EuRBPDB

Description

Ensembl ID: YDR194C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1995
Position: chrIV:845952-847946
Accession: S000002602
RBP type: canonical RBP
Summary: Mitochondrial transcription elongation factor%3B DEAD-box protein%3B required for efficient splicing of mitochondrial Group I and II introns%3B non-polar RNA helicase that also facilities strand annealing%3B promotes RNA folding by stabilizing an early assembly intermediate

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDR194C_mRNA	ResIII	PF04851.15	1.6e-07	1	1
YDR194C_mRNA	DEAD	PF00270.29	5.4e-44	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDR194C_mRNA	-	1995	-	YDR194C_mRNA	664 (aa)	-	P15424

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YDR194C	-	62	30.445	YOR204W	DED1	64	30.445
YDR194C	-	67	30.621	YPL119C	DBP1	66	31.702
YDR194C	-	57	30.233	YKR059W	TIF1	88	30.548
YDR194C	-	51	30.986	YNL112W	-	60	30.645
YDR194C	-	58	31.579	YHR169W	-	85	31.407
YDR194C	-	57	34.447	YHR065C	-	69	34.615
YDR194C	-	65	35.632	YMR290C	-	80	35.632
YDR194C	-	59	31.333	YBR142W	-	57	31.385
YDR194C	-	57	30.233	YJL138C	TIF2	88	30.548
YDR194C	-	56	34.048	YGL078C	-	66	34.048
YDR194C	-	59	30.653	YDR021W	-	92	30.653
YDR194C	-	56	31.250	YDR243C	-	62	31.250