EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YDR021W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Nucleolar protein required for maturation of 18S rRNA%3B member of the eIF4A subfamily of DEAD-box ATP-dependent RNA helicases%3B 18S rRNA biogenesis defect of the null mutant is functionally complemented by human EIF4A3
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1200 bases
Position: chrIV:486804-488003
Accession: S000002428
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDR021W_mRNA	ResIII	PF04851.15	1.5e-05	1	1
YDR021W_mRNA	DEAD	PF00270.29	2.3e-44	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDR021W_mRNA	-	1200	-	YDR021W_mRNA	399 (aa)	-	Q12099

Gene Model

Click here to download YDR021W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YDR021W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YDR021W	-	87	32.312	YGL171W	-	63	32.312
YDR021W	-	94	37.047	YOR046C	DBP5	79	37.047
YDR021W	-	93	40.431	YDL160C	-	72	40.431
YDR021W	-	83	35.000	YGL078C	-	64	35.000
YDR021W	-	89	31.034	YHR169W	-	85	31.034
YDR021W	-	92	33.924	YOR204W	DED1	64	33.838
YDR021W	-	91	31.880	YHR065C	-	72	31.880
YDR021W	-	93	35.638	YDL084W	-	84	35.638
YDR021W	-	92	32.124	YNL112W	-	70	32.124
YDR021W	-	88	31.316	YFL002C	-	62	31.316
YDR021W	-	87	34.511	YPL119C	DBP1	59	34.511
YDR021W	-	95	56.728	YJL138C	TIF2	95	56.728
YDR021W	-	92	30.653	YDR194C	-	59	30.653
YDR021W	-	95	56.728	YKR059W	TIF1	95	56.728
YDR021W	-	93	33.251	YDR243C	-	68	33.251

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDR021W	-	99	61.772	ENSG00000141543	EIF4A3	95	61.772	Homo_sapiens
YDR021W	-	99	61.772	ENSAPOG00000017112	eif4a3	97	61.772	Acanthochromis_polyacanthus
YDR021W	-	98	61.637	ENSAMEG00000015194	EIF4A3	96	61.637	Ailuropoda_melanoleuca
YDR021W	-	99	61.772	ENSACIG00000009719	eif4a3	97	61.772	Amphilophus_citrinellus
YDR021W	-	99	61.772	ENSAOCG00000021655	eif4a3	97	61.772	Amphiprion_ocellaris
YDR021W	-	99	61.772	ENSAPEG00000018658	eif4a3	97	61.772	Amphiprion_percula
YDR021W	-	99	61.772	ENSATEG00000014793	eif4a3	97	61.772	Anabas_testudineus
YDR021W	-	88	62.500	ENSAPLG00000014717	EIF4A3	99	62.500	Anas_platyrhynchos
YDR021W	-	98	61.893	ENSACAG00000014384	EIF4A3	90	61.893	Anolis_carolinensis
YDR021W	-	99	61.772	ENSANAG00000005557	EIF4A3	95	61.772	Aotus_nancymaae
YDR021W	-	99	61.519	ENSACLG00000004174	eif4a3	97	61.519	Astatotilapia_calliptera
YDR021W	-	99	61.772	ENSAMXG00000020882	eif4a3	97	61.772	Astyanax_mexicanus
YDR021W	-	99	61.772	ENSBTAG00000016023	EIF4A3	95	61.772	Bos_taurus
YDR021W	-	97	61.598	WBGene00018007	F33D11.10	96	61.598	Caenorhabditis_elegans
YDR021W	-	97	61.598	WBGene00022029	Y65B4A.6	99	61.922	Caenorhabditis_elegans
