EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YDL140C (Gene tree)
Gene ID: -
Gene Symbol: RPO21
Alias: RPB1|RPB220|SUA8
Full Name: RNA polymerase II largest subunit B220%3B part of central core%3B phosphorylation of C-terminal heptapeptide repeat domain regulates association with transcription and splicing factors%3B similar to bacterial beta-prime
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 5202 bases
Position: chrIV:205360-210561
Accession: S000002299
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDL140C_mRNA	RNA_pol_Rpb1_5	PF04998.17	1.8e-107	1	1
YDL140C_mRNA	RNA_pol_Rpb1_R	PF05001.13	1.9e-20	1	12
YDL140C_mRNA	RNA_pol_Rpb1_R	PF05001.13	1.9e-20	2	12
YDL140C_mRNA	RNA_pol_Rpb1_R	PF05001.13	1.9e-20	3	12
YDL140C_mRNA	RNA_pol_Rpb1_R	PF05001.13	1.9e-20	4	12
YDL140C_mRNA	RNA_pol_Rpb1_R	PF05001.13	1.9e-20	5	12
YDL140C_mRNA	RNA_pol_Rpb1_R	PF05001.13	1.9e-20	6	12
YDL140C_mRNA	RNA_pol_Rpb1_R	PF05001.13	1.9e-20	7	12
YDL140C_mRNA	RNA_pol_Rpb1_R	PF05001.13	1.9e-20	8	12
YDL140C_mRNA	RNA_pol_Rpb1_R	PF05001.13	1.9e-20	9	12
YDL140C_mRNA	RNA_pol_Rpb1_R	PF05001.13	1.9e-20	10	12
YDL140C_mRNA	RNA_pol_Rpb1_R	PF05001.13	1.9e-20	11	12
YDL140C_mRNA	RNA_pol_Rpb1_R	PF05001.13	1.9e-20	12	12
YDL140C_mRNA	RNA_pol_Rpb1_4	PF05000.17	1e-35	1	1
YDL140C_mRNA	RNA_pol_Rpb1_2	PF00623.20	1.9e-78	1	1
YDL140C_mRNA	RNA_pol_Rpb1_3	PF04983.18	1.2e-47	1	1
YDL140C_mRNA	RNA_pol_Rpb1_1	PF04997.12	8.5e-115	1	1
YDL140C_mRNA	RNA_pol_Rpb1_7	PF04990.12	5.5e-47	1	1
YDL140C_mRNA	RNA_pol_Rpb1_6	PF04992.14	1.1e-63	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDL140C_mRNA	-	5202	-	YDL140C_mRNA	1733 (aa)	-	P04050

Gene Model

Click here to download YDL140C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YDL140C's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YDL140C	RPO21	83	33.485	YOR116C	RPO31	98	33.794
YDL140C	RPO21	53	53.521	YOR341W	RPA190	67	45.455

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDL140C	RPO21	92	50.730	ENSAPOG00000006552	polr2a	83	49.848	Acanthochromis_polyacanthus
YDL140C	RPO21	99	80.180	ENSAMEG00000016265	-	83	88.000	Ailuropoda_melanoleuca
YDL140C	RPO21	99	83.544	ENSACIG00000015982	polr2a	84	50.522	Amphilophus_citrinellus
YDL140C	RPO21	99	80.769	ENSAOCG00000004255	polr2a	86	50.809	Amphiprion_ocellaris
YDL140C	RPO21	99	83.544	ENSAPEG00000012623	polr2a	84	50.400	Amphiprion_percula
YDL140C	RPO21	99	83.544	ENSATEG00000019644	polr2a	84	50.277	Anabas_testudineus
