EuRBPDB

Description

Ensembl ID: YCR077C (Gene tree)
Gene ID: -
Gene Symbol: PAT1
Alias: MRT1
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 2391
Position: chrIII:250238-252628
Accession: S000000673
RBP type: canonical RBP
Summary: Deadenylation-dependent mRNA-decapping factor%3B also required for faithful chromosome transmission%2C maintenance of rDNA locus stability%2C and protection of mRNA 3'-UTRs from trimming%3B associated with topoisomerase II%3B binds to mRNAs under glucose starvation%2C most often in the 3' UTR%3B functionally linked to Pab1p%3B forms cytoplasmic foci upon DNA replication stress%3B phosphorylation by PKA inhibits P body foci formation

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YCR077C_mRNA	PAT1	PF09770.9	3.4e-76	1	2
YCR077C_mRNA	PAT1	PF09770.9	3.4e-76	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl.PAR_CL & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	MS & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YCR077C_mRNA	-	2391	-	YCR077C_mRNA	796 (aa)	-	P25644

Gene Model

Protein-Protein Interaction (PPI)