EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YBL026W (Gene tree)
Gene ID: -
Gene Symbol: LSM2
Alias: SMX5|SNP3
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 416
Position: chrII:170623-171038
Accession: S000000122
RBP type: canonical RBP
Summary: Lsm (Like Sm) protein%3B part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay%3B nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA%2C snoRNA%2C and rRNA%3B relocalizes from nucleus to cytoplasmic foci upon DNA replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YBL026W_mRNA	LSM	PF01423.22	3.5e-19	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YBL026W_mRNA	-	288	-	YBL026W_mRNA	95 (aa)	-	P38203

Gene Model

Click here to download YBL026W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YBL026W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YBL026W	LSM2	100	63.158	ENSG00000204392	LSM2	100	63.158	Homo_sapiens
YBL026W	LSM2	100	64.211	ENSAPOG00000017967	si:ch73-14h10.2	100	64.211	Acanthochromis_polyacanthus
YBL026W	LSM2	99	62.766	ENSAMEG00000006483	LSM2	100	62.766	Ailuropoda_melanoleuca
YBL026W	LSM2	99	63.830	ENSACIG00000007795	si:ch73-14h10.2	62	63.830	Amphilophus_citrinellus
YBL026W	LSM2	99	63.830	ENSAOCG00000006949	si:ch73-14h10.2	78	63.830	Amphiprion_ocellaris
YBL026W	LSM2	99	63.830	ENSAPEG00000020375	si:ch73-14h10.2	87	63.830	Amphiprion_percula
YBL026W	LSM2	100	64.211	ENSATEG00000011376	si:ch73-14h10.2	100	64.211	Anabas_testudineus
YBL026W	LSM2	99	62.766	ENSACAG00000017281	LSM2	90	62.766	Anolis_carolinensis
YBL026W	LSM2	100	63.158	ENSANAG00000028372	LSM2	100	63.158	Aotus_nancymaae
YBL026W	LSM2	80	55.263	ENSANAG00000028033	-	82	55.263	Aotus_nancymaae
YBL026W	LSM2	100	64.211	ENSACLG00000024717	smx5	100	64.211	Astatotilapia_calliptera
YBL026W	LSM2	100	64.211	ENSAMXG00000036868	si:ch73-14h10.2	100	64.211	Astyanax_mexicanus
YBL026W	LSM2	100	63.158	ENSBTAG00000005634	LSM2	100	63.158	Bos_taurus
YBL026W	LSM2	99	58.511	WBGene00001808	gut-2	97	58.511	Caenorhabditis_elegans
YBL026W	LSM2	100	63.158	ENSCJAG00000040899	LSM2	100	63.158	Callithrix_jacchus
YBL026W	LSM2	75	59.155	ENSCAFG00020016978	-	88	59.155	Canis_lupus_dingo
YBL026W	LSM2	99	62.766	ENSCHIG00000016153	LSM2	100	62.766	Capra_hircus
YBL026W	LSM2	100	63.158	ENSTSYG00000034844	LSM2	100	63.158	Carlito_syrichta
YBL026W	LSM2	99	60.638	ENSTSYG00000030015	-	100	60.638	Carlito_syrichta
YBL026W	LSM2	75	60.563	ENSCAPG00000009970	LSM2	91	60.563	Cavia_aperea
YBL026W	LSM2	100	63.158	ENSCPOG00000021053	LSM2	100	63.158	Cavia_porcellus
YBL026W	LSM2	100	63.158	ENSCCAG00000024276	LSM2	100	63.158	Cebus_capucinus
YBL026W	LSM2	100	63.158	ENSCATG00000013737	LSM2	100	63.158	Cercocebus_atys
YBL026W	LSM2	100	63.158	ENSCLAG00000008081	LSM2	100	63.158	Chinchilla_lanigera
YBL026W	LSM2	100	63.158	ENSCSAG00000008800	LSM2	100	63.158	Chlorocebus_sabaeus
YBL026W	LSM2	100	63.158	ENSCHOG00000007702	LSM2	100	63.158	Choloepus_hoffmanni
