EuRBPDB

Description

Ensembl ID: YCL011C (Gene tree)
Gene ID: -
Gene Symbol: GBP2
Alias: RLF6
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1284
Position: chrIII:102075-103358
Accession: S000000517
RBP type: canonical RBP
Summary: Poly(A+) RNA-binding protein%3B key surveillance factor for the selective export of spliced mRNAs from the nucleus to the cytoplasm%3B preference for intron-containing genes%3B similar to Npl3p%3B also binds single-stranded telomeric repeat sequence in vitro%3B relocalizes to the cytosol in response to hypoxia%3B GBP2 has a paralog%2C HRB1%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YCL011C_mRNA	RRM_1	PF00076.22	5.6e-60	1	3
YCL011C_mRNA	RRM_1	PF00076.22	5.6e-60	2	3
YCL011C_mRNA	RRM_1	PF00076.22	5.6e-60	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YCL011C_mRNA	-	1284	-	YCL011C_mRNA	427 (aa)	-	P25555

Gene Model

Protein-Protein Interaction (PPI)

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YCL011C	GBP2	68	45.714	ENSCING00000003046	-	78	37.333	Ciona_intestinalis
YCL011C	GBP2	68	48.649	ENSCSAVG00000000753	-	91	35.526	Ciona_savignyi