EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YDR280W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 918
Position: chrIV:1020747-1021664
Accession: S000002688
RBP type: canonical RBP
Summary: Exosome non-catalytic core component%3B involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm%3B has similarity to E. coli RNase PH and to human hRrp45p (PM/SCL-75%2C EXOSC9)%3B protein abundance increases in response to DNA replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDR280W_mRNA	RNase_PH	PF01138.21	1.7e-20	1	1
YDR280W_mRNA	RNase_PH_C	PF03725.15	9.9e-20	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDR280W_mRNA	-	918	-	YDR280W_mRNA	305 (aa)	-	Q05636

Gene Model

Click here to download YDR280W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YDR280W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDR280W	-	95	34.828	ENSG00000123737	EXOSC9	98	36.255	Homo_sapiens
YDR280W	-	94	37.153	ENSAPOG00000001202	exosc9	64	37.153	Acanthochromis_polyacanthus
YDR280W	-	95	34.483	ENSAMEG00000006133	EXOSC9	63	34.483	Ailuropoda_melanoleuca
YDR280W	-	94	35.417	ENSACIG00000013514	exosc9	71	35.417	Amphilophus_citrinellus
YDR280W	-	94	36.458	ENSAOCG00000023602	exosc9	64	36.458	Amphiprion_ocellaris
YDR280W	-	94	36.806	ENSAPEG00000014416	exosc9	64	36.806	Amphiprion_percula
YDR280W	-	94	35.764	ENSATEG00000023032	exosc9	70	35.764	Anabas_testudineus
YDR280W	-	78	35.714	ENSAPLG00000004920	EXOSC9	58	35.714	Anas_platyrhynchos
YDR280W	-	95	34.483	ENSACAG00000012689	EXOSC9	63	34.483	Anolis_carolinensis
YDR280W	-	95	34.483	ENSANAG00000024817	EXOSC9	63	34.483	Aotus_nancymaae
YDR280W	-	94	35.764	ENSACLG00000011471	exosc9	70	35.764	Astatotilapia_calliptera
YDR280W	-	95	35.862	ENSAMXG00000031976	exosc9	73	35.862	Astyanax_mexicanus
YDR280W	-	95	34.483	ENSBTAG00000004942	EXOSC9	63	34.483	Bos_taurus
YDR280W	-	94	34.495	WBGene00018154	exos-9	63	34.495	Caenorhabditis_elegans
YDR280W	-	95	34.138	ENSCJAG00000003038	EXOSC9	63	34.138	Callithrix_jacchus
YDR280W	-	95	34.483	ENSCAFG00000004139	EXOSC9	63	34.483	Canis_familiaris
YDR280W	-	95	34.483	ENSCAFG00020017711	EXOSC9	63	34.483	Canis_lupus_dingo
YDR280W	-	95	34.483	ENSCHIG00000018091	EXOSC9	63	34.483	Capra_hircus
YDR280W	-	95	34.483	ENSTSYG00000002664	EXOSC9	63	34.483	Carlito_syrichta
YDR280W	-	95	34.483	ENSCPOG00000034344	EXOSC9	63	34.483	Cavia_porcellus
YDR280W	-	95	30.690	ENSCCAG00000030677	EXOSC9	62	30.690	Cebus_capucinus
YDR280W	-	95	34.828	ENSCATG00000044273	EXOSC9	63	34.828	Cercocebus_atys
YDR280W	-	95	34.483	ENSCLAG00000004644	EXOSC9	63	34.483	Chinchilla_lanigera
YDR280W	-	95	34.828	ENSCSAG00000003705	EXOSC9	63	34.828	Chlorocebus_sabaeus
YDR280W	-	95	35.862	ENSCPBG00000024725	EXOSC9	63	35.862	Chrysemys_picta_bellii
YDR280W	-	97	33.670	ENSCSAVG00000002868	-	72	33.670	Ciona_savignyi
YDR280W	-	95	34.828	ENSCANG00000037429	EXOSC9	63	34.828	Colobus_angolensis_palliatus
YDR280W	-	94	35.069	ENSCGRG00001023030	Exosc9	63	34.828	Cricetulus_griseus_chok1gshd