YDR021W	-	99	61.772	ENSCJAG00000048589	-	95	61.772	Callithrix_jacchus
YDR021W	-	99	58.734	ENSCJAG00000016777	-	95	58.734	Callithrix_jacchus
YDR021W	-	99	61.772	ENSCAFG00000005614	EIF4A3	95	61.772	Canis_familiaris
YDR021W	-	99	61.772	ENSCAFG00020008253	EIF4A3	95	61.772	Canis_lupus_dingo
YDR021W	-	99	61.772	ENSCHIG00000024284	EIF4A3	95	61.772	Capra_hircus
YDR021W	-	99	61.772	ENSTSYG00000008738	EIF4A3	95	61.772	Carlito_syrichta
YDR021W	-	89	60.224	ENSCAPG00000000964	EIF4A3	91	60.224	Cavia_aperea
YDR021W	-	99	61.772	ENSCPOG00000006485	EIF4A3	95	61.772	Cavia_porcellus
YDR021W	-	99	61.772	ENSCCAG00000036144	EIF4A3	95	61.772	Cebus_capucinus
YDR021W	-	99	57.468	ENSCATG00000039629	-	95	57.468	Cercocebus_atys
YDR021W	-	99	61.772	ENSCATG00000039262	-	95	61.772	Cercocebus_atys
YDR021W	-	99	61.772	ENSCLAG00000014502	EIF4A3	95	61.772	Chinchilla_lanigera
YDR021W	-	84	61.377	ENSCPBG00000017801	EIF4A3	98	61.377	Chrysemys_picta_bellii
YDR021W	-	97	61.954	ENSCING00000007818	-	94	61.954	Ciona_intestinalis
YDR021W	-	93	63.342	ENSCSAVG00000009920	-	99	63.342	Ciona_savignyi
YDR021W	-	99	54.177	ENSCANG00000043503	EIF4A3	95	54.177	Colobus_angolensis_palliatus
YDR021W	-	99	48.861	ENSCGRG00001018048	-	97	48.861	Cricetulus_griseus_chok1gshd
YDR021W	-	99	61.772	ENSCGRG00001022918	-	95	61.772	Cricetulus_griseus_chok1gshd
YDR021W	-	99	48.101	ENSCGRG00000001983	-	96	48.101	Cricetulus_griseus_crigri
YDR021W	-	89	62.640	ENSCGRG00000017119	-	99	62.640	Cricetulus_griseus_crigri
YDR021W	-	99	62.025	ENSCSEG00000021058	eif4a3	97	62.025	Cynoglossus_semilaevis
YDR021W	-	99	62.025	ENSCVAG00000006864	eif4a3	97	62.025	Cyprinodon_variegatus
YDR021W	-	99	61.519	ENSDARG00000102978	eif4a3	97	61.519	Danio_rerio
YDR021W	-	89	62.745	ENSDNOG00000009027	EIF4A3	96	62.745	Dasypus_novemcinctus
YDR021W	-	99	61.772	ENSDORG00000013028	-	95	61.772	Dipodomys_ordii
YDR021W	-	98	62.595	FBgn0037573	CG7483	98	62.595	Drosophila_melanogaster
YDR021W	-	98	62.437	ENSEBUG00000003713	eif4a3	91	62.437	Eptatretus_burgeri
YDR021W	-	99	61.772	ENSEASG00005005107	EIF4A3	95	61.772	Equus_asinus_asinus
YDR021W	-	99	61.772	ENSECAG00000015925	EIF4A3	95	61.772	Equus_caballus
YDR021W	-	99	56.709	ENSEEUG00000006008	EIF4A3	95	56.709	Erinaceus_europaeus
YDR021W	-	99	61.519	ENSELUG00000018528	eif4a3	97	61.519	Esox_lucius
YDR021W	-	99	61.772	ENSFCAG00000008246	EIF4A3	95	61.772	Felis_catus
YDR021W	-	89	62.745	ENSFALG00000002343	EIF4A3	99	62.745	Ficedula_albicollis
YDR021W	-	99	61.772	ENSFDAG00000020774	EIF4A3	95	61.772	Fukomys_damarensis
YDR021W	-	98	61.381	ENSGMOG00000001560	eif4a3	99	61.381	Gadus_morhua
YDR021W	-	99	61.772	ENSGALG00000008530	EIF4A3	95	61.772	Gallus_gallus