YBL026W	LSM2	100	62.105	ENSCING00000022677	-	100	62.105	Ciona_intestinalis
YBL026W	LSM2	100	63.158	ENSCANG00000039576	LSM2	100	63.158	Colobus_angolensis_palliatus
YBL026W	LSM2	100	63.158	ENSCGRG00001013932	Lsm2	100	63.158	Cricetulus_griseus_chok1gshd
YBL026W	LSM2	76	59.722	ENSCGRG00000013311	Lsm2	62	59.722	Cricetulus_griseus_crigri
YBL026W	LSM2	100	64.211	ENSCSEG00000002911	si:ch73-14h10.2	100	64.211	Cynoglossus_semilaevis
YBL026W	LSM2	99	63.830	ENSCVAG00000015394	si:ch73-14h10.2	89	63.830	Cyprinodon_variegatus
YBL026W	LSM2	100	63.158	ENSDARG00000070867	smx5	100	63.158	Danio_rerio
YBL026W	LSM2	99	62.766	ENSDNOG00000002633	LSM2	100	62.766	Dasypus_novemcinctus
YBL026W	LSM2	100	63.158	ENSDORG00000026571	Lsm2	100	63.158	Dipodomys_ordii
YBL026W	LSM2	100	64.211	FBgn0036277	CG10418	100	64.211	Drosophila_melanogaster
YBL026W	LSM2	99	62.766	ENSEASG00005015670	LSM2	79	62.766	Equus_asinus_asinus
YBL026W	LSM2	99	62.766	ENSECAG00000018791	LSM2	79	62.766	Equus_caballus
YBL026W	LSM2	100	63.158	ENSELUG00000008241	smx5	100	63.158	Esox_lucius
YBL026W	LSM2	100	63.158	ENSFCAG00000045887	LSM2	100	63.158	Felis_catus
YBL026W	LSM2	100	63.158	ENSFDAG00000000390	LSM2	100	63.158	Fukomys_damarensis
YBL026W	LSM2	99	62.500	ENSFHEG00000009619	si:ch73-14h10.2	100	62.500	Fundulus_heteroclitus
YBL026W	LSM2	99	63.830	ENSGMOG00000019208	si:ch73-14h10.2	100	63.830	Gadus_morhua
YBL026W	LSM2	100	64.211	ENSGAFG00000017286	si:ch73-14h10.2	100	64.211	Gambusia_affinis
YBL026W	LSM2	100	64.211	ENSGACG00000003827	si:ch73-14h10.2	100	64.211	Gasterosteus_aculeatus
YBL026W	LSM2	100	63.158	ENSGAGG00000012458	LSM2	100	63.158	Gopherus_agassizii
YBL026W	LSM2	100	63.158	ENSGGOG00000011383	LSM2	100	63.158	Gorilla_gorilla
YBL026W	LSM2	100	63.158	ENSHGLG00000011299	LSM2	100	63.158	Heterocephalus_glaber_female
YBL026W	LSM2	100	63.158	ENSHGLG00100017194	LSM2	100	63.158	Heterocephalus_glaber_male
YBL026W	LSM2	100	64.211	ENSHCOG00000014057	si:ch73-14h10.2	100	64.211	Hippocampus_comes
YBL026W	LSM2	100	64.211	ENSIPUG00000010539	lsm2	100	64.211	Ictalurus_punctatus
YBL026W	LSM2	100	63.158	ENSSTOG00000013144	LSM2	100	63.158	Ictidomys_tridecemlineatus
YBL026W	LSM2	94	48.315	ENSJJAG00000019477	-	100	48.315	Jaculus_jaculus
YBL026W	LSM2	100	64.211	ENSKMAG00000014909	si:ch73-14h10.2	100	64.211	Kryptolebias_marmoratus
YBL026W	LSM2	99	63.830	ENSLBEG00000025781	si:ch73-14h10.2	98	63.830	Labrus_bergylta
YBL026W	LSM2	100	64.211	ENSLACG00000015064	LSM2	100	64.211	Latimeria_chalumnae
YBL026W	LSM2	100	64.211	ENSLOCG00000005228	si:ch73-14h10.2	100	64.211	Lepisosteus_oculatus
YBL026W	LSM2	99	62.766	ENSLAFG00000016139	LSM2	100	62.766	Loxodonta_africana
YBL026W	LSM2	100	63.158	ENSMFAG00000001016	LSM2	100	63.158	Macaca_fascicularis
YBL026W	LSM2	100	63.158	ENSMMUG00000006832	LSM2	100	63.158	Macaca_mulatta
YBL026W	LSM2	99	52.128	ENSMMUG00000045473	-	97	52.128	Macaca_mulatta
YBL026W	LSM2	79	50.667	ENSMNEG00000040973	-	91	50.667	Macaca_nemestrina
