EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YCR093W (Gene tree)
Gene ID: -
Gene Symbol: CDC39
Alias: NOT1|ROS1|SMD6
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 6327
Position: chrIII:280117-286443
Accession: S000000689
RBP type: canonical RBP
Summary: Subunit of the CCR4-NOT1 core complex%3B this complex has multiple roles in the regulation of mRNA levels including regulation of transcription and destabilization of mRNA by deadenylation%3B basal transcription factor that increases initiation and elongation%3B activates the ATPase activity of Dhh1p%2C resulting in processing body disassembly

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YCR093W_mRNA	Not1	PF04054.15	1e-126	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YCR093W_mRNA	-	6327	-	YCR093W_mRNA	2108 (aa)	-	P25655

Gene Model

Click here to download YCR093W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YCR093W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YCR093W	CDC39	68	34.074	ENSG00000125107	CNOT1	84	36.842	Homo_sapiens
YCR093W	CDC39	60	34.074	ENSAPOG00000005042	cnot1	56	34.074	Acanthochromis_polyacanthus
YCR093W	CDC39	68	34.074	ENSAMEG00000017298	CNOT1	57	31.373	Ailuropoda_melanoleuca
YCR093W	CDC39	60	34.074	ENSAPEG00000022342	cnot1	55	34.074	Amphiprion_percula
YCR093W	CDC39	68	34.074	ENSAPLG00000007162	CNOT1	56	30.544	Anas_platyrhynchos
YCR093W	CDC39	51	34.074	ENSACAG00000001602	CNOT1	53	31.373	Anolis_carolinensis
YCR093W	CDC39	68	34.074	ENSANAG00000038198	CNOT1	56	31.373	Aotus_nancymaae
YCR093W	CDC39	61	34.074	ENSACLG00000014234	cnot1	52	39.207	Astatotilapia_calliptera
YCR093W	CDC39	68	34.074	ENSBTAG00000020782	CNOT1	56	31.373	Bos_taurus
YCR093W	CDC39	68	34.074	ENSCJAG00000011318	CNOT1	56	31.373	Callithrix_jacchus
YCR093W	CDC39	68	34.074	ENSCAFG00000008426	CNOT1	56	31.373	Canis_familiaris
YCR093W	CDC39	67	34.074	ENSCAFG00020010156	CNOT1	57	31.373	Canis_lupus_dingo
YCR093W	CDC39	68	34.074	ENSCHIG00000010452	CNOT1	56	31.373	Capra_hircus
YCR093W	CDC39	68	34.074	ENSTSYG00000006888	CNOT1	56	31.373	Carlito_syrichta
YCR093W	CDC39	68	34.074	ENSCPOG00000013026	CNOT1	58	31.373	Cavia_porcellus
YCR093W	CDC39	68	34.074	ENSCCAG00000026333	CNOT1	56	31.373	Cebus_capucinus
YCR093W	CDC39	68	34.074	ENSCATG00000032625	CNOT1	56	32.579	Cercocebus_atys
YCR093W	CDC39	68	34.074	ENSCLAG00000006289	CNOT1	56	31.373	Chinchilla_lanigera
YCR093W	CDC39	68	34.074	ENSCSAG00000004731	CNOT1	56	31.373	Chlorocebus_sabaeus
YCR093W	CDC39	68	34.074	ENSCPBG00000026222	CNOT1	59	30.882	Chrysemys_picta_bellii
YCR093W	CDC39	65	32.861	ENSCSAVG00000002414	-	70	32.547	Ciona_savignyi
YCR093W	CDC39	68	34.074	ENSCANG00000040534	CNOT1	57	31.373	Colobus_angolensis_palliatus
YCR093W	CDC39	68	34.074	ENSCGRG00001016365	Cnot1	56	31.373	Cricetulus_griseus_chok1gshd
YCR093W	CDC39	68	34.074	ENSCGRG00000001714	Cnot1	56	31.373	Cricetulus_griseus_crigri