YDL140C	RPO21	99	80.180	ENSACAG00000014561	POLR2A	82	88.000	Anolis_carolinensis
YDL140C	RPO21	99	80.180	ENSANAG00000020093	-	84	88.000	Aotus_nancymaae
YDL140C	RPO21	99	83.544	ENSACLG00000006735	polr2a	82	50.940	Astatotilapia_calliptera
YDL140C	RPO21	99	83.544	ENSAMXG00000020046	polr2a	84	50.215	Astyanax_mexicanus
YDL140C	RPO21	99	80.180	ENSBTAG00000046765	POLR2A	83	88.000	Bos_taurus
YDL140C	RPO21	99	68.786	WBGene00000123	ama-1	86	49.442	Caenorhabditis_elegans
YDL140C	RPO21	99	79.279	ENSCAFG00000016532	POLR2A	90	49.969	Canis_familiaris
YDL140C	RPO21	99	80.180	ENSCAFG00020007929	-	84	88.000	Canis_lupus_dingo
YDL140C	RPO21	99	80.180	ENSCHIG00000027173	-	83	88.000	Capra_hircus
YDL140C	RPO21	99	80.180	ENSTSYG00000012803	-	84	88.000	Carlito_syrichta
YDL140C	RPO21	98	80.180	ENSCAPG00000001882	-	87	51.013	Cavia_aperea
YDL140C	RPO21	99	80.180	ENSCPOG00000014812	-	88	51.619	Cavia_porcellus
YDL140C	RPO21	99	80.180	ENSCCAG00000020938	-	84	88.000	Cebus_capucinus
YDL140C	RPO21	99	80.180	ENSCATG00000013680	-	84	88.000	Cercocebus_atys
YDL140C	RPO21	99	80.180	ENSCLAG00000012196	-	85	88.000	Chinchilla_lanigera
YDL140C	RPO21	99	80.180	ENSCSAG00000011644	-	83	88.000	Chlorocebus_sabaeus
YDL140C	RPO21	99	77.333	ENSCPBG00000012697	POLR2A	83	88.000	Chrysemys_picta_bellii
YDL140C	RPO21	99	71.250	ENSCING00000007884	-	88	50.277	Ciona_intestinalis
YDL140C	RPO21	99	64.130	ENSCSAVG00000008334	-	92	88.000	Ciona_savignyi
YDL140C	RPO21	99	80.180	ENSCANG00000010622	-	85	88.000	Colobus_angolensis_palliatus
YDL140C	RPO21	99	80.180	ENSCGRG00001003538	Polr2a	83	88.000	Cricetulus_griseus_chok1gshd
YDL140C	RPO21	92	50.183	ENSCGRG00000012105	Polr2a	87	88.000	Cricetulus_griseus_crigri
YDL140C	RPO21	99	83.544	ENSCSEG00000002635	polr2a	84	50.646	Cynoglossus_semilaevis
YDL140C	RPO21	99	83.544	ENSCVAG00000005156	polr2a	83	49.726	Cyprinodon_variegatus
YDL140C	RPO21	99	83.544	ENSDARG00000099966	polr2a	81	50.466	Danio_rerio
YDL140C	RPO21	99	80.180	ENSDNOG00000016482	-	83	88.000	Dasypus_novemcinctus
YDL140C	RPO21	99	80.180	ENSDORG00000008667	Polr2a	84	88.000	Dipodomys_ordii
YDL140C	RPO21	99	47.034	FBgn0003277	RpII215	85	49.785	Drosophila_melanogaster
YDL140C	RPO21	92	65.493	ENSETEG00000002540	-	78	47.623	Echinops_telfairi
YDL140C	RPO21	99	71.304	ENSEBUG00000013967	polr2a	81	50.591	Eptatretus_burgeri
YDL140C	RPO21	99	74.468	ENSEASG00005019114	-	85	88.000	Equus_asinus_asinus
YDL140C	RPO21	99	80.180	ENSECAG00000018485	POLR2A	82	88.000	Equus_caballus
