	Tupaia_belangeri
YBL024W	NCL1	98	34.025	ENSTTRG00000012662	NSUN2	90	34.588	Tursiops_truncatus
YBL024W	NCL1	96	36.351	ENSUAMG00000024741	NSUN2	82	48.538	Ursus_americanus
YBL024W	NCL1	98	32.782	ENSUMAG00000021149	NSUN2	90	36.826	Ursus_maritimus
YBL024W	NCL1	91	35.337	ENSVVUG00000017691	NSUN2	94	35.191	Vulpes_vulpes
YBL024W	NCL1	92	36.284	ENSXETG00000001732	nsun2	85	36.139	Xenopus_tropicalis
YBL024W	NCL1	94	36.835	ENSXCOG00000002584	nsun2	92	36.558	Xiphophorus_couchianus
YBL024W	NCL1	94	36.805	ENSXMAG00000013597	nsun2	92	36.428	Xiphophorus_maculatus