EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YDL031W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Putative ATP-dependent RNA helicase of the DEAD-box protein family%3B constituent of 66S pre-ribosomal particles%3B essential protein involved in ribosome biogenesis
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 2988 bases
Position: chrIV:394217-397204
Accession: S000002189
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDL031W_mRNA	DBP10CT	PF08147.12	3.6e-19	1	1
YDL031W_mRNA	DEAD	PF00270.29	7.6e-50	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
21124907	A screen for RNA binding proteins in yeast indicates dual functions for many enzymes	ProtoArray & yeast	2010 Nov 11	DOI: 10.1371/journal.pone.0015499

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDL031W_mRNA	-	2988	-	YDL031W_mRNA	995 (aa)	-	Q12389

Gene Model

Click here to download YDL031W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YDL031W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDL031W	-	82	35.876	ENSG00000123064	DDX54	97	61.386	Homo_sapiens
YDL031W	-	81	35.870	ENSAPOG00000008602	ddx54	83	36.585	Acanthochromis_polyacanthus
YDL031W	-	92	35.225	ENSAMEG00000008775	DDX54	87	35.932	Ailuropoda_melanoleuca
YDL031W	-	77	35.769	ENSACIG00000019104	ddx54	89	34.895	Amphilophus_citrinellus
YDL031W	-	77	37.165	ENSAOCG00000008449	ddx54	81	37.165	Amphiprion_ocellaris
YDL031W	-	77	37.165	ENSAPEG00000014287	ddx54	81	37.165	Amphiprion_percula
YDL031W	-	77	36.457	ENSATEG00000018529	ddx54	90	35.233	Anabas_testudineus
YDL031W	-	79	37.201	ENSAPLG00000013191	DDX54	87	36.855	Anas_platyrhynchos
YDL031W	-	81	36.054	ENSACAG00000004703	DDX54	82	37.117	Anolis_carolinensis
YDL031W	-	82	30.299	ENSANAG00000032761	-	80	30.934	Aotus_nancymaae
YDL031W	-	74	34.524	ENSANAG00000032241	-	84	34.543	Aotus_nancymaae
YDL031W	-	77	37.132	ENSACLG00000013176	ddx54	89	35.906	Astatotilapia_calliptera
YDL031W	-	77	38.247	ENSAMXG00000009189	ddx54	81	37.611	Astyanax_mexicanus
YDL031W	-	83	36.811	ENSBTAG00000011930	DDX54	75	37.755	Bos_taurus
YDL031W	-	77	37.674	WBGene00022378	Y94H6A.5	85	37.500	Caenorhabditis_elegans
YDL031W	-	82	36.735	ENSCJAG00000010039	DDX54	76	37.834	Callithrix_jacchus
YDL031W	-	82	36.912	ENSCAFG00020017643	DDX54	81	37.547	Canis_lupus_dingo
YDL031W	-	82	36.462	ENSCHIG00000026798	DDX54	80	37.659	Capra_hircus
YDL031W	-	95	32.602	ENSTSYG00000007898	DDX54	88	33.962	Carlito_syrichta
YDL031W	-	78	36.632	ENSCAPG00000001482	DDX54	84	37.216	Cavia_aperea
YDL031W	-	82	35.981	ENSCPOG00000020649	DDX54	80	37.084	Cavia_porcellus
YDL031W	-	82	35.714	ENSCCAG00000022625	DDX54	80	37.548	Cebus_capucinus
