EuRBPDB

Description

Ensembl ID: YDL084W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1341
Position: chrIV:305237-306577
Accession: S000002242
RBP type: canonical RBP
Summary: Component of the TREX complex required for nuclear mRNA export%3B member of the DEAD-box RNA helicase superfamily and is involved in early and late steps of spliceosome assembly%3B homolog of the human splicing factor hUAP56%3B relocalizes from nucleus to cytoplasm upon DNA replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDL084W_mRNA	ResIII	PF04851.15	2.3e-08	1	1
YDL084W_mRNA	DEAD	PF00270.29	1.7e-35	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl.PAR_CL & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDL084W_mRNA	-	1341	-	YDL084W_mRNA	446 (aa)	-	Q07478

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YDL084W	-	85	31.593	YHR065C	-	74	31.593
YDL084W	-	79	30.278	YNL112W	-	64	30.194
YDL084W	-	84	35.638	YDR021W	-	93	35.638
YDL084W	-	75	31.287	YGL078C	-	64	31.287
YDL084W	-	86	35.509	YKR059W	TIF1	94	35.509
YDL084W	-	83	31.332	YHR169W	-	87	31.332
YDL084W	-	86	35.509	YJL138C	TIF2	94	35.509
YDL084W	-	85	38.058	YDL160C	-	74	38.058
YDL084W	-	66	36.620	YLR276C	-	54	36.620
YDL084W	-	79	32.884	YPL119C	DBP1	59	32.884
YDL084W	-	84	31.105	YMR290C	-	75	31.105
YDL084W	-	77	32.687	YOR204W	DED1	59	33.241