EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YDL060W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 2367
Position: chrIV:341619-343985
Accession: S000002218
RBP type: canonical RBP
Summary: Protein required for processing of 20S pre-rRNA in the cytoplasm%3B associates with pre-40S ribosomal particles%3B inhibits the premature association of 60S subunits with assembling 40S subunits in the cytoplasm%3B similar to Bms1p%3B relocalizes from nucleus to cytoplasm upon DNA replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDL060W_mRNA	AARP2CN	PF08142.12	1.2e-22	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDL060W_mRNA	-	2367	-	YDL060W_mRNA	788 (aa)	-	Q07381

Gene Model

Click here to download YDL060W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YDL060W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDL060W	-	99	30.549	ENSG00000167721	TSR1	96	30.580	Homo_sapiens
YDL060W	-	98	30.386	ENSACIG00000007090	tsr1	96	30.893	Amphilophus_citrinellus
YDL060W	-	99	30.281	ENSANAG00000031071	TSR1	96	30.750	Aotus_nancymaae
YDL060W	-	98	30.597	ENSBTAG00000004225	TSR1	96	31.266	Bos_taurus
YDL060W	-	99	30.110	ENSCJAG00000012456	TSR1	96	30.873	Callithrix_jacchus
YDL060W	-	80	32.278	ENSCAFG00000019273	-	95	32.061	Canis_familiaris
YDL060W	-	98	30.911	ENSCAFG00000002106	-	96	30.721	Canis_familiaris
YDL060W	-	98	30.996	ENSCAFG00020009728	TSR1	96	30.807	Canis_lupus_dingo
YDL060W	-	98	30.941	ENSCHIG00000023935	TSR1	96	31.481	Capra_hircus
YDL060W	-	99	30.198	ENSCATG00000044262	TSR1	96	30.713	Cercocebus_atys
YDL060W	-	98	30.703	ENSCLAG00000005567	TSR1	96	30.429	Chinchilla_lanigera
YDL060W	-	99	30.446	ENSCSAG00000013788	TSR1	96	30.958	Chlorocebus_sabaeus
YDL060W	-	98	30.607	ENSCPBG00000020363	TSR1	94	30.769	Chrysemys_picta_bellii
YDL060W	-	96	30.934	ENSCGRG00001023942	Tsr1	96	30.949	Cricetulus_griseus_chok1gshd
YDL060W	-	98	30.889	ENSCVAG00000000506	tsr1	97	31.212	Cyprinodon_variegatus
YDL060W	-	98	30.435	ENSDNOG00000004715	TSR1	96	30.212	Dasypus_novemcinctus
YDL060W	-	98	30.635	ENSDORG00000016371	-	96	31.219	Dipodomys_ordii
YDL060W	-	87	37.282	ENSETEG00000017534	TSR1	85	37.282	Echinops_telfairi
YDL060W	-	98	30.025	ENSECAG00000009114	TSR1	96	30.446	Equus_caballus
YDL060W	-	98	30.348	ENSFCAG00000006313	TSR1	96	30.375	Felis_catus
YDL060W	-	98	30.615	ENSFDAG00000006038	TSR1	96	30.683	Fukomys_damarensis
YDL060W	-	98	30.110	ENSGACG00000010843	tsr1	96	30.461	Gasterosteus_aculeatus
YDL060W	-	98	30.050	ENSGAGG00000025619	-	96	30.135	Gopherus_agassizii
YDL060W	-	99	30.262	ENSGGOG00000001704	TSR1	96	30.617	Gorilla_gorilla
YDL060W	-	98	31.304	ENSHGLG00000012806	-	96	31.081	Heterocephalus_glaber_female
YDL060W	-	98	31.304	ENSHGLG00100015392	TSR1	96	31.081	Heterocephalus_glaber_male
YDL060W	-	98	30.895	ENSHCOG00000001432	tsr1	95	31.078	Hippocampus_comes
YDL060W	-	98	30.483	ENSSTOG00000011819	TSR1	96	31.103	Ictidomys_tridecemlineatus
YDL060W	-	75	34.036	ENSJJAG00000019505	Tsr1	78	34.036	Jaculus_jaculus
YDL060W	-	98	31.098	ENSLACG00000002197	TSR1	96	31.912	Latimeria_chalumnae
YDL060W	-	99	30.322	ENSMFAG00000021330	TSR1	96	30.835	Macaca_fascicularis