YDL140C	RPO21	92	86.275	ENSEEUG00000001154	-	91	80.000	Erinaceus_europaeus
YDL140C	RPO21	99	52.800	ENSELUG00000014284	polr2a	84	49.751	Esox_lucius
YDL140C	RPO21	99	80.180	ENSFDAG00000008287	-	84	88.000	Fukomys_damarensis
YDL140C	RPO21	98	76.712	ENSFHEG00000001768	polr2a	85	49.787	Fundulus_heteroclitus
YDL140C	RPO21	99	48.996	ENSGMOG00000007725	polr2a	94	49.843	Gadus_morhua
YDL140C	RPO21	99	80.702	ENSGAFG00000005389	polr2a	89	50.784	Gambusia_affinis
YDL140C	RPO21	99	49.381	ENSGACG00000019366	polr2a	94	49.718	Gasterosteus_aculeatus
YDL140C	RPO21	99	80.180	ENSGGOG00000014800	-	84	88.000	Gorilla_gorilla
YDL140C	RPO21	97	81.690	ENSHBUG00000018937	polr2a	84	80.769	Haplochromis_burtoni
YDL140C	RPO21	99	80.180	ENSHGLG00000012381	POLR2A	84	88.000	Heterocephalus_glaber_female
YDL140C	RPO21	99	80.180	ENSHGLG00100014843	POLR2A	84	88.000	Heterocephalus_glaber_male
YDL140C	RPO21	99	83.544	ENSHCOG00000011874	polr2a	82	49.695	Hippocampus_comes
YDL140C	RPO21	99	83.544	ENSIPUG00000002613	Polr2a	84	49.908	Ictalurus_punctatus
YDL140C	RPO21	99	80.180	ENSSTOG00000001304	-	84	88.000	Ictidomys_tridecemlineatus
YDL140C	RPO21	99	80.180	ENSJJAG00000013049	Polr2a	84	88.000	Jaculus_jaculus
YDL140C	RPO21	93	46.748	ENSKMAG00000016343	polr2a	84	47.676	Kryptolebias_marmoratus
YDL140C	RPO21	99	83.544	ENSLBEG00000027652	polr2a	84	50.338	Labrus_bergylta
YDL140C	RPO21	98	83.544	ENSLACG00000012071	POLR2A	82	88.000	Latimeria_chalumnae
YDL140C	RPO21	99	83.544	ENSLOCG00000013863	polr2a	86	49.969	Lepisosteus_oculatus
YDL140C	RPO21	99	80.180	ENSLAFG00000008626	-	82	88.000	Loxodonta_africana
YDL140C	RPO21	55	53.141	ENSMFAG00000007042	-	98	53.141	Macaca_fascicularis
YDL140C	RPO21	99	80.180	ENSMMUG00000023620	-	84	88.000	Macaca_mulatta
YDL140C	RPO21	99	80.180	ENSMNEG00000040407	-	83	88.000	Macaca_nemestrina
YDL140C	RPO21	98	80.180	ENSMLEG00000030263	-	82	88.000	Mandrillus_leucophaeus
YDL140C	RPO21	99	83.544	ENSMAMG00000003351	polr2a	82	50.214	Mastacembelus_armatus
YDL140C	RPO21	99	83.544	ENSMZEG00005021429	polr2a	82	50.376	Maylandia_zebra
YDL140C	RPO21	56	53.340	ENSMAUG00000021055	-	99	53.340	Mesocricetus_auratus
YDL140C	RPO21	99	80.180	ENSMICG00000013372	-	84	88.000	Microcebus_murinus
YDL140C	RPO21	99	80.180	ENSMOCG00000018279	Polr2a	80	50.094	Microtus_ochrogaster
YDL140C	RPO21	98	50.547	ENSMMOG00000012515	polr2a	82	50.031	Mola_mola
YDL140C	RPO21	99	80.180	ENSMODG00000007009	-	82	88.000	Monodelphis_domestica
