EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YDR120C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1713
Position: chrIV:691549-693261
Accession: S000002527
RBP type: canonical RBP
Summary: tRNA methyltransferase%3B two forms of protein are made by alternative translation starts%3B localizes to both nucleus and mitochondrion to produce modified base N2%2CN2-dimethylguanosine in tRNAs in both compartments%3B nuclear Trm1p is evenly distributed around inner nuclear membrane in WT%2C but mislocalizes as puncta near ER-nucleus junctions in spindle pole body (SPB) mutants%3B both Trm1p inner nuclear membrane targeting and maintenance depend upon SPB

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDR120C_mRNA	TRM	PF02005.16	4.4e-158	1	1
YDR120C_mRNA	Met_10	PF02475.16	8.7e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
21124907	A screen for RNA binding proteins in yeast indicates dual functions for many enzymes	ProtoArray & yeast	2010 Nov 11	DOI: 10.1371/journal.pone.0015499

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDR120C_mRNA	-	1713	-	YDR120C_mRNA	570 (aa)	-	P15565

Gene Model

Click here to download YDR120C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YDR120C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDR120C	-	94	37.024	ENSG00000104907	TRMT1	99	46.193	Homo_sapiens
YDR120C	-	92	37.009	ENSAMEG00000012598	TRMT1	76	36.567	Ailuropoda_melanoleuca
YDR120C	-	92	33.959	ENSACIG00000018680	trmt1	78	33.771	Amphilophus_citrinellus
YDR120C	-	92	37.218	ENSAOCG00000006781	trmt1	76	37.218	Amphiprion_ocellaris
YDR120C	-	92	37.030	ENSAPEG00000007712	trmt1	76	37.030	Amphiprion_percula
YDR120C	-	92	38.837	ENSATEG00000001872	trmt1	76	38.649	Anabas_testudineus
YDR120C	-	92	37.175	ENSACAG00000003825	TRMT1	82	37.175	Anolis_carolinensis
YDR120C	-	92	37.848	ENSANAG00000023016	TRMT1	82	37.266	Aotus_nancymaae
YDR120C	-	92	37.989	ENSACLG00000010073	trmt1	83	37.711	Astatotilapia_calliptera
YDR120C	-	92	36.716	ENSAMXG00000012026	trmt1	77	36.162	Astyanax_mexicanus
YDR120C	-	92	37.687	ENSBTAG00000019325	TRMT1	72	37.313	Bos_taurus
YDR120C	-	93	34.191	WBGene00006613	trm-1	94	33.886	Caenorhabditis_elegans
YDR120C	-	92	37.453	ENSCJAG00000004566	TRMT1	78	37.453	Callithrix_jacchus
YDR120C	-	92	37.757	ENSCAFG00000017070	TRMT1	80	37.127	Canis_familiaris
YDR120C	-	92	37.196	ENSCAFG00020005397	TRMT1	79	36.194	Canis_lupus_dingo
YDR120C	-	92	37.291	ENSCHIG00000013569	TRMT1	77	37.058	Capra_hircus
YDR120C	-	87	37.059	ENSTSYG00000003207	TRMT1	76	37.037	Carlito_syrichta
YDR120C	-	76	38.813	ENSCAPG00000003355	TRMT1	75	38.813	Cavia_aperea
YDR120C	-	92	36.735	ENSCPOG00000011754	TRMT1	77	36.735	Cavia_porcellus
YDR120C	-	92	37.064	ENSCCAG00000022263	TRMT1	82	36.330	Cebus_capucinus
YDR120C	-	76	32.506	ENSCATG00000038220	-	78	32.506	Cercocebus_atys