YDR021W	-	99	61.772	ENSGAFG00000013487	eif4a3	97	61.772	Gambusia_affinis
YDR021W	-	99	61.772	ENSGACG00000020004	eif4a3	97	61.772	Gasterosteus_aculeatus
YDR021W	-	99	61.772	ENSGAGG00000016434	EIF4A3	97	61.772	Gopherus_agassizii
YDR021W	-	99	61.772	ENSGGOG00000012918	EIF4A3	95	61.772	Gorilla_gorilla
YDR021W	-	99	61.772	ENSHBUG00000014892	eif4a3	97	61.772	Haplochromis_burtoni
YDR021W	-	99	61.772	ENSHGLG00000004635	EIF4A3	95	61.772	Heterocephalus_glaber_female
YDR021W	-	99	61.772	ENSHGLG00100006837	EIF4A3	95	61.772	Heterocephalus_glaber_male
YDR021W	-	97	54.545	ENSHCOG00000011335	eif4a3	84	54.545	Hippocampus_comes
YDR021W	-	99	61.519	ENSIPUG00000021785	eif4a3	97	61.519	Ictalurus_punctatus
YDR021W	-	99	61.772	ENSSTOG00000002664	EIF4A3	95	61.772	Ictidomys_tridecemlineatus
YDR021W	-	99	61.772	ENSJJAG00000015870	-	95	61.772	Jaculus_jaculus
YDR021W	-	99	61.266	ENSJJAG00000016503	-	95	61.266	Jaculus_jaculus
YDR021W	-	98	60.102	ENSKMAG00000010113	eif4a3	90	60.102	Kryptolebias_marmoratus
YDR021W	-	91	61.918	ENSLBEG00000020356	eif4a3	97	61.918	Labrus_bergylta
YDR021W	-	99	62.025	ENSLACG00000000108	EIF4A3	97	62.025	Latimeria_chalumnae
YDR021W	-	99	61.772	ENSLOCG00000015796	eif4a3	95	61.772	Lepisosteus_oculatus
YDR021W	-	99	61.772	ENSLAFG00000015628	EIF4A3	95	61.772	Loxodonta_africana
YDR021W	-	99	61.772	ENSMFAG00000043778	EIF4A3	95	61.772	Macaca_fascicularis
YDR021W	-	99	56.927	ENSMFAG00000018955	-	97	56.927	Macaca_fascicularis
YDR021W	-	98	56.923	ENSMMUG00000007050	-	96	56.923	Macaca_mulatta
YDR021W	-	99	61.519	ENSMMUG00000009590	EIF4A3	95	61.519	Macaca_mulatta
YDR021W	-	98	61.893	ENSMNEG00000039333	-	91	61.893	Macaca_nemestrina
YDR021W	-	99	57.179	ENSMNEG00000038447	-	98	57.179	Macaca_nemestrina
YDR021W	-	89	62.640	ENSMLEG00000032948	EIF4A3	99	62.640	Mandrillus_leucophaeus
YDR021W	-	99	61.772	ENSMAMG00000017369	eif4a3	97	61.772	Mastacembelus_armatus
YDR021W	-	99	56.456	ENSMZEG00005015371	eif4a3	96	56.456	Maylandia_zebra
YDR021W	-	99	61.772	ENSMZEG00005000259	-	97	61.772	Maylandia_zebra
YDR021W	-	89	62.745	ENSMGAG00000007270	EIF4A3	99	62.745	Meleagris_gallopavo
YDR021W	-	99	61.772	ENSMAUG00000012955	-	95	61.772	Mesocricetus_auratus
YDR021W	-	97	60.309	ENSMICG00000041585	-	93	60.309	Microcebus_murinus
YDR021W	-	97	59.794	ENSMICG00000045127	-	95	59.794	Microcebus_murinus
YDR021W	-	97	60.567	ENSMICG00000044243	-	95	60.567	Microcebus_murinus
YDR021W	-	99	61.013	ENSMICG00000034467	-	97	61.013	Microcebus_murinus
YDR021W	-	99	57.895	ENSMICG00000009136	-	95	57.895	Microcebus_murinus
YDR021W	-	99	57.071	ENSMICG00000011946	-	95	57.071	Microcebus_murinus
YDR021W	-	99	44.638	ENSMOCG00000017297	-	95	43.890	Microtus_ochrogaster