YDL031W	-	65	40.216	ENSCATG00000041943	DDX54	80	37.325	Cercocebus_atys
YDL031W	-	83	35.706	ENSCLAG00000010748	DDX54	80	36.761	Chinchilla_lanigera
YDL031W	-	83	35.934	ENSCSAG00000002432	DDX54	78	37.342	Chlorocebus_sabaeus
YDL031W	-	62	35.930	ENSCPBG00000017982	DDX54	71	34.865	Chrysemys_picta_bellii
YDL031W	-	77	37.896	ENSCING00000004789	-	86	37.657	Ciona_intestinalis
YDL031W	-	79	46.452	ENSCSAVG00000008916	-	100	48.549	Ciona_savignyi
YDL031W	-	69	58.929	ENSCANG00000020637	DDX54	84	58.929	Colobus_angolensis_palliatus
YDL031W	-	81	36.797	ENSCGRG00001014803	Ddx54	87	36.023	Cricetulus_griseus_chok1gshd
YDL031W	-	81	36.996	ENSCGRG00000002827	Ddx54	87	36.095	Cricetulus_griseus_crigri
YDL031W	-	78	35.533	ENSCSEG00000016462	ddx54	81	35.354	Cynoglossus_semilaevis
YDL031W	-	77	37.468	ENSCVAG00000022404	ddx54	81	37.468	Cyprinodon_variegatus
YDL031W	-	78	37.687	ENSDARG00000105286	ddx54	91	35.785	Danio_rerio
YDL031W	-	82	37.064	ENSDNOG00000032913	DDX54	80	37.563	Dasypus_novemcinctus
YDL031W	-	63	34.633	ENSDORG00000003399	Ddx54	85	32.857	Dipodomys_ordii
YDL031W	-	74	36.129	FBgn0052344	CG32344	83	36.329	Drosophila_melanogaster
YDL031W	-	50	58.898	ENSEBUG00000008886	ddx54	69	43.262	Eptatretus_burgeri
YDL031W	-	72	35.946	ENSEASG00005009501	DDX54	95	33.839	Equus_asinus_asinus
YDL031W	-	82	36.848	ENSECAG00000012890	DDX54	81	37.267	Equus_caballus
YDL031W	-	85	36.229	ENSELUG00000013533	ddx54	90	36.374	Esox_lucius
YDL031W	-	82	36.650	ENSFCAG00000027806	DDX54	79	37.873	Felis_catus
YDL031W	-	87	36.199	ENSFALG00000007737	DDX54	99	36.086	Ficedula_albicollis
YDL031W	-	72	44.668	ENSFDAG00000019953	DDX54	76	47.204	Fukomys_damarensis
YDL031W	-	88	34.955	ENSFHEG00000018425	ddx54	89	34.768	Fundulus_heteroclitus
YDL031W	-	77	36.317	ENSGMOG00000011746	ddx54	84	36.842	Gadus_morhua
YDL031W	-	91	35.543	ENSGALG00000007490	DDX54	91	36.494	Gallus_gallus
YDL031W	-	77	37.147	ENSGAFG00000010336	ddx54	80	36.761	Gambusia_affinis
YDL031W	-	75	36.422	ENSGACG00000016793	ddx54	86	35.314	Gasterosteus_aculeatus
YDL031W	-	80	37.778	ENSGAGG00000022803	DDX54	86	38.432	Gopherus_agassizii
YDL031W	-	82	35.995	ENSGGOG00000010414	DDX54	80	37.769	Gorilla_gorilla
YDL031W	-	83	35.357	ENSHGLG00000014411	DDX54	87	35.068	Heterocephalus_glaber_female
YDL031W	-	83	35.595	ENSHGLG00100018511	DDX54	87	35.294	Heterocephalus_glaber_male
YDL031W	-	82	36.514	ENSHCOG00000019287	ddx54	89	36.439	Hippocampus_comes
YDL031W	-	66	58.506	ENSIPUG00000015556	Ddx54	79	58.025	Ictalurus_punctatus
YDL031W	-	73	37.032	ENSSTOG00000004068	DDX54	95	35.280	Ictidomys_tridecemlineatus
YDL031W	-	82	36.715	ENSJJAG00000015712	Ddx54	80	37.980	Jaculus_jaculus
YDL031W	-	77	36.446	ENSKMAG00000017520	ddx54	89	34.016	Kryptolebias_marmoratus