YDR120C	-	92	37.430	ENSCATG00000039850	TRMT1	77	37.430	Cercocebus_atys
YDR120C	-	92	37.037	ENSCLAG00000015295	TRMT1	80	36.397	Chinchilla_lanigera
YDR120C	-	83	37.988	ENSCSAG00000006500	TRMT1	89	37.988	Chlorocebus_sabaeus
YDR120C	-	92	37.873	ENSCPBG00000023866	TRMT1	76	37.593	Chrysemys_picta_bellii
YDR120C	-	92	35.094	ENSCING00000002884	-	91	35.094	Ciona_intestinalis
YDR120C	-	92	34.915	ENSCSAVG00000010927	-	95	34.019	Ciona_savignyi
YDR120C	-	92	30.000	ENSCANG00000040631	TRMT1	76	30.019	Colobus_angolensis_palliatus
YDR120C	-	92	37.313	ENSCGRG00001022594	Trmt1	78	37.127	Cricetulus_griseus_chok1gshd
YDR120C	-	92	37.313	ENSCGRG00000017732	Trmt1	77	37.127	Cricetulus_griseus_crigri
YDR120C	-	94	37.004	ENSCSEG00000001643	trmt1	87	36.823	Cynoglossus_semilaevis
YDR120C	-	92	38.679	ENSCVAG00000011886	trmt1	77	38.679	Cyprinodon_variegatus
YDR120C	-	92	36.528	ENSDARG00000010978	trmt1	77	36.447	Danio_rerio
YDR120C	-	94	35.753	ENSDORG00000014298	Trmt1	78	35.337	Dipodomys_ordii
YDR120C	-	92	37.214	FBgn0032430	CG6388	87	37.214	Drosophila_melanogaster
YDR120C	-	92	32.068	ENSEBUG00000003449	trmt1	73	32.068	Eptatretus_burgeri
YDR120C	-	92	37.175	ENSEASG00005004050	TRMT1	80	36.989	Equus_asinus_asinus
YDR120C	-	92	37.175	ENSECAG00000016149	TRMT1	80	36.989	Equus_caballus
YDR120C	-	93	35.596	ENSELUG00000021659	trmt1	77	35.846	Esox_lucius
YDR120C	-	94	36.861	ENSFCAG00000000483	TRMT1	79	36.545	Felis_catus
YDR120C	-	92	37.244	ENSFDAG00000007386	TRMT1	77	37.244	Fukomys_damarensis
YDR120C	-	92	38.519	ENSFHEG00000012865	trmt1	85	38.246	Fundulus_heteroclitus
YDR120C	-	83	34.855	ENSGMOG00000006564	trmt1	82	35.135	Gadus_morhua
YDR120C	-	92	38.606	ENSGAFG00000011862	trmt1	79	38.606	Gambusia_affinis
YDR120C	-	92	37.430	ENSGACG00000000227	trmt1	82	37.640	Gasterosteus_aculeatus
YDR120C	-	92	37.873	ENSGAGG00000016432	TRMT1	80	36.762	Gopherus_agassizii
YDR120C	-	94	37.024	ENSGGOG00000014007	TRMT1	79	37.024	Gorilla_gorilla
YDR120C	-	92	35.714	ENSHBUG00000008821	trmt1	84	35.782	Haplochromis_burtoni
YDR120C	-	92	37.153	ENSHGLG00000015972	TRMT1	78	37.153	Heterocephalus_glaber_female
YDR120C	-	83	37.805	ENSHGLG00100018112	TRMT1	78	37.805	Heterocephalus_glaber_male
YDR120C	-	92	37.017	ENSHCOG00000009447	trmt1	79	37.017	Hippocampus_comes
YDR120C	-	92	36.347	ENSIPUG00000002899	trmt1	77	37.024	Ictalurus_punctatus
YDR120C	-	92	37.616	ENSSTOG00000012531	TRMT1	78	37.616	Ictidomys_tridecemlineatus
YDR120C	-	92	37.778	ENSJJAG00000017154	Trmt1	78	37.778	Jaculus_jaculus
YDR120C	-	92	38.910	ENSKMAG00000011809	trmt1	85	38.302	Kryptolebias_marmoratus
YDR120C	-	92	38.649	ENSLBEG00000012703	trmt1	75	38.649	Labrus_bergylta
YDR120C	-	92	35.581	ENSLACG00000014585	TRMT1	84	35.448	Latimeria_chalumnae
YDR120C	-	83	38.703	ENSLOCG00000006479	trmt1	82	38.703	Lepisosteus_oculatus