YBL026W	LSM2	100	63.158	ENSMNEG00000045355	LSM2	100	63.158	Macaca_nemestrina
YBL026W	LSM2	100	63.158	ENSMLEG00000037369	-	100	63.158	Mandrillus_leucophaeus
YBL026W	LSM2	99	53.191	ENSMLEG00000031181	-	97	53.191	Mandrillus_leucophaeus
YBL026W	LSM2	100	64.211	ENSMAMG00000010053	si:ch73-14h10.2	73	64.211	Mastacembelus_armatus
YBL026W	LSM2	99	62.500	ENSMZEG00005008688	si:ch73-14h10.2	100	62.500	Maylandia_zebra
YBL026W	LSM2	100	63.158	ENSMAUG00000021966	Lsm2	100	63.158	Mesocricetus_auratus
YBL026W	LSM2	76	45.833	ENSMICG00000046764	-	92	45.833	Microcebus_murinus
YBL026W	LSM2	100	63.158	ENSMOCG00000015306	Lsm2	100	63.158	Microtus_ochrogaster
YBL026W	LSM2	99	63.830	ENSMMOG00000005603	si:ch73-14h10.2	100	63.830	Mola_mola
YBL026W	LSM2	99	63.830	ENSMODG00000015177	LSM2	99	63.830	Monodelphis_domestica
YBL026W	LSM2	100	64.211	ENSMALG00000016490	si:ch73-14h10.2	100	64.211	Monopterus_albus
YBL026W	LSM2	100	63.158	MGP_CAROLIEiJ_G0021490	Lsm2	100	63.158	Mus_caroli
YBL026W	LSM2	100	63.158	ENSMUSG00000007050	Lsm2	100	63.158	Mus_musculus
YBL026W	LSM2	100	63.158	MGP_PahariEiJ_G0020485	Lsm2	100	63.158	Mus_pahari
YBL026W	LSM2	100	63.158	MGP_SPRETEiJ_G0022395	Lsm2	100	63.158	Mus_spretus
YBL026W	LSM2	100	63.158	ENSNGAG00000003997	Lsm2	100	63.158	Nannospalax_galili
YBL026W	LSM2	99	62.500	ENSNBRG00000012904	si:ch73-14h10.2	100	62.500	Neolamprologus_brichardi
YBL026W	LSM2	100	63.158	ENSNLEG00000035542	LSM2	100	63.158	Nomascus_leucogenys
YBL026W	LSM2	75	61.972	ENSMEUG00000003419	LSM2	100	61.972	Notamacropus_eugenii
YBL026W	LSM2	100	63.158	ENSOPRG00000003668	LSM2	100	63.158	Ochotona_princeps
YBL026W	LSM2	100	63.158	ENSODEG00000017583	LSM2	100	63.158	Octodon_degus
YBL026W	LSM2	100	64.211	ENSONIG00000019321	si:ch73-14h10.2	100	64.211	Oreochromis_niloticus
YBL026W	LSM2	99	62.766	ENSOANG00000005398	LSM2	100	62.766	Ornithorhynchus_anatinus
YBL026W	LSM2	100	63.158	ENSOCUG00000002583	LSM2	100	63.158	Oryctolagus_cuniculus
YBL026W	LSM2	100	64.211	ENSORLG00000029858	si:ch73-14h10.2	100	64.211	Oryzias_latipes
YBL026W	LSM2	100	50.806	ENSORLG00015000465	si:ch73-14h10.2	100	50.806	Oryzias_latipes_hsok
YBL026W	LSM2	100	64.211	ENSOMEG00000002892	si:ch73-14h10.2	100	64.211	Oryzias_melastigma
YBL026W	LSM2	99	62.766	ENSOARG00000004575	LSM2	100	62.766	Ovis_aries
YBL026W	LSM2	100	63.158	ENSPPAG00000032431	LSM2	100	63.158	Pan_paniscus
YBL026W	LSM2	79	52.000	ENSPPAG00000043941	-	93	52.000	Pan_paniscus
YBL026W	LSM2	100	63.158	ENSPPRG00000015353	LSM2	100	63.158	Panthera_pardus
YBL026W	LSM2	99	62.766	ENSPTIG00000010303	LSM2	99	62.766	Panthera_tigris_altaica
YBL026W	LSM2	100	63.158	ENSPTRG00000017986	LSM2	100	63.158	Pan_troglodytes
YBL026W	LSM2	100	63.158	ENSPANG00000024577	LSM2	100	63.158	Papio_anubis
YBL026W	LSM2	100	64.211	ENSPKIG00000007028	si:ch73-14h10.2	100	64.211	Paramormyrops_kingsleyae
YBL026W	LSM2	99	62.766	ENSPSIG00000004458	LSM2	78	62.766	Pelodiscus_sinensis
