EuRBPDB

Description

Ensembl ID: YDR172W (Gene tree)
Gene ID: -
Gene Symbol: SUP35
Alias: GST1|PNM2|SAL3|SUF12|SUP2|SUP36
Full Name: Translation termination factor eRF3%3B has a role in mRNA deadenylation and decay%3B altered protein conformation creates the
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 2058 bases
Position: chrIV:808324-810381
Accession: S000002579
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDR172W_mRNA	GTP_EFTU	PF00009.27	2.2e-45	1	1
YDR172W_mRNA	GTP_EFTU_D2	PF03144.25	8.2e-09	1	1
YDR172W_mRNA	GTP_EFTU_D3	PF03143.17	2.3e-36	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDR172W_mRNA	-	2058	-	YDR172W_mRNA	685 (aa)	-	P05453

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YDR172W	SUP35	62	30.357	YKR084C	-	73	30.357
YDR172W	SUP35	62	37.671	YPR080W	TEF1	94	37.671
YDR172W	SUP35	62	37.671	YBR118W	TEF2	94	37.671

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDR172W	SUP35	62	50.117	WBGene00010405	erfa-3	95	57.500	Caenorhabditis_elegans
YDR172W	SUP35	63	56.019	ENSCING00000007500	-	77	56.019	Ciona_intestinalis
YDR172W	SUP35	62	53.972	FBgn0020443	eRF3	86	53.972	Drosophila_melanogaster