YDL060W	-	99	30.224	ENSMMUG00000017519	TSR1	96	30.788	Macaca_mulatta
YDL060W	-	99	30.198	ENSMNEG00000031382	TSR1	96	30.713	Macaca_nemestrina
YDL060W	-	99	30.198	ENSMLEG00000036733	TSR1	96	30.713	Mandrillus_leucophaeus
YDL060W	-	98	30.370	ENSMICG00000012943	TSR1	96	30.370	Microcebus_murinus
YDL060W	-	98	31.382	ENSMOCG00000022764	Tsr1	96	31.351	Microtus_ochrogaster
YDL060W	-	99	30.061	ENSMMOG00000014280	tsr1	97	30.049	Mola_mola
YDL060W	-	98	31.273	ENSMODG00000010658	TSR1	96	31.436	Monodelphis_domestica
YDL060W	-	98	31.073	MGP_CAROLIEiJ_G0016727	Tsr1	96	31.196	Mus_caroli
YDL060W	-	98	30.703	ENSMUSG00000038335	Tsr1	96	30.826	Mus_musculus
YDL060W	-	98	31.520	MGP_PahariEiJ_G0017864	Tsr1	96	31.488	Mus_pahari
YDL060W	-	98	31.073	MGP_SPRETEiJ_G0017570	Tsr1	96	31.196	Mus_spretus
YDL060W	-	80	31.818	ENSMPUG00000013000	TSR1	95	31.595	Mustela_putorius_furo
YDL060W	-	98	30.693	ENSMLUG00000003505	TSR1	96	31.047	Myotis_lucifugus
YDL060W	-	98	30.769	ENSOCUG00000014256	TSR1	96	30.798	Oryctolagus_cuniculus
YDL060W	-	98	30.281	ENSORLG00000004926	tsr1	95	31.495	Oryzias_latipes
YDL060W	-	98	30.440	ENSORLG00020008792	tsr1	95	31.242	Oryzias_latipes_hni
YDL060W	-	99	30.556	ENSOGAG00000004492	TSR1	98	30.797	Otolemur_garnettii
YDL060W	-	98	30.902	ENSOARG00000015437	TSR1	94	30.675	Ovis_aries
YDL060W	-	99	30.549	ENSPPAG00000036355	TSR1	96	30.580	Pan_paniscus
YDL060W	-	98	30.050	ENSPTIG00000010608	TSR1	96	30.250	Panthera_tigris_altaica
YDL060W	-	99	30.549	ENSPTRG00000008547	TSR1	96	30.580	Pan_troglodytes
YDL060W	-	99	30.062	ENSPANG00000024463	TSR1	96	30.161	Papio_anubis
YDL060W	-	99	30.635	ENSPKIG00000013972	tsr1	97	31.303	Paramormyrops_kingsleyae
YDL060W	-	82	31.278	ENSPSIG00000018258	TSR1	92	32.296	Pelodiscus_sinensis
YDL060W	-	98	32.178	ENSPEMG00000018033	Tsr1	96	32.550	Peromyscus_maniculatus_bairdii
YDL060W	-	99	31.013	ENSPCIG00000009357	TSR1	96	31.515	Phascolarctos_cinereus
YDL060W	-	98	30.270	ENSPFOG00000004483	TSR1	96	30.750	Poecilia_formosa
YDL060W	-	98	30.326	ENSPLAG00000022320	tsr1	95	31.328	Poecilia_latipinna
YDL060W	-	98	30.024	ENSPMEG00000004577	tsr1	95	30.012	Poecilia_mexicana
YDL060W	-	97	30.419	ENSPREG00000010354	tsr1	93	30.535	Poecilia_reticulata
YDL060W	-	98	30.477	ENSPCOG00000017928	TSR1	96	30.532	Propithecus_coquereli
YDL060W	-	98	30.538	ENSPVAG00000002162	TSR1	96	30.370	Pteropus_vampyrus
YDL060W	-	98	30.569	ENSRNOG00000002980	Tsr1	96	30.779	Rattus_norvegicus
YDL060W	-	99	30.198	ENSRBIG00000040016	TSR1	96	30.713	Rhinopithecus_bieti
YDL060W	-	99	30.494	ENSRROG00000030361	TSR1	96	30.713	Rhinopithecus_roxellana
YDL060W	-	99	30.262	ENSSBOG00000020785	TSR1	96	30.750	Saimiri_boliviensis_boliviensis
YDL060W	-	98	31.722	ENSSHAG00000011394	TSR1	96	31.970	Sarcophilus_harrisii
YDL060W	-	99	30.685	ENSSFOG00015005455	tsr1	97	31.681	Scleropages_formosus
YDL060W	-	79	47.143	ENSSARG00000000759	TSR1	78	47.143	Sorex_araneus
YDL060W	-	99	30.741	ENSSPUG00000007042	TSR1	96	31.656	Sphenodon_punctatus
YDL060W	-	98	30.730	ENSTNIG00000016196	tsr1	96	30.653	Tetraodon_nigroviridis
YDL060W	-	98	30.665	ENSVVUG00000021767	TSR1	96	30.112	Vulpes_vulpes