YDL031W	-	75	36.601	ENSLBEG00000019480	ddx54	89	35.129	Labrus_bergylta
YDL031W	-	81	36.650	ENSLACG00000008944	DDX54	79	37.310	Latimeria_chalumnae
YDL031W	-	84	35.047	ENSLOCG00000008485	ddx54	89	36.706	Lepisosteus_oculatus
YDL031W	-	85	32.232	ENSLAFG00000027782	DDX54	95	32.569	Loxodonta_africana
YDL031W	-	65	40.216	ENSMFAG00000043636	DDX54	80	37.484	Macaca_fascicularis
YDL031W	-	65	40.062	ENSMMUG00000021795	DDX54	80	37.357	Macaca_mulatta
YDL031W	-	65	37.134	ENSMNEG00000043605	DDX54	80	34.689	Macaca_nemestrina
YDL031W	-	82	33.935	ENSMLEG00000038981	DDX54	79	34.777	Mandrillus_leucophaeus
YDL031W	-	77	36.595	ENSMAMG00000012784	ddx54	81	36.514	Mastacembelus_armatus
YDL031W	-	77	36.903	ENSMZEG00005018773	ddx54	81	36.258	Maylandia_zebra
YDL031W	-	79	37.157	ENSMGAG00000009183	DDX54	86	37.157	Meleagris_gallopavo
YDL031W	-	81	35.916	ENSMAUG00000011051	Ddx54	87	35.495	Mesocricetus_auratus
YDL031W	-	82	35.732	ENSMICG00000012217	DDX54	80	36.876	Microcebus_murinus
YDL031W	-	92	35.326	ENSMOCG00000010835	Ddx54	87	36.374	Microtus_ochrogaster
YDL031W	-	81	35.913	ENSMMOG00000009634	ddx54	87	36.077	Mola_mola
YDL031W	-	80	37.157	ENSMODG00000003413	DDX54	91	35.635	Monodelphis_domestica
YDL031W	-	77	37.741	ENSMALG00000022098	ddx54	81	37.404	Monopterus_albus
YDL031W	-	81	36.508	MGP_CAROLIEiJ_G0027665	Ddx54	87	36.621	Mus_caroli
YDL031W	-	81	36.810	ENSMUSG00000029599	Ddx54	87	36.519	Mus_musculus
YDL031W	-	82	36.276	MGP_PahariEiJ_G0024247	Ddx54	87	36.508	Mus_pahari
YDL031W	-	81	36.765	MGP_SPRETEiJ_G0028665	Ddx54	87	36.058	Mus_spretus
YDL031W	-	82	36.659	ENSMPUG00000002574	DDX54	87	36.199	Mustela_putorius_furo
YDL031W	-	88	36.168	ENSNGAG00000021313	Ddx54	87	36.054	Nannospalax_galili
YDL031W	-	82	36.024	ENSNLEG00000000162	DDX54	80	37.277	Nomascus_leucogenys
YDL031W	-	74	37.913	ENSMEUG00000015392	DDX54	96	37.827	Notamacropus_eugenii
YDL031W	-	83	34.615	ENSODEG00000014863	DDX54	87	33.973	Octodon_degus
YDL031W	-	92	33.155	ENSOCUG00000008932	DDX54	85	33.935	Oryctolagus_cuniculus
YDL031W	-	79	36.933	ENSORLG00000007385	ddx54	91	35.236	Oryzias_latipes
YDL031W	-	79	36.740	ENSORLG00020000858	ddx54	91	35.076	Oryzias_latipes_hni
YDL031W	-	79	37.178	ENSORLG00015006956	ddx54	91	35.456	Oryzias_latipes_hsok
YDL031W	-	79	36.308	ENSOMEG00000003663	ddx54	92	34.863	Oryzias_melastigma
YDL031W	-	82	36.462	ENSOGAG00000004210	DDX54	80	37.468	Otolemur_garnettii
YDL031W	-	82	36.342	ENSOARG00000008363	DDX54	80	37.931	Ovis_aries
YDL031W	-	82	35.867	ENSPPAG00000042178	DDX54	80	37.848	Pan_paniscus
YDL031W	-	82	36.165	ENSPPRG00000005223	DDX54	79	37.113	Panthera_pardus
YDL031W	-	82	35.995	ENSPTRG00000005483	DDX54	80	37.769	Pan_troglodytes