YDR021W	-	99	57.975	ENSMMOG00000018352	eif4a3	90	57.975	Mola_mola
YDR021W	-	99	61.772	ENSMODG00000002190	-	95	61.772	Monodelphis_domestica
YDR021W	-	99	59.898	ENSMODG00000003697	-	95	59.898	Monodelphis_domestica
YDR021W	-	99	61.519	ENSMALG00000016324	eif4a3	97	61.519	Monopterus_albus
YDR021W	-	99	61.772	MGP_CAROLIEiJ_G0017495	-	95	61.772	Mus_caroli
YDR021W	-	99	61.519	ENSMUSG00000025580	Eif4a3	95	61.519	Mus_musculus
YDR021W	-	97	61.183	ENSMUSG00000107906	Gm5580	94	61.183	Mus_musculus
YDR021W	-	97	61.183	ENSMUSG00000094973	Gm8994	94	61.183	Mus_musculus
YDR021W	-	99	61.772	MGP_PahariEiJ_G0018622	-	95	61.772	Mus_pahari
YDR021W	-	99	61.772	MGP_SPRETEiJ_G0018339	Eif4a3	95	61.772	Mus_spretus
YDR021W	-	89	62.745	ENSMPUG00000012216	EIF4A3	84	62.745	Mustela_putorius_furo
YDR021W	-	90	55.153	ENSMLUG00000024690	-	99	55.153	Myotis_lucifugus
YDR021W	-	87	59.942	ENSMLUG00000009585	-	99	59.942	Myotis_lucifugus
YDR021W	-	99	61.266	ENSMLUG00000012233	-	95	61.266	Myotis_lucifugus
YDR021W	-	99	61.772	ENSNGAG00000003189	-	95	61.772	Nannospalax_galili
YDR021W	-	99	61.772	ENSNBRG00000021671	eif4a3	97	61.772	Neolamprologus_brichardi
YDR021W	-	99	61.772	ENSNLEG00000015595	EIF4A3	95	61.772	Nomascus_leucogenys
YDR021W	-	99	54.430	ENSMEUG00000008521	EIF4A3	95	54.430	Notamacropus_eugenii
YDR021W	-	99	61.772	ENSODEG00000010300	EIF4A3	95	61.772	Octodon_degus
YDR021W	-	99	61.772	ENSONIG00000019828	eif4a3	97	61.772	Oreochromis_niloticus
YDR021W	-	69	58.182	ENSOANG00000000334	EIF4A3	95	58.182	Ornithorhynchus_anatinus
YDR021W	-	99	62.025	ENSORLG00000018405	eif4a3	97	62.025	Oryzias_latipes
YDR021W	-	99	62.025	ENSOMEG00000007998	eif4a3	97	62.025	Oryzias_melastigma
YDR021W	-	99	61.772	ENSOGAG00000007495	-	95	61.772	Otolemur_garnettii
YDR021W	-	99	61.266	ENSOGAG00000026206	-	95	61.266	Otolemur_garnettii
YDR021W	-	99	61.772	ENSOARG00000002169	-	95	61.772	Ovis_aries
YDR021W	-	99	59.391	ENSOARG00000005144	-	95	59.391	Ovis_aries
YDR021W	-	92	54.201	ENSPPAG00000021017	-	93	54.201	Pan_paniscus
YDR021W	-	99	61.772	ENSPPRG00000021873	EIF4A3	95	61.772	Panthera_pardus
YDR021W	-	91	61.878	ENSPTIG00000009646	EIF4A3	99	61.878	Panthera_tigris_altaica
YDR021W	-	99	60.859	ENSPTRG00000009737	EIF4A3	95	60.859	Pan_troglodytes
YDR021W	-	99	61.772	ENSPANG00000019672	-	95	61.772	Papio_anubis
YDR021W	-	99	56.456	ENSPANG00000021217	-	95	56.456	Papio_anubis
YDR021W	-	98	61.578	ENSPKIG00000016912	eif4a3	96	61.578	Paramormyrops_kingsleyae
YDR021W	-	70	61.922	ENSPSIG00000004036	EIF4A3	99	61.922	Pelodiscus_sinensis
YDR021W	-	99	61.772	ENSPEMG00000009441	-	95	61.772	Peromyscus_maniculatus_bairdii
YDR021W	-	93	61.497	ENSPCIG00000005856	-	98	62.606	Phascolarctos_cinereus
