EuRBPDB

Description

Ensembl ID: YDL175C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1035
Position: chrIV:144484-145518
Accession: S000002334
RBP type: canonical RBP
Summary: RNA-binding subunit of the TRAMP nuclear RNA surveillance complex%3B involved in nuclear RNA processing and degradation%3B involved in TRAMP complex assembly as a bridge between Mtr4p and Trf4p%3B stimulates the poly(A) polymerase activity of Pap2p in vitro%3B has 5 zinc knuckle motifs%3B AIR2 has a paralog%2C AIR1%2C that arose from the whole genome duplication%3B Air2p and Air1p have nonredundant roles in regulation of substrate specificity of the exosome

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDL175C_mRNA	zf-CCHC	PF00098.23	1.1e-11	1	3
YDL175C_mRNA	zf-CCHC	PF00098.23	1.1e-11	2	3
YDL175C_mRNA	zf-CCHC	PF00098.23	1.1e-11	3	3

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDL175C_mRNA	-	1035	-	YDL175C_mRNA	344 (aa)	-	Q12476

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YDL175C	-	87	49.530	YIL079C	-	86	49.530