YCR093W	CDC39	68	34.074	ENSDARG00000004174	cnot1	56	30.480	Danio_rerio
YCR093W	CDC39	68	34.074	ENSDNOG00000013250	CNOT1	56	31.373	Dasypus_novemcinctus
YCR093W	CDC39	57	31.887	FBgn0085436	Not1	59	31.887	Drosophila_melanogaster
YCR093W	CDC39	68	34.074	ENSEASG00005005819	CNOT1	59	30.500	Equus_asinus_asinus
YCR093W	CDC39	68	34.074	ENSECAG00000009889	CNOT1	58	31.373	Equus_caballus
YCR093W	CDC39	68	34.074	ENSFCAG00000025155	CNOT1	58	31.373	Felis_catus
YCR093W	CDC39	68	34.074	ENSFALG00000007285	CNOT1	56	30.335	Ficedula_albicollis
YCR093W	CDC39	68	34.074	ENSFDAG00000013399	CNOT1	56	31.373	Fukomys_damarensis
YCR093W	CDC39	68	34.074	ENSGALG00000002301	CNOT1	56	30.544	Gallus_gallus
YCR093W	CDC39	68	34.074	ENSGAGG00000022646	CNOT1	57	30.882	Gopherus_agassizii
YCR093W	CDC39	68	34.074	ENSGGOG00000009547	CNOT1	56	31.373	Gorilla_gorilla
YCR093W	CDC39	68	34.074	ENSHGLG00000014322	CNOT1	56	31.373	Heterocephalus_glaber_female
YCR093W	CDC39	61	33.333	ENSHCOG00000006501	cnot1	56	31.188	Hippocampus_comes
YCR093W	CDC39	68	34.074	ENSSTOG00000005490	CNOT1	56	31.373	Ictidomys_tridecemlineatus
YCR093W	CDC39	68	34.074	ENSJJAG00000000633	Cnot1	56	31.373	Jaculus_jaculus
YCR093W	CDC39	61	34.074	ENSKMAG00000006149	cnot1	56	30.846	Kryptolebias_marmoratus
YCR093W	CDC39	68	34.074	ENSLACG00000010869	CNOT1	57	31.373	Latimeria_chalumnae
YCR093W	CDC39	68	33.333	ENSLOCG00000006324	cnot1	57	30.480	Lepisosteus_oculatus
YCR093W	CDC39	68	34.074	ENSLAFG00000000098	CNOT1	56	31.863	Loxodonta_africana
YCR093W	CDC39	68	34.074	ENSMFAG00000035888	CNOT1	57	31.373	Macaca_fascicularis
YCR093W	CDC39	68	34.074	ENSMMUG00000014625	CNOT1	92	32.624	Macaca_mulatta
YCR093W	CDC39	68	34.074	ENSMNEG00000031820	CNOT1	63	31.373	Macaca_nemestrina
YCR093W	CDC39	68	34.074	ENSMLEG00000040933	CNOT1	56	31.373	Mandrillus_leucophaeus
YCR093W	CDC39	60	34.074	ENSMZEG00005016210	cnot1	57	34.074	Maylandia_zebra
YCR093W	CDC39	68	34.074	ENSMGAG00000001908	CNOT1	57	30.544	Meleagris_gallopavo
YCR093W	CDC39	68	34.074	ENSMICG00000007071	CNOT1	57	31.373	Microcebus_murinus
YCR093W	CDC39	68	34.074	ENSMOCG00000017969	Cnot1	56	31.373	Microtus_ochrogaster
YCR093W	CDC39	68	34.815	ENSMODG00000014199	CNOT1	56	30.882	Monodelphis_domestica
YCR093W	CDC39	60	34.074	ENSMALG00000008645	cnot1	55	34.074	Monopterus_albus
YCR093W	CDC39	61	38.397	MGP_CAROLIEiJ_G0031430	Cnot1	52	30.271	Mus_caroli
YCR093W	CDC39	68	34.074	ENSMUSG00000036550	Cnot1	57	31.373	Mus_musculus
YCR093W	CDC39	68	34.074	MGP_PahariEiJ_G0023028	Cnot1	56	31.373	Mus_pahari
YCR093W	CDC39	68	34.074	MGP_SPRETEiJ_G0032549	Cnot1	56	31.373	Mus_spretus
YCR093W	CDC39	68	34.074	ENSMPUG00000004830	CNOT1	56	31.373	Mustela_putorius_furo
YCR093W	CDC39	68	34.074	ENSMLUG00000003728	CNOT1	56	31.373	Myotis_lucifugus
YCR093W	CDC39	68	34.074	ENSNGAG00000018628	Cnot1	56	31.373	Nannospalax_galili
YCR093W	CDC39	54	41.818	ENSNBRG00000019358	cnot1	50	34.074	Neolamprologus_brichardi
