EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YDL192W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 546
Position: chrIV:116321-116866
Accession: S000002351
RBP type: canonical RBP
Summary: ADP-ribosylation factor%3B GTPase of the Ras superfamily involved in regulation of coated vesicle formation in intracellular trafficking within the Golgi%3B ARF1 has a paralog%2C ARF2%2C that arose from the whole genome duplication%3B arf1 arf2 double null mutation is complemented by human ARF1%2C ARF4%2C ARF5%2C or ARF6

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDL192W_mRNA	MMR_HSR1	PF01926.23	5.2e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDL192W_mRNA	-	546	-	YDL192W_mRNA	181 (aa)	-	P11076

Gene Model

Click here to download YDL192W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YDL192W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YDL192W	-	75	32.624	YMR138W	CIN4	73	32.624
YDL192W	-	92	37.288	YPL051W	-	88	37.288
YDL192W	-	62	30.508	YGL210W	-	53	30.508
YDL192W	-	100	96.133	YDL137W	-	100	96.133
YDL192W	-	98	34.239	YPL218W	-	97	34.239

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDL192W	-	99	78.333	ENSACIG00000012192	-	99	78.333	Amphilophus_citrinellus
YDL192W	-	83	78.146	ENSAOCG00000001275	-	88	78.146	Amphiprion_ocellaris
YDL192W	-	99	77.778	ENSAPEG00000016909	-	99	77.778	Amphiprion_percula
YDL192W	-	99	77.778	ENSATEG00000003174	-	99	77.778	Anabas_testudineus
YDL192W	-	99	77.222	ENSACLG00000004123	-	99	77.222	Astatotilapia_calliptera
YDL192W	-	96	78.409	ENSAMXG00000019845	arf1	98	78.409	Astyanax_mexicanus
YDL192W	-	99	76.667	ENSCVAG00000013374	-	99	76.667	Cyprinodon_variegatus
YDL192W	-	99	77.222	ENSDARG00000009484	arf1	99	77.222	Danio_rerio
YDL192W	-	98	79.213	ENSELUG00000022533	arf1	77	79.213	Esox_lucius
YDL192W	-	99	76.667	ENSFHEG00000005859	-	99	76.667	Fundulus_heteroclitus
YDL192W	-	96	76.437	ENSGMOG00000000429	arf1	95	76.437	Gadus_morhua
YDL192W	-	99	76.667	ENSGAFG00000018151	-	99	76.667	Gambusia_affinis
YDL192W	-	99	74.860	ENSGACG00000014195	-	96	74.860	Gasterosteus_aculeatus
YDL192W	-	99	77.222	ENSHBUG00000002636	-	99	77.222	Haplochromis_burtoni
YDL192W	-	95	78.286	ENSIPUG00000006311	arf1	97	78.286	Ictalurus_punctatus
YDL192W	-	99	78.889	ENSKMAG00000018315	-	99	78.889	Kryptolebias_marmoratus
YDL192W	-	99	74.860	ENSLBEG00000001998	arf1	99	74.860	Labrus_bergylta
YDL192W	-	99	76.536	ENSLBEG00000023263	-	99	76.536	Labrus_bergylta
YDL192W	-	99	77.778	ENSMAMG00000001553	-	99	77.778	Mastacembelus_armatus
YDL192W	-	99	77.222	ENSMZEG00005022594	-	99	77.222	Maylandia_zebra
YDL192W	-	99	78.333	ENSMALG00000004269	-	99	78.333	Monopterus_albus
YDL192W	-	99	77.222	ENSNBRG00000016455	-	99	77.222	Neolamprologus_brichardi
YDL192W	-	99	77.222	ENSONIG00000001286	-	99	77.222	Oreochromis_niloticus
YDL192W	-	99	78.333	ENSORLG00000023270	-	99	78.333	Oryzias_latipes
YDL192W	-	99	78.333	ENSORLG00020006712	-	99	78.333	Oryzias_latipes_hni
YDL192W	-	99	78.333	ENSORLG00015019836	-	99	78.333	Oryzias_latipes_hsok
YDL192W	-	99	78.771	ENSOMEG00000023784	-	99	78.333	Oryzias_melastigma
YDL192W	-	99	77.778	ENSPMGG00000014174	arf1	98	80.000	Periophthalmus_magnuspinnatus
YDL192W	-	95	79.070	ENSPMAG00000002035	arf1	96	79.070	Petromyzon_marinus
YDL192W	-	99	76.667	ENSPFOG00000014787	-	99	76.667	Poecilia_formosa
YDL192W	-	99	76.667	ENSPLAG00000001041	-	99	76.667	Poecilia_latipinna
YDL192W	-	99	76.667	ENSPMEG00000024077	-	99	76.667	Poecilia_mexicana
YDL192W	-	99	76.667	ENSPREG00000009009	-	99	76.667	Poecilia_reticulata
YDL192W	-	99	77.222	ENSPNYG00000009472	-	99	77.222	Pundamilia_nyererei
YDL192W	-	93	80.357	ENSPNAG00000000098	arf1	93	80.357	Pygocentrus_nattereri
YDL192W	-	99	75.556	ENSSMAG00000006125	-	99	75.556	Scophthalmus_maximus
YDL192W	-	99	77.222	ENSSDUG00000017356	-	99	77.222	Seriola_dumerili
YDL192W	-	99	77.222	ENSSLDG00000008504	-	99	77.222	Seriola_lalandi_dorsalis
YDL192W	-	99	77.778	ENSSPAG00000011431	-	99	77.778	Stegastes_partitus
YDL192W	-	99	79.330	ENSTRUG00000019870	-	99	79.330	Takifugu_rubripes
YDL192W	-	99	78.212	ENSTNIG00000011685	-	99	78.212	Tetraodon_nigroviridis
YDL192W	-	99	76.667	ENSXCOG00000016687	-	98	76.667	Xiphophorus_couchianus
YDL192W	-	99	76.667	ENSXMAG00000009193	-	99	76.667	Xiphophorus_maculatus