YDR280W	-	94	35.069	ENSCGRG00000003785	Exosc9	63	34.828	Cricetulus_griseus_crigri
YDR280W	-	82	30.040	ENSCSEG00000019201	exosc8	86	30.357	Cynoglossus_semilaevis
YDR280W	-	95	36.332	ENSCSEG00000014567	exosc9	69	36.332	Cynoglossus_semilaevis
YDR280W	-	95	35.986	ENSCVAG00000001098	exosc9	64	35.986	Cyprinodon_variegatus
YDR280W	-	95	34.828	ENSDARG00000006392	exosc9	70	35.172	Danio_rerio
YDR280W	-	95	34.138	ENSDNOG00000010614	EXOSC9	63	34.138	Dasypus_novemcinctus
YDR280W	-	83	36.905	ENSDORG00000007684	Exosc9	93	36.905	Dipodomys_ordii
YDR280W	-	93	32.056	FBgn0030789	Rrp45	66	32.056	Drosophila_melanogaster
YDR280W	-	95	33.448	ENSETEG00000015190	EXOSC9	63	33.448	Echinops_telfairi
YDR280W	-	95	34.483	ENSEASG00005018326	EXOSC9	63	34.483	Equus_asinus_asinus
YDR280W	-	95	34.483	ENSECAG00000024732	EXOSC9	63	34.483	Equus_caballus
YDR280W	-	76	34.483	ENSEEUG00000013683	EXOSC9	51	35.043	Erinaceus_europaeus
YDR280W	-	94	35.764	ENSELUG00000011222	exosc9	63	35.764	Esox_lucius
YDR280W	-	95	33.333	ENSFCAG00000025246	EXOSC9	62	33.333	Felis_catus
YDR280W	-	95	34.932	ENSFALG00000008302	EXOSC9	63	34.932	Ficedula_albicollis
YDR280W	-	95	34.483	ENSFDAG00000014446	EXOSC9	63	34.483	Fukomys_damarensis
YDR280W	-	54	31.548	ENSFHEG00000009565	exosc7	58	31.548	Fundulus_heteroclitus
YDR280W	-	95	36.552	ENSGMOG00000014066	exosc9	73	36.552	Gadus_morhua
YDR280W	-	95	35.862	ENSGALG00000011884	EXOSC9	63	35.862	Gallus_gallus
YDR280W	-	87	30.147	ENSGAFG00000020868	exosc8	92	30.147	Gambusia_affinis
YDR280W	-	94	36.458	ENSGAFG00000015284	exosc9	64	36.458	Gambusia_affinis
YDR280W	-	95	35.172	ENSGACG00000018481	exosc9	67	35.172	Gasterosteus_aculeatus
YDR280W	-	95	35.517	ENSGAGG00000016512	EXOSC9	63	35.517	Gopherus_agassizii
YDR280W	-	95	34.828	ENSGGOG00000028227	EXOSC9	63	34.828	Gorilla_gorilla
YDR280W	-	94	35.764	ENSHBUG00000001818	exosc9	71	35.764	Haplochromis_burtoni
YDR280W	-	95	34.483	ENSHGLG00000002467	-	63	34.483	Heterocephalus_glaber_female
YDR280W	-	97	32.215	ENSHGLG00000000611	-	69	32.215	Heterocephalus_glaber_female
YDR280W	-	97	32.215	ENSHGLG00100007278	-	67	32.215	Heterocephalus_glaber_male
YDR280W	-	95	34.483	ENSHGLG00100015581	EXOSC9	63	34.483	Heterocephalus_glaber_male
YDR280W	-	94	35.764	ENSHCOG00000013001	exosc9	68	33.681	Hippocampus_comes
YDR280W	-	95	34.138	ENSIPUG00000004443	EXOSC9	70	34.138	Ictalurus_punctatus
YDR280W	-	95	34.138	ENSSTOG00000007984	EXOSC9	63	34.138	Ictidomys_tridecemlineatus
YDR280W	-	83	36.508	ENSJJAG00000008858	Exosc9	99	36.471	Jaculus_jaculus
YDR280W	-	95	36.332	ENSKMAG00000020177	exosc9	65	36.332	Kryptolebias_marmoratus
YDR280W	-	95	35.986	ENSLBEG00000019599	exosc9	64	35.986	Labrus_bergylta
YDR280W	-	87	30.515	ENSLBEG00000020568	exosc8	92	30.453	Labrus_bergylta
YDR280W	-	76	30.213	ENSLACG00000009536	EXOSC8	91	30.213	Latimeria_chalumnae
YDR280W	-	94	36.678	ENSLOCG00000002999	exosc9	98	36.678	Lepisosteus_oculatus
YDR280W	-	95	34.483	ENSLAFG00000009514	EXOSC9	63	34.483	Loxodonta_africana