YDR021W	-	99	61.772	ENSPFOG00000009300	eif4a3	94	61.772	Poecilia_formosa
YDR021W	-	99	61.772	ENSPLAG00000007436	eif4a3	97	61.772	Poecilia_latipinna
YDR021W	-	99	61.772	ENSPMEG00000008078	eif4a3	97	61.772	Poecilia_mexicana
YDR021W	-	99	61.772	ENSPREG00000006006	eif4a3	97	61.772	Poecilia_reticulata
YDR021W	-	99	61.772	ENSPPYG00000008714	EIF4A3	95	61.772	Pongo_abelii
YDR021W	-	99	48.363	ENSPCAG00000002931	EIF4A3	95	48.363	Procavia_capensis
YDR021W	-	99	61.772	ENSPCOG00000020004	EIF4A3	95	61.772	Propithecus_coquereli
YDR021W	-	99	61.772	ENSPVAG00000003627	EIF4A3	95	61.772	Pteropus_vampyrus
YDR021W	-	99	61.772	ENSPNYG00000016865	eif4a3	97	61.772	Pundamilia_nyererei
YDR021W	-	99	62.025	ENSPNAG00000008053	eif4a3	97	62.025	Pygocentrus_nattereri
YDR021W	-	99	61.772	ENSRNOG00000045791	Eif4a3	95	61.772	Rattus_norvegicus
YDR021W	-	99	61.772	ENSRBIG00000029705	EIF4A3	95	61.772	Rhinopithecus_bieti
YDR021W	-	99	61.772	ENSRROG00000042322	EIF4A3	95	61.772	Rhinopithecus_roxellana
YDR021W	-	99	61.772	ENSSBOG00000024694	EIF4A3	95	61.772	Saimiri_boliviensis_boliviensis
YDR021W	-	99	61.519	ENSSHAG00000005751	-	95	61.519	Sarcophilus_harrisii
YDR021W	-	99	61.772	ENSSHAG00000004638	-	87	61.772	Sarcophilus_harrisii
YDR021W	-	98	61.578	ENSSFOG00015022017	eif4a3	96	61.578	Scleropages_formosus
YDR021W	-	98	61.069	ENSSFOG00015004896	-	96	61.069	Scleropages_formosus
YDR021W	-	99	61.519	ENSSMAG00000021078	eif4a3	97	61.519	Scophthalmus_maximus
YDR021W	-	99	61.772	ENSSDUG00000021512	eif4a3	97	61.772	Seriola_dumerili
YDR021W	-	88	61.864	ENSSLDG00000010112	eif4a3	90	61.864	Seriola_lalandi_dorsalis
YDR021W	-	56	59.111	ENSSARG00000009017	-	99	59.111	Sorex_araneus
YDR021W	-	99	61.772	ENSSPUG00000013935	EIF4A3	96	61.772	Sphenodon_punctatus
YDR021W	-	98	61.893	ENSSPAG00000017012	eif4a3	95	61.893	Stegastes_partitus
YDR021W	-	99	61.772	ENSSSCG00000017155	EIF4A3	95	61.772	Sus_scrofa
YDR021W	-	83	61.747	ENSTGUG00000002132	EIF4A3	99	61.747	Taeniopygia_guttata
YDR021W	-	99	62.025	ENSTRUG00000011543	eif4a3	97	62.025	Takifugu_rubripes
YDR021W	-	99	61.869	ENSTNIG00000002924	eif4a3	95	61.869	Tetraodon_nigroviridis
YDR021W	-	89	56.742	ENSTTRG00000000514	EIF4A3	99	56.742	Tursiops_truncatus
YDR021W	-	99	61.772	ENSUAMG00000027453	EIF4A3	95	61.772	Ursus_americanus
YDR021W	-	92	61.141	ENSUMAG00000014617	EIF4A3	99	62.323	Ursus_maritimus
YDR021W	-	99	61.772	ENSVVUG00000017984	EIF4A3	95	61.772	Vulpes_vulpes
YDR021W	-	99	61.772	ENSXETG00000013720	eif4a3	94	61.772	Xenopus_tropicalis
YDR021W	-	98	61.893	ENSXCOG00000010824	eif4a3	95	61.893	Xiphophorus_couchianus
YDR021W	-	99	61.772	ENSXMAG00000014111	eif4a3	97	61.772	Xiphophorus_maculatus