YDR120C	-	92	37.944	ENSLAFG00000014072	TRMT1	78	37.453	Loxodonta_africana
YDR120C	-	92	37.244	ENSMFAG00000033143	TRMT1	77	37.244	Macaca_fascicularis
YDR120C	-	92	35.874	ENSMMUG00000001167	TRMT1	80	35.874	Macaca_mulatta
YDR120C	-	92	37.430	ENSMNEG00000037867	TRMT1	77	37.430	Macaca_nemestrina
YDR120C	-	92	37.244	ENSMLEG00000016142	TRMT1	77	37.244	Mandrillus_leucophaeus
YDR120C	-	92	38.086	ENSMAMG00000004357	trmt1	76	38.274	Mastacembelus_armatus
YDR120C	-	92	37.711	ENSMZEG00005014510	trmt1	76	37.711	Maylandia_zebra
YDR120C	-	92	37.269	ENSMAUG00000011134	Trmt1	77	37.085	Mesocricetus_auratus
YDR120C	-	92	37.058	ENSMICG00000000793	TRMT1	77	37.058	Microcebus_murinus
YDR120C	-	92	37.017	ENSMOCG00000015895	Trmt1	78	37.017	Microtus_ochrogaster
YDR120C	-	98	35.664	ENSMMOG00000011097	trmt1	89	35.664	Mola_mola
YDR120C	-	92	36.704	ENSMODG00000011619	TRMT1	82	36.704	Monodelphis_domestica
YDR120C	-	92	37.594	MGP_CAROLIEiJ_G0031304	Trmt1	87	39.912	Mus_caroli
YDR120C	-	92	37.406	ENSMUSG00000001909	Trmt1	87	39.912	Mus_musculus
YDR120C	-	92	37.406	MGP_SPRETEiJ_G0032422	Trmt1	87	40.351	Mus_spretus
YDR120C	-	92	37.757	ENSMPUG00000004210	TRMT1	73	37.313	Mustela_putorius_furo
YDR120C	-	92	37.196	ENSMLUG00000012809	TRMT1	76	36.431	Myotis_lucifugus
YDR120C	-	92	37.757	ENSNGAG00000022486	Trmt1	77	37.196	Nannospalax_galili
YDR120C	-	78	38.926	ENSNBRG00000024376	trmt1	75	38.926	Neolamprologus_brichardi
YDR120C	-	70	41.584	ENSNLEG00000013019	-	73	41.639	Nomascus_leucogenys
YDR120C	-	92	36.996	ENSMEUG00000013756	TRMT1	87	36.704	Notamacropus_eugenii
YDR120C	-	65	38.032	ENSOPRG00000009471	-	61	51.220	Ochotona_princeps
YDR120C	-	98	36.222	ENSODEG00000010323	TRMT1	83	35.702	Octodon_degus
YDR120C	-	92	38.476	ENSONIG00000000400	trmt1	82	38.390	Oreochromis_niloticus
YDR120C	-	83	38.557	ENSOCUG00000021934	TRMT1	89	37.988	Oryctolagus_cuniculus
YDR120C	-	92	37.336	ENSORLG00000020074	trmt1	81	37.523	Oryzias_latipes
YDR120C	-	92	38.086	ENSORLG00020007561	trmt1	80	37.570	Oryzias_latipes_hni
YDR120C	-	92	38.274	ENSORLG00015006547	trmt1	77	38.274	Oryzias_latipes_hsok
YDR120C	-	92	38.649	ENSOMEG00000019343	trmt1	78	38.649	Oryzias_melastigma
YDR120C	-	92	36.754	ENSOGAG00000025576	TRMT1	80	36.617	Otolemur_garnettii
YDR120C	-	78	36.429	ENSOARG00000009397	TRMT1	71	30.627	Ovis_aries
YDR120C	-	94	33.455	ENSPPRG00000012117	TRMT1	78	33.942	Panthera_pardus
YDR120C	-	50	41.695	ENSPTIG00000008833	TRMT1	71	41.554	Panthera_tigris_altaica
YDR120C	-	94	37.024	ENSPTRG00000010557	TRMT1	79	37.024	Pan_troglodytes
YDR120C	-	76	31.651	ENSPTRG00000050421	-	63	31.651	Pan_troglodytes
YDR120C	-	76	31.603	ENSPANG00000034058	-	76	31.603	Papio_anubis
YDR120C	-	92	37.244	ENSPANG00000009247	TRMT1	77	37.244	Papio_anubis
YDR120C	-	92	37.689	ENSPKIG00000005309	trmt1	75	38.318	Paramormyrops_kingsleyae