YDL140C	RPO21	97	77.273	ENSMALG00000008716	polr2a	86	50.753	Monopterus_albus
YDL140C	RPO21	99	79.279	MGP_CAROLIEiJ_G0016587	Polr2a	84	88.000	Mus_caroli
YDL140C	RPO21	99	79.279	ENSMUSG00000005198	Polr2a	84	88.000	Mus_musculus
YDL140C	RPO21	99	80.180	MGP_PahariEiJ_G0017718	Polr2a	83	88.000	Mus_pahari
YDL140C	RPO21	99	79.279	MGP_SPRETEiJ_G0017423	Polr2a	84	88.000	Mus_spretus
YDL140C	RPO21	99	80.180	ENSMPUG00000009648	-	83	88.000	Mustela_putorius_furo
YDL140C	RPO21	99	80.180	ENSMLUG00000009088	-	83	88.000	Myotis_lucifugus
YDL140C	RPO21	99	80.180	ENSNGAG00000002543	Polr2a	84	88.000	Nannospalax_galili
YDL140C	RPO21	99	83.544	ENSNBRG00000002005	polr2a	82	50.815	Neolamprologus_brichardi
YDL140C	RPO21	99	80.180	ENSNLEG00000009460	-	84	88.000	Nomascus_leucogenys
YDL140C	RPO21	87	62.727	ENSMEUG00000008611	-	80	62.727	Notamacropus_eugenii
YDL140C	RPO21	91	49.815	ENSOPRG00000015116	-	98	50.721	Ochotona_princeps
YDL140C	RPO21	95	80.180	ENSODEG00000017674	-	86	88.000	Octodon_degus
YDL140C	RPO21	99	83.544	ENSONIG00000009231	polr2a	82	50.276	Oreochromis_niloticus
YDL140C	RPO21	50	55.072	ENSOANG00000003303	-	94	55.072	Ornithorhynchus_anatinus
YDL140C	RPO21	99	80.180	ENSOCUG00000017929	-	92	50.093	Oryctolagus_cuniculus
YDL140C	RPO21	99	83.544	ENSORLG00000006431	polr2a	84	50.338	Oryzias_latipes
YDL140C	RPO21	99	83.544	ENSORLG00020010235	polr2a	84	50.338	Oryzias_latipes_hni
YDL140C	RPO21	99	83.544	ENSORLG00015007075	polr2a	84	50.215	Oryzias_latipes_hsok
YDL140C	RPO21	99	50.550	ENSOMEG00000010713	polr2a	99	50.914	Oryzias_melastigma
YDL140C	RPO21	99	80.180	ENSOGAG00000033608	-	83	88.000	Otolemur_garnettii
YDL140C	RPO21	98	82.781	ENSOARG00000013874	-	87	88.000	Ovis_aries
YDL140C	RPO21	99	80.180	ENSPPAG00000043734	-	85	88.000	Pan_paniscus
YDL140C	RPO21	99	80.180	ENSPTRG00000008691	POLR2A	84	88.000	Pan_troglodytes
YDL140C	RPO21	99	80.180	ENSPANG00000024099	-	84	88.000	Papio_anubis
YDL140C	RPO21	89	51.804	ENSPKIG00000005727	polr2a	83	90.625	Paramormyrops_kingsleyae
YDL140C	RPO21	99	49.970	ENSPSIG00000014006	POLR2A	99	84.000	Pelodiscus_sinensis
YDL140C	RPO21	99	55.046	ENSPMGG00000019734	polr2a	89	66.667	Periophthalmus_magnuspinnatus
YDL140C	RPO21	99	80.180	ENSPEMG00000012521	Polr2a	84	88.000	Peromyscus_maniculatus_bairdii
YDL140C	RPO21	92	49.668	ENSPCIG00000028851	-	81	50.403	Phascolarctos_cinereus
YDL140C	RPO21	98	81.081	ENSPFOG00000007890	polr2a	84	49.815	Poecilia_formosa
