EuRBPDB

Description

Ensembl ID: YDL160C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1521
Position: chrIV:170410-171930
Accession: S000002319
RBP type: canonical RBP
Summary: Cytoplasmic DEAD-box helicase%2C stimulates mRNA decapping%3B coordinates distinct steps in mRNA function and decay%2C interacting with both decapping and deadenylase complexes%3B role in translational repression%2C mRNA decay%2C and possibly mRNA export%3B interacts and cooperates with Ngr1p to promote specific mRNA decay%3B ATP- and RNA-bound form promotes processing body (PB) assembly%2C while ATPase stimulation by Not1p promotes PB disassembly%3B forms cytoplasmic foci on replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDL160C_mRNA	DEAD	PF00270.29	2.9e-45	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	MS & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDL160C_mRNA	-	1521	-	YDL160C_mRNA	506 (aa)	-	P39517

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YDL160C	-	74	38.058	YDL084W	-	85	38.058
YDL160C	-	72	43.478	YKR059W	TIF1	93	43.478
YDL160C	-	65	31.831	YFL002C	-	59	31.831
YDL160C	-	72	40.431	YDR021W	-	93	40.431
YDL160C	-	65	34.706	YMR290C	-	67	34.706
YDL160C	-	75	31.579	YHR065C	-	75	31.579
YDL160C	-	69	31.436	YOR204W	DED1	61	31.635
YDL160C	-	67	31.006	YPL119C	DBP1	58	31.006
YDL160C	-	73	30.049	YDR243C	-	67	30.049
YDL160C	-	67	32.000	YNL112W	-	64	31.909
YDL160C	-	72	43.478	YJL138C	TIF2	93	43.478
YDL160C	-	65	34.024	YGL078C	-	64	34.024
YDL160C	-	72	35.248	YOR046C	DBP5	78	35.248

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDL160C	-	80	67.990	WBGene00000479	cgh-1	94	67.990	Caenorhabditis_elegans
YDL160C	-	79	69.077	ENSCING00000007421	-	92	69.077	Ciona_intestinalis
YDL160C	-	82	68.039	FBgn0004419	me31B	95	68.642	Drosophila_melanogaster