YDR120C	-	92	33.581	ENSPSIG00000008762	TRMT1	74	33.581	Pelodiscus_sinensis
YDR120C	-	92	37.879	ENSPMGG00000019764	trmt1	81	37.879	Periophthalmus_magnuspinnatus
YDR120C	-	92	38.547	ENSPEMG00000016247	Trmt1	76	38.920	Peromyscus_maniculatus_bairdii
YDR120C	-	91	35.564	ENSPMAG00000004329	trmt1	80	35.564	Petromyzon_marinus
YDR120C	-	92	36.704	ENSPCIG00000019273	TRMT1	79	36.704	Phascolarctos_cinereus
YDR120C	-	92	39.360	ENSPFOG00000008527	trmt1	79	39.360	Poecilia_formosa
YDR120C	-	92	39.171	ENSPLAG00000018788	trmt1	86	39.171	Poecilia_latipinna
YDR120C	-	92	39.360	ENSPMEG00000013120	trmt1	79	39.171	Poecilia_mexicana
YDR120C	-	92	38.983	ENSPREG00000000211	trmt1	76	38.795	Poecilia_reticulata
YDR120C	-	94	36.661	ENSPPYG00000009622	TRMT1	79	36.661	Pongo_abelii
YDR120C	-	92	35.261	ENSPCAG00000003698	TRMT1	78	35.261	Procavia_capensis
YDR120C	-	92	37.313	ENSPCOG00000008653	TRMT1	77	36.822	Propithecus_coquereli
YDR120C	-	92	37.757	ENSPVAG00000015076	TRMT1	77	37.687	Pteropus_vampyrus
YDR120C	-	98	35.315	ENSPNYG00000013960	trmt1	89	35.315	Pundamilia_nyererei
YDR120C	-	82	68.966	ENSPNAG00000024859	trmt1	78	68.966	Pygocentrus_nattereri
YDR120C	-	92	37.030	ENSRNOG00000002914	Trmt1	79	36.466	Rattus_norvegicus
YDR120C	-	92	37.430	ENSRBIG00000038324	TRMT1	77	37.430	Rhinopithecus_bieti
YDR120C	-	92	37.430	ENSRROG00000028599	TRMT1	77	37.430	Rhinopithecus_roxellana
YDR120C	-	92	37.244	ENSSBOG00000028861	TRMT1	82	36.654	Saimiri_boliviensis_boliviensis
YDR120C	-	92	36.704	ENSSHAG00000014381	TRMT1	83	36.704	Sarcophilus_harrisii
YDR120C	-	92	39.252	ENSSFOG00015004139	trmt1	75	39.252	Scleropages_formosus
YDR120C	-	93	39.187	ENSSMAG00000021136	trmt1	77	39.187	Scophthalmus_maximus
YDR120C	-	93	38.476	ENSSDUG00000012740	trmt1	76	38.662	Seriola_dumerili
YDR120C	-	93	38.476	ENSSLDG00000005971	trmt1	76	38.662	Seriola_lalandi_dorsalis
YDR120C	-	92	36.245	ENSSARG00000005138	TRMT1	90	36.245	Sorex_araneus
YDR120C	-	92	30.337	ENSSPUG00000001084	TRMT1	86	30.726	Sphenodon_punctatus
YDR120C	-	92	38.679	ENSSPAG00000007153	trmt1	84	38.868	Stegastes_partitus
YDR120C	-	92	38.041	ENSSSCG00000013744	TRMT1	80	37.853	Sus_scrofa
YDR120C	-	92	35.240	ENSTRUG00000010700	trmt1	78	35.531	Takifugu_rubripes
YDR120C	-	92	37.170	ENSTNIG00000018808	trmt1	87	37.170	Tetraodon_nigroviridis
YDR120C	-	92	36.822	ENSTTRG00000006379	TRMT1	77	36.765	Tursiops_truncatus
YDR120C	-	92	37.127	ENSUAMG00000022911	TRMT1	85	35.807	Ursus_americanus
YDR120C	-	92	37.009	ENSUMAG00000006027	TRMT1	80	36.754	Ursus_maritimus
YDR120C	-	92	37.757	ENSVVUG00000024177	TRMT1	77	37.127	Vulpes_vulpes
YDR120C	-	79	39.825	ENSXETG00000033863	TRMT1	89	39.606	Xenopus_tropicalis
YDR120C	-	92	39.736	ENSXCOG00000015733	trmt1	79	40.226	Xiphophorus_couchianus
YDR120C	-	92	39.548	ENSXMAG00000013823	trmt1	88	39.736	Xiphophorus_maculatus