YDR280W	-	95	34.828	ENSMFAG00000038292	EXOSC9	63	34.828	Macaca_fascicularis
YDR280W	-	95	34.828	ENSMMUG00000009816	EXOSC9	96	36.585	Macaca_mulatta
YDR280W	-	95	34.828	ENSMNEG00000029445	EXOSC9	63	34.828	Macaca_nemestrina
YDR280W	-	95	34.828	ENSMLEG00000042316	EXOSC9	63	34.828	Mandrillus_leucophaeus
YDR280W	-	95	35.986	ENSMAMG00000006465	exosc9	64	35.986	Mastacembelus_armatus
YDR280W	-	94	35.764	ENSMZEG00005011461	exosc9	70	35.764	Maylandia_zebra
YDR280W	-	83	36.364	ENSMGAG00000010649	EXOSC9	59	36.364	Meleagris_gallopavo
YDR280W	-	83	36.508	ENSMAUG00000008629	Exosc9	98	36.400	Mesocricetus_auratus
YDR280W	-	95	34.483	ENSMICG00000006994	EXOSC9	63	34.483	Microcebus_murinus
YDR280W	-	95	35.172	ENSMOCG00000007209	Exosc9	63	35.172	Microtus_ochrogaster
YDR280W	-	83	38.095	ENSMMOG00000006666	exosc9	70	35.836	Mola_mola
YDR280W	-	95	34.828	ENSMODG00000018934	EXOSC9	63	34.828	Monodelphis_domestica
YDR280W	-	98	35.644	ENSMALG00000021891	exosc9	66	35.644	Monopterus_albus
YDR280W	-	95	34.828	MGP_CAROLIEiJ_G0024939	Exosc9	100	39.375	Mus_caroli
YDR280W	-	95	34.828	ENSMUSG00000027714	Exosc9	100	39.375	Mus_musculus
YDR280W	-	95	35.172	MGP_PahariEiJ_G0026379	Exosc9	100	40.000	Mus_pahari
YDR280W	-	95	34.828	MGP_SPRETEiJ_G0025873	Exosc9	100	39.375	Mus_spretus
YDR280W	-	95	34.483	ENSMPUG00000017410	EXOSC9	63	34.483	Mustela_putorius_furo
YDR280W	-	95	34.483	ENSMLUG00000005167	EXOSC9	63	34.483	Myotis_lucifugus
YDR280W	-	83	37.302	ENSNGAG00000022671	Exosc9	88	37.302	Nannospalax_galili
YDR280W	-	94	35.764	ENSNBRG00000019108	exosc9	70	32.986	Neolamprologus_brichardi
YDR280W	-	95	34.828	ENSNLEG00000009300	EXOSC9	63	34.828	Nomascus_leucogenys
YDR280W	-	95	32.759	ENSOPRG00000001158	EXOSC9	61	32.759	Ochotona_princeps
YDR280W	-	95	34.483	ENSODEG00000000589	EXOSC9	64	34.483	Octodon_degus
YDR280W	-	94	35.764	ENSONIG00000003399	exosc9	65	35.764	Oreochromis_niloticus
YDR280W	-	95	33.103	ENSOANG00000015114	EXOSC9	63	33.103	Ornithorhynchus_anatinus
YDR280W	-	95	34.828	ENSOCUG00000003046	EXOSC9	63	34.828	Oryctolagus_cuniculus
YDR280W	-	95	37.370	ENSORLG00000001989	exosc9	65	37.370	Oryzias_latipes
YDR280W	-	95	37.370	ENSORLG00020014069	exosc9	72	33.910	Oryzias_latipes_hni
YDR280W	-	95	37.024	ENSORLG00015013630	exosc9	65	37.024	Oryzias_latipes_hsok
YDR280W	-	94	37.500	ENSOMEG00000021965	exosc9	64	37.370	Oryzias_melastigma
YDR280W	-	95	34.483	ENSOGAG00000016104	EXOSC9	63	34.483	Otolemur_garnettii
YDR280W	-	95	34.483	ENSOARG00000014520	EXOSC9	63	34.483	Ovis_aries
YDR280W	-	95	34.483	ENSPPAG00000043865	EXOSC9	63	34.483	Pan_paniscus
YDR280W	-	95	34.828	ENSPPRG00000014689	-	63	34.828	Panthera_pardus
YDR280W	-	95	34.828	ENSPTIG00000010017	EXOSC9	63	34.828	Panthera_tigris_altaica
YDR280W	-	95	34.828	ENSPTRG00000044568	EXOSC9	63	34.828	Pan_troglodytes
YDR280W	-	95	34.828	ENSPANG00000000792	EXOSC9	63	34.828	Papio_anubis
YDR280W	-	93	35.211	ENSPKIG00000005890	exosc9	63	35.211	Paramormyrops_kingsleyae
YDR280W	-	78	34.874	ENSPSIG00000016020	EXOSC9	58	35.714	Pelodiscus_sinensis