YDL031W	-	65	40.216	ENSPANG00000008883	DDX54	80	37.484	Papio_anubis
YDL031W	-	77	36.352	ENSPKIG00000018272	ddx54	80	35.975	Paramormyrops_kingsleyae
YDL031W	-	52	44.061	ENSPSIG00000005055	DDX54	92	43.870	Pelodiscus_sinensis
YDL031W	-	81	35.337	ENSPMGG00000010988	ddx54	91	34.541	Periophthalmus_magnuspinnatus
YDL031W	-	82	36.265	ENSPEMG00000016701	Ddx54	87	36.014	Peromyscus_maniculatus_bairdii
YDL031W	-	77	36.748	ENSPFOG00000019822	ddx54	89	35.028	Poecilia_formosa
YDL031W	-	77	36.620	ENSPLAG00000004530	ddx54	89	34.915	Poecilia_latipinna
YDL031W	-	77	36.748	ENSPMEG00000010803	ddx54	89	35.028	Poecilia_mexicana
YDL031W	-	77	36.504	ENSPREG00000014372	ddx54	89	34.763	Poecilia_reticulata
YDL031W	-	82	36.615	ENSPPYG00000004984	DDX54	80	37.516	Pongo_abelii
YDL031W	-	72	50.694	ENSPCAG00000008462	DDX54	82	56.904	Procavia_capensis
YDL031W	-	82	36.397	ENSPCOG00000006050	DDX54	80	37.484	Propithecus_coquereli
YDL031W	-	54	51.301	ENSPVAG00000017347	DDX54	53	57.727	Pteropus_vampyrus
YDL031W	-	77	38.284	ENSPNAG00000014459	ddx54	88	38.284	Pygocentrus_nattereri
YDL031W	-	92	35.453	ENSRNOG00000001377	Ddx54	83	36.333	Rattus_norvegicus
YDL031W	-	82	36.168	ENSRBIG00000032535	DDX54	80	37.405	Rhinopithecus_bieti
YDL031W	-	82	34.334	ENSRROG00000029557	DDX54	79	35.578	Rhinopithecus_roxellana
YDL031W	-	77	36.855	ENSSBOG00000028194	DDX54	80	37.564	Saimiri_boliviensis_boliviensis
YDL031W	-	81	36.978	ENSSHAG00000015646	DDX54	93	35.588	Sarcophilus_harrisii
YDL031W	-	87	35.941	ENSSFOG00015014981	ddx54	89	35.819	Scleropages_formosus
YDL031W	-	75	36.566	ENSSMAG00000003210	ddx54	85	36.601	Scophthalmus_maximus
YDL031W	-	77	36.632	ENSSDUG00000004474	ddx54	91	34.448	Seriola_dumerili
YDL031W	-	77	36.504	ENSSLDG00000010380	ddx54	91	34.628	Seriola_lalandi_dorsalis
YDL031W	-	77	38.034	ENSSPUG00000014141	DDX54	80	38.581	Sphenodon_punctatus
YDL031W	-	77	34.487	ENSSPAG00000022918	ddx54	82	34.359	Stegastes_partitus
YDL031W	-	82	36.134	ENSSSCG00000009876	DDX54	83	37.340	Sus_scrofa
YDL031W	-	88	34.286	ENSTGUG00000009126	DDX54	99	33.952	Taeniopygia_guttata
YDL031W	-	77	36.957	ENSTRUG00000014939	ddx54	81	37.245	Takifugu_rubripes
YDL031W	-	77	36.398	ENSTNIG00000009037	ddx54	90	34.758	Tetraodon_nigroviridis
YDL031W	-	82	34.135	ENSTTRG00000016678	DDX54	80	35.287	Tursiops_truncatus
YDL031W	-	82	36.342	ENSUAMG00000028387	DDX54	88	36.943	Ursus_americanus
YDL031W	-	82	36.912	ENSVVUG00000010212	DDX54	80	37.949	Vulpes_vulpes
YDL031W	-	77	38.015	ENSXETG00000016410	ddx54	81	38.015	Xenopus_tropicalis
YDL031W	-	81	36.054	ENSXCOG00000002909	ddx54	89	34.382	Xiphophorus_couchianus
YDL031W	-	78	36.295	ENSXMAG00000005312	ddx54	89	34.490	Xiphophorus_maculatus