YBL026W	LSM2	99	62.766	ENSPMGG00000018511	si:ch73-14h10.2	100	62.766	Periophthalmus_magnuspinnatus
YBL026W	LSM2	99	63.830	ENSPCIG00000018560	-	95	63.830	Phascolarctos_cinereus
YBL026W	LSM2	100	64.211	ENSPFOG00000001621	si:ch73-14h10.2	100	64.211	Poecilia_formosa
YBL026W	LSM2	100	64.211	ENSPLAG00000017165	si:ch73-14h10.2	100	64.211	Poecilia_latipinna
YBL026W	LSM2	100	64.211	ENSPMEG00000019574	si:ch73-14h10.2	100	64.211	Poecilia_mexicana
YBL026W	LSM2	99	63.830	ENSPREG00000016534	si:ch73-14h10.2	100	63.830	Poecilia_reticulata
YBL026W	LSM2	100	63.158	ENSPPYG00000016461	-	54	63.158	Pongo_abelii
YBL026W	LSM2	100	63.158	ENSPCAG00000013737	LSM2	100	63.158	Procavia_capensis
YBL026W	LSM2	100	63.158	ENSPCOG00000020134	LSM2	100	63.158	Propithecus_coquereli
YBL026W	LSM2	100	63.158	ENSPVAG00000012405	LSM2	100	63.158	Pteropus_vampyrus
YBL026W	LSM2	100	64.211	ENSPNYG00000019298	smx5	100	64.211	Pundamilia_nyererei
YBL026W	LSM2	100	64.211	ENSPNAG00000027769	si:ch73-14h10.2	100	64.211	Pygocentrus_nattereri
YBL026W	LSM2	56	62.264	ENSRNOG00000011065	AC126899.1	76	62.264	Rattus_norvegicus
YBL026W	LSM2	100	63.158	ENSRNOG00000048725	Lsm2	100	63.158	Rattus_norvegicus
YBL026W	LSM2	79	56.000	ENSRBIG00000011356	-	91	56.000	Rhinopithecus_bieti
YBL026W	LSM2	100	63.158	ENSRBIG00000010172	LSM2	100	63.158	Rhinopithecus_bieti
YBL026W	LSM2	79	56.000	ENSRROG00000030708	-	91	56.000	Rhinopithecus_roxellana
YBL026W	LSM2	100	63.158	ENSRROG00000030345	LSM2	100	63.158	Rhinopithecus_roxellana
YBL026W	LSM2	100	63.158	ENSSBOG00000018943	LSM2	100	63.158	Saimiri_boliviensis_boliviensis
YBL026W	LSM2	100	64.211	ENSSFOG00015006734	lsm2	100	64.211	Scleropages_formosus
YBL026W	LSM2	100	63.158	ENSSMAG00000001122	si:ch73-14h10.2	100	63.158	Scophthalmus_maximus
YBL026W	LSM2	100	64.211	ENSSDUG00000021605	smx5	100	64.211	Seriola_dumerili
YBL026W	LSM2	100	64.211	ENSSLDG00000002765	si:ch73-14h10.2	100	64.211	Seriola_lalandi_dorsalis
YBL026W	LSM2	100	64.211	ENSSPUG00000009631	LSM2	100	64.211	Sphenodon_punctatus
YBL026W	LSM2	100	64.211	ENSSPAG00000016904	si:ch73-14h10.2	100	64.211	Stegastes_partitus
YBL026W	LSM2	100	63.158	ENSSSCG00000039021	LSM2	100	63.158	Sus_scrofa
YBL026W	LSM2	99	63.830	ENSTRUG00000002093	si:ch73-14h10.2	100	63.830	Takifugu_rubripes
YBL026W	LSM2	69	66.667	ENSTNIG00000013770	si:ch73-14h10.2	99	66.667	Tetraodon_nigroviridis
YBL026W	LSM2	100	63.158	ENSTTRG00000014131	LSM2	100	63.158	Tursiops_truncatus
YBL026W	LSM2	99	62.766	ENSUMAG00000013425	LSM2	65	62.766	Ursus_maritimus
YBL026W	LSM2	99	62.766	ENSVPAG00000001761	LSM2	100	62.766	Vicugna_pacos
YBL026W	LSM2	80	59.211	ENSVVUG00000016264	-	94	59.211	Vulpes_vulpes
YBL026W	LSM2	100	63.158	ENSXETG00000024077	lsm2	100	63.158	Xenopus_tropicalis
YBL026W	LSM2	99	63.830	ENSXCOG00000006078	si:ch73-14h10.2	100	63.830	Xiphophorus_couchianus
YBL026W	LSM2	99	63.830	ENSXMAG00000028018	si:ch73-14h10.2	100	63.830	Xiphophorus_maculatus