EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YDL137W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 546
Position: chrIV:216529-217074
Accession: S000002296
RBP type: canonical RBP
Summary: ADP-ribosylation factor%3B GTPase of the Ras superfamily involved in regulation of coated formation vesicles in intracellular trafficking within the Golgi%3B ARF2 has a paralog%2C ARF1%2C that arose from the whole genome duplication%3B arf1 arf2 double null mutation is complemented by human ARF1%2C ARF4%2C ARF5%2C or ARF6

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDL137W_mRNA	MMR_HSR1	PF01926.23	7.3e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDL137W_mRNA	-	546	-	YDL137W_mRNA	181 (aa)	-	P19146

Gene Model

Click here to download YDL137W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YDL137W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YDL137W	-	100	96.133	YDL192W	-	100	96.133
YDL137W	-	88	34.731	YPL218W	-	88	34.731
YDL137W	-	92	36.723	YPL051W	-	88	36.723
YDL137W	-	67	33.071	YMR138W	CIN4	66	33.071

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDL137W	-	99	77.654	ENSACIG00000012192	-	99	77.654	Amphilophus_citrinellus
YDL137W	-	83	77.483	ENSAOCG00000001275	-	88	77.483	Amphiprion_ocellaris
YDL137W	-	99	77.095	ENSAPEG00000016909	-	99	77.095	Amphiprion_percula
YDL137W	-	99	77.095	ENSATEG00000003174	-	99	77.095	Anabas_testudineus
YDL137W	-	99	76.536	ENSACLG00000004123	-	99	76.536	Astatotilapia_calliptera
YDL137W	-	96	77.966	ENSAMXG00000019845	arf1	98	77.966	Astyanax_mexicanus
YDL137W	-	99	75.978	ENSCVAG00000013374	-	99	75.978	Cyprinodon_variegatus
YDL137W	-	96	77.966	ENSDARG00000009484	arf1	98	77.966	Danio_rerio
YDL137W	-	99	77.222	ENSELUG00000022533	arf1	79	77.222	Esox_lucius
YDL137W	-	99	75.978	ENSFHEG00000005859	-	99	75.978	Fundulus_heteroclitus
YDL137W	-	96	75.287	ENSGMOG00000000429	arf1	95	75.287	Gadus_morhua
YDL137W	-	99	75.978	ENSGAFG00000018151	-	99	75.978	Gambusia_affinis
YDL137W	-	99	73.184	ENSGACG00000014195	-	96	73.184	Gasterosteus_aculeatus
YDL137W	-	99	76.536	ENSHBUG00000002636	-	99	76.536	Haplochromis_burtoni
YDL137W	-	96	76.836	ENSIPUG00000006311	arf1	98	76.836	Ictalurus_punctatus
YDL137W	-	99	78.212	ENSKMAG00000018315	-	99	78.212	Kryptolebias_marmoratus
YDL137W	-	96	75.287	ENSLBEG00000001998	arf1	98	75.287	Labrus_bergylta
YDL137W	-	99	75.978	ENSLBEG00000023263	-	99	75.978	Labrus_bergylta
YDL137W	-	99	77.095	ENSMAMG00000001553	-	99	77.095	Mastacembelus_armatus
YDL137W	-	99	76.536	ENSMZEG00005022594	-	99	76.536	Maylandia_zebra
YDL137W	-	99	77.654	ENSMALG00000004269	-	99	77.654	Monopterus_albus
YDL137W	-	99	76.536	ENSNBRG00000016455	-	99	76.536	Neolamprologus_brichardi
YDL137W	-	99	76.536	ENSONIG00000001286	-	99	76.536	Oreochromis_niloticus
YDL137W	-	99	77.654	ENSORLG00000023270	-	99	77.654	Oryzias_latipes
YDL137W	-	99	77.654	ENSORLG00020006712	-	99	77.654	Oryzias_latipes_hni
YDL137W	-	99	77.654	ENSORLG00015019836	-	99	77.654	Oryzias_latipes_hsok
YDL137W	-	99	77.654	ENSOMEG00000023784	-	99	77.654	Oryzias_melastigma
YDL137W	-	99	77.095	ENSPMGG00000014174	arf1	98	79.290	Periophthalmus_magnuspinnatus
YDL137W	-	96	78.035	ENSPMAG00000002035	arf1	96	78.035	Petromyzon_marinus
YDL137W	-	99	75.978	ENSPFOG00000014787	-	99	75.978	Poecilia_formosa
YDL137W	-	99	75.978	ENSPLAG00000001041	-	99	75.978	Poecilia_latipinna
YDL137W	-	99	75.978	ENSPMEG00000024077	-	99	75.978	Poecilia_mexicana
YDL137W	-	99	75.978	ENSPREG00000009009	-	99	75.978	Poecilia_reticulata
YDL137W	-	99	76.536	ENSPNYG00000009472	-	99	76.536	Pundamilia_nyererei
YDL137W	-	93	80.357	ENSPNAG00000000098	arf1	93	80.357	Pygocentrus_nattereri
YDL137W	-	99	75.978	ENSSMAG00000006125	-	99	75.978	Scophthalmus_maximus
YDL137W	-	99	77.095	ENSSDUG00000017356	-	99	77.095	Seriola_dumerili
YDL137W	-	99	77.095	ENSSLDG00000008504	-	99	77.095	Seriola_lalandi_dorsalis
YDL137W	-	99	77.095	ENSSPAG00000011431	-	99	77.095	Stegastes_partitus
YDL137W	-	99	78.212	ENSTRUG00000019870	-	99	78.212	Takifugu_rubripes
YDL137W	-	99	77.654	ENSTNIG00000011685	-	99	77.654	Tetraodon_nigroviridis
YDL137W	-	99	75.978	ENSXCOG00000016687	-	97	75.978	Xiphophorus_couchianus
YDL137W	-	99	75.978	ENSXMAG00000009193	-	99	75.978	Xiphophorus_maculatus