YCR093W	CDC39	68	34.074	ENSNLEG00000003566	CNOT1	56	31.373	Nomascus_leucogenys
YCR093W	CDC39	68	34.074	ENSODEG00000016337	CNOT1	56	31.373	Octodon_degus
YCR093W	CDC39	68	34.074	ENSOCUG00000006911	CNOT1	56	31.373	Oryctolagus_cuniculus
YCR093W	CDC39	58	34.074	ENSOMEG00000015124	cnot1	55	30.846	Oryzias_melastigma
YCR093W	CDC39	68	34.074	ENSOGAG00000000543	CNOT1	56	31.373	Otolemur_garnettii
YCR093W	CDC39	68	34.074	ENSOARG00000001567	CNOT1	56	31.373	Ovis_aries
YCR093W	CDC39	68	34.074	ENSPPAG00000022013	CNOT1	57	31.373	Pan_paniscus
YCR093W	CDC39	68	34.074	ENSPPRG00000004867	CNOT1	56	31.373	Panthera_pardus
YCR093W	CDC39	68	34.074	ENSPTIG00000012589	CNOT1	56	31.373	Panthera_tigris_altaica
YCR093W	CDC39	68	34.074	ENSPTRG00000008183	CNOT1	57	31.373	Pan_troglodytes
YCR093W	CDC39	64	34.074	ENSPANG00000020901	CNOT1	60	31.373	Papio_anubis
YCR093W	CDC39	68	34.074	ENSPKIG00000023538	CNOT1	58	30.753	Paramormyrops_kingsleyae
YCR093W	CDC39	62	34.074	ENSPKIG00000002914	CNOT1	56	34.074	Paramormyrops_kingsleyae
YCR093W	CDC39	68	34.074	ENSPSIG00000005499	CNOT1	56	30.882	Pelodiscus_sinensis
YCR093W	CDC39	65	38.559	ENSPCIG00000007343	CNOT1	56	30.882	Phascolarctos_cinereus
YCR093W	CDC39	57	30.502	ENSPLAG00000014018	cnot1	55	30.309	Poecilia_latipinna
YCR093W	CDC39	57	30.502	ENSPMEG00000005868	cnot1	56	30.309	Poecilia_mexicana
YCR093W	CDC39	57	30.502	ENSPREG00000018793	cnot1	55	30.309	Poecilia_reticulata
YCR093W	CDC39	68	34.074	ENSPPYG00000007410	CNOT1	56	31.373	Pongo_abelii
YCR093W	CDC39	68	34.074	ENSPCOG00000027139	CNOT1	57	31.373	Propithecus_coquereli
YCR093W	CDC39	65	34.074	ENSPVAG00000004243	CNOT1	54	33.750	Pteropus_vampyrus
YCR093W	CDC39	68	34.074	ENSRNOG00000012271	Cnot1	56	31.373	Rattus_norvegicus
YCR093W	CDC39	68	34.074	ENSRBIG00000044598	CNOT1	57	31.373	Rhinopithecus_bieti
YCR093W	CDC39	68	34.074	ENSRROG00000000906	CNOT1	56	31.373	Rhinopithecus_roxellana
YCR093W	CDC39	68	34.074	ENSSBOG00000029155	CNOT1	58	31.373	Saimiri_boliviensis_boliviensis
YCR093W	CDC39	68	34.815	ENSSHAG00000012187	CNOT1	56	30.882	Sarcophilus_harrisii
YCR093W	CDC39	61	34.074	ENSSMAG00000013844	cnot1	53	38.767	Scophthalmus_maximus
YCR093W	CDC39	60	34.074	ENSSDUG00000021491	cnot1	56	34.074	Seriola_dumerili
YCR093W	CDC39	61	34.074	ENSSLDG00000014816	cnot1	51	39.207	Seriola_lalandi_dorsalis
YCR093W	CDC39	60	34.074	ENSSPAG00000018802	cnot1	55	34.074	Stegastes_partitus
YCR093W	CDC39	68	34.074	ENSSSCG00000002799	CNOT1	63	31.373	Sus_scrofa
YCR093W	CDC39	68	34.074	ENSTGUG00000005919	CNOT1	56	30.392	Taeniopygia_guttata
YCR093W	CDC39	68	31.111	ENSTTRG00000008460	CNOT1	56	31.373	Tursiops_truncatus
YCR093W	CDC39	68	34.074	ENSUAMG00000009251	CNOT1	56	31.373	Ursus_americanus
YCR093W	CDC39	68	34.074	ENSUMAG00000021291	CNOT1	56	31.373	Ursus_maritimus
YCR093W	CDC39	67	34.074	ENSVVUG00000024037	CNOT1	57	31.373	Vulpes_vulpes