YDL140C	RPO21	98	82.090	ENSPLAG00000007399	polr2a	86	80.769	Poecilia_latipinna
YDL140C	RPO21	98	82.090	ENSPMEG00000002071	polr2a	86	80.769	Poecilia_mexicana
YDL140C	RPO21	99	83.544	ENSPREG00000013122	polr2a	82	50.877	Poecilia_reticulata
YDL140C	RPO21	99	80.180	ENSPPYG00000007924	-	84	88.000	Pongo_abelii
YDL140C	RPO21	89	80.180	ENSPCAG00000006951	-	73	88.000	Procavia_capensis
YDL140C	RPO21	99	80.180	ENSPCOG00000025260	-	84	88.000	Propithecus_coquereli
YDL140C	RPO21	99	80.180	ENSPVAG00000005069	-	83	88.000	Pteropus_vampyrus
YDL140C	RPO21	99	83.544	ENSPNYG00000022340	polr2a	85	49.594	Pundamilia_nyererei
YDL140C	RPO21	99	83.544	ENSPNAG00000011237	polr2a	82	49.574	Pygocentrus_nattereri
YDL140C	RPO21	99	80.180	ENSRNOG00000028834	Polr2a	83	88.000	Rattus_norvegicus
YDL140C	RPO21	99	80.180	ENSRBIG00000002471	-	84	50.464	Rhinopithecus_bieti
YDL140C	RPO21	99	80.180	ENSRROG00000029583	-	84	88.000	Rhinopithecus_roxellana
YDL140C	RPO21	99	80.180	ENSSBOG00000000808	-	84	88.000	Saimiri_boliviensis_boliviensis
YDL140C	RPO21	99	83.544	ENSSHAG00000002858	-	83	50.341	Sarcophilus_harrisii
YDL140C	RPO21	99	83.544	ENSSFOG00015023275	polr2a	84	50.215	Scleropages_formosus
YDL140C	RPO21	99	83.544	ENSSMAG00000009137	polr2a	83	50.521	Scophthalmus_maximus
YDL140C	RPO21	99	83.544	ENSSDUG00000020466	polr2a	84	50.522	Seriola_dumerili
YDL140C	RPO21	99	83.544	ENSSLDG00000020613	polr2a	84	50.522	Seriola_lalandi_dorsalis
YDL140C	RPO21	98	49.127	ENSSARG00000005875	-	97	84.000	Sorex_araneus
YDL140C	RPO21	99	80.769	ENSSPAG00000016741	polr2a	83	50.092	Stegastes_partitus
YDL140C	RPO21	99	80.180	ENSSSCG00000028278	-	83	88.000	Sus_scrofa
YDL140C	RPO21	99	48.230	ENSTRUG00000012320	polr2a	80	48.377	Takifugu_rubripes
YDL140C	RPO21	99	50.152	ENSTNIG00000010136	polr2a	92	49.876	Tetraodon_nigroviridis
YDL140C	RPO21	69	80.000	ENSTBEG00000013294	-	51	54.593	Tupaia_belangeri
YDL140C	RPO21	99	80.180	ENSTTRG00000014273	-	83	88.000	Tursiops_truncatus
YDL140C	RPO21	99	76.190	ENSUAMG00000014866	-	88	50.061	Ursus_americanus
YDL140C	RPO21	90	82.911	ENSUMAG00000015732	-	81	88.000	Ursus_maritimus
YDL140C	RPO21	56	68.317	ENSVPAG00000008842	-	56	51.163	Vicugna_pacos
YDL140C	RPO21	99	80.180	ENSVVUG00000027878	-	83	49.969	Vulpes_vulpes
YDL140C	RPO21	98	82.584	ENSXETG00000012465	polr2a	81	49.781	Xenopus_tropicalis
YDL140C	RPO21	91	50.959	ENSXCOG00000001804	polr2a	90	50.494	Xiphophorus_couchianus
YDL140C	RPO21	99	83.544	ENSXMAG00000015687	polr2a	82	50.877	Xiphophorus_maculatus