YDR280W	-	95	36.678	ENSPMGG00000019387	exosc9	98	39.076	Periophthalmus_magnuspinnatus
YDR280W	-	95	34.828	ENSPEMG00000000544	Exosc9	63	34.828	Peromyscus_maniculatus_bairdii
YDR280W	-	78	35.294	ENSPMAG00000004877	exosc9	57	35.294	Petromyzon_marinus
YDR280W	-	95	34.828	ENSPCIG00000011193	EXOSC9	63	34.828	Phascolarctos_cinereus
YDR280W	-	95	36.332	ENSPFOG00000016008	exosc9	63	36.332	Poecilia_formosa
YDR280W	-	95	36.332	ENSPLAG00000016052	exosc9	64	36.332	Poecilia_latipinna
YDR280W	-	54	30.303	ENSPLAG00000016410	exosc7	60	30.303	Poecilia_latipinna
YDR280W	-	95	36.332	ENSPMEG00000023212	exosc9	71	32.990	Poecilia_mexicana
YDR280W	-	95	36.332	ENSPREG00000002069	exosc9	60	36.332	Poecilia_reticulata
YDR280W	-	95	34.828	ENSPPYG00000015037	EXOSC9	63	34.828	Pongo_abelii
YDR280W	-	95	34.483	ENSPCOG00000003962	EXOSC9	63	34.483	Propithecus_coquereli
YDR280W	-	95	35.517	ENSPNAG00000000578	exosc9	58	35.517	Pygocentrus_nattereri
YDR280W	-	95	34.828	ENSRNOG00000014674	Exosc9	65	34.828	Rattus_norvegicus
YDR280W	-	95	35.172	ENSRBIG00000030341	EXOSC9	63	35.172	Rhinopithecus_bieti
YDR280W	-	95	35.172	ENSRROG00000040804	EXOSC9	63	35.172	Rhinopithecus_roxellana
YDR280W	-	95	34.483	ENSSBOG00000020744	EXOSC9	63	34.483	Saimiri_boliviensis_boliviensis
YDR280W	-	95	34.483	ENSSHAG00000002000	EXOSC9	63	34.483	Sarcophilus_harrisii
YDR280W	-	95	35.294	ENSSFOG00015012903	exosc9	64	35.294	Scleropages_formosus
YDR280W	-	94	36.458	ENSSMAG00000012071	exosc9	64	36.458	Scophthalmus_maximus
YDR280W	-	87	30.147	ENSSMAG00000018819	exosc8	93	30.147	Scophthalmus_maximus
YDR280W	-	94	36.458	ENSSDUG00000002313	exosc9	65	36.458	Seriola_dumerili
YDR280W	-	94	36.458	ENSSLDG00000020591	exosc9	65	36.458	Seriola_lalandi_dorsalis
YDR280W	-	95	35.172	ENSSPUG00000010200	EXOSC9	65	35.172	Sphenodon_punctatus
YDR280W	-	94	36.806	ENSSPAG00000003892	exosc9	65	36.806	Stegastes_partitus
YDR280W	-	96	33.904	ENSSSCG00000009096	EXOSC9	63	34.483	Sus_scrofa
YDR280W	-	53	32.515	ENSTGUG00000015146	-	53	32.515	Taeniopygia_guttata
YDR280W	-	88	34.572	ENSTGUG00000001938	-	61	34.572	Taeniopygia_guttata
YDR280W	-	97	36.333	ENSTRUG00000004119	exosc9	71	36.333	Takifugu_rubripes
YDR280W	-	94	35.764	ENSTNIG00000004601	exosc9	69	35.764	Tetraodon_nigroviridis
YDR280W	-	83	36.508	ENSTTRG00000001584	EXOSC9	52	36.508	Tursiops_truncatus
YDR280W	-	63	35.079	ENSUAMG00000011140	EXOSC9	50	35.079	Ursus_americanus
YDR280W	-	95	34.483	ENSUMAG00000003848	EXOSC9	63	34.483	Ursus_maritimus
YDR280W	-	83	34.127	ENSVPAG00000012110	EXOSC9	52	34.127	Vicugna_pacos
YDR280W	-	60	30.481	ENSVPAG00000007287	EXOSC8	67	30.481	Vicugna_pacos
YDR280W	-	95	34.828	ENSVVUG00000013324	EXOSC9	63	34.828	Vulpes_vulpes
YDR280W	-	95	37.241	ENSXETG00000021118	exosc9	68	36.897	Xenopus_tropicalis
YDR280W	-	83	36.905	ENSXCOG00000011971	exosc9	98	37.500	Xiphophorus_couchianus
YDR280W	-	87	30.147	ENSXMAG00000008621	exosc8	93	30.147	Xiphophorus_maculatus
YDR280W	-	94	36.458	ENSXMAG00000017823	exosc9	67	35.294	Xiphophorus_maculatus