EuRBPDB

Description

Ensembl ID: YDL061C (Gene tree)
Gene ID: -
Gene Symbol: RPS29B
Alias: -
Full Name: Protein component of the small (40S) ribosomal subunit%3B homologous to mammalian ribosomal protein S29 and bacterial S14%3B RPS29B has a paralog%2C RPS29A%2C that arose from the whole genome duplication
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 171 bases
Position: chrIV:340628-340798
Accession: S000002219
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDL061C_mRNA	Ribosomal_S14	PF00253.21	1.4e-15	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDL061C_mRNA	-	171	-	YDL061C_mRNA	56 (aa)	-	P41058

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YDL061C	RPS29B	100	91.071	YLR388W	RPS29A	100	91.071

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDL061C	RPS29B	96	66.667	WBGene00004498	rps-29	96	66.667	Caenorhabditis_elegans
YDL061C	RPS29B	96	62.963	ENSCING00000010675	-	96	62.963	Ciona_intestinalis
YDL061C	RPS29B	96	66.667	FBgn0261599	RpS29	96	66.667	Drosophila_melanogaster