EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YDR293C (Gene tree)
Gene ID: -
Gene Symbol: SSD1
Alias: CLA1|MCS1|RLT1|SRK1
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 3753
Position: chrIV:1045640-1049392
Accession: S000002701
RBP type: canonical RBP
Summary: Translational repressor with a role in polar growth and wall integrity%3B regulated by Cbk1p phosphorylation to effect bud-specific translational control and localization of specific mRNAs%3B interacts with TOR pathway components%3B contains a functional N-terminal nuclear localization sequence and nucleocytoplasmic shuttling appears to be critical to Ssd1p function

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDR293C_mRNA	RNB	PF00773.19	6.1e-65	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl.PAR_CL & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDR293C_mRNA	-	3753	-	YDR293C_mRNA	1250 (aa)	-	P24276

Gene Model

Click here to download YDR293C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YDR293C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDR293C	SSD1	53	35.000	ENSG00000166938	DIS3L	69	41.333	Homo_sapiens
YDR293C	SSD1	51	33.673	ENSAOCG00000013852	dis3l2	58	37.805	Amphiprion_ocellaris
YDR293C	SSD1	50	39.024	ENSAPEG00000022654	dis3l2	58	39.024	Amphiprion_percula
YDR293C	SSD1	52	37.500	ENSAMXG00000006220	dis3l	61	42.667	Astyanax_mexicanus
YDR293C	SSD1	54	34.884	ENSBTAG00000019889	DIS3	69	35.366	Bos_taurus
YDR293C	SSD1	54	33.721	ENSCJAG00000021117	DIS3	71	34.146	Callithrix_jacchus
YDR293C	SSD1	54	34.884	ENSCAFG00000005016	DIS3	69	35.366	Canis_familiaris
YDR293C	SSD1	54	34.884	ENSCAFG00020025806	DIS3	73	35.366	Canis_lupus_dingo
YDR293C	SSD1	52	36.000	ENSCAFG00020008413	DIS3L	61	42.667	Canis_lupus_dingo
YDR293C	SSD1	52	44.000	ENSCAPG00000016431	DIS3L	65	44.000	Cavia_aperea
YDR293C	SSD1	52	44.000	ENSCPOG00000000250	DIS3L	64	44.000	Cavia_porcellus
YDR293C	SSD1	54	33.721	ENSCCAG00000029240	DIS3	83	34.146	Cebus_capucinus
YDR293C	SSD1	50	42.667	ENSCCAG00000037964	DIS3L	61	42.667	Cebus_capucinus
YDR293C	SSD1	53	35.354	ENSCATG00000044661	DIS3L	64	41.892	Cercocebus_atys
YDR293C	SSD1	50	38.000	ENSCLAG00000005741	DIS3L	67	43.750	Chinchilla_lanigera
YDR293C	SSD1	53	35.000	ENSCSAG00000013140	DIS3L	69	41.333	Chlorocebus_sabaeus
YDR293C	SSD1	50	42.667	ENSCPBG00000014111	DIS3L	62	42.667	Chrysemys_picta_bellii
YDR293C	SSD1	50	42.857	ENSCING00000003927	-	86	42.857	Ciona_intestinalis
YDR293C	SSD1	53	35.000	ENSCANG00000041576	DIS3L	65	41.333	Colobus_angolensis_palliatus
YDR293C	SSD1	50	41.333	ENSCGRG00001017825	Dis3l	61	41.333	Cricetulus_griseus_chok1gshd
YDR293C	SSD1	50	41.333	ENSCGRG00000017247	Dis3l	61	41.333	Cricetulus_griseus_crigri
YDR293C	SSD1	53	38.889	ENSDARG00000033259	dis3l2	69	38.889	Danio_rerio
YDR293C	SSD1	56	33.663	ENSDARG00000053200	dis3l	67	35.632	Danio_rerio
YDR293C	SSD1	50	42.667	ENSDNOG00000016967	DIS3L	61	42.667	Dasypus_novemcinctus
YDR293C	SSD1	50	41.558	ENSEBUG00000016190	dis3l	65	41.558	Eptatretus_burgeri
YDR293C	SSD1	53	33.028	ENSEASG00005006407	DIS3L	62	35.870	Equus_asinus_asinus
YDR293C	SSD1	53	33.028	ENSECAG00000007302	DIS3L	63	35.870	Equus_caballus
YDR293C	SSD1	51	38.095	ENSFALG00000010033	DIS3L	62	39.024	Ficedula_albicollis
YDR293C	SSD1	53	33.721	ENSFDAG00000016444	DIS3	71	34.146	Fukomys_damarensis
YDR293C	SSD1	50	36.000	ENSFDAG00000008259	DIS3L	60	44.000	Fukomys_damarensis
YDR293C	SSD1	51	41.573	ENSGAGG00000004493	DIS3L	67	42.105	Gopherus_agassizii
YDR293C	SSD1	51	36.957	ENSGAGG00000000602	DIS3	65	37.500	Gopherus_agassizii
YDR293C	SSD1	53	35.000	ENSGGOG00000001549	DIS3L	65	41.333	Gorilla_gorilla
YDR293C	SSD1	52	42.667	ENSHGLG00000007770	DIS3L	61	42.667	Heterocephalus_glaber_female
YDR293C	SSD1	52	42.667	ENSHGLG00100011280	DIS3L	64	42.667	Heterocephalus_glaber_male
YDR293C	SSD1	50	40.000	ENSHCOG00000000183	dis3l	62	40.000	Hippocampus_comes
YDR293C	SSD1	50	32.381	ENSIPUG00000005868	dis3l2	66	37.349	Ictalurus_punctatus
YDR293C	SSD1	52	35.000	ENSSTOG00000009158	DIS3L	64	41.333	Ictidomys_tridecemlineatus
YDR293C	SSD1	53	33.721	ENSJJAG00000011607	Dis3	66	34.146	Jaculus_jaculus
YDR293C	SSD1	50	40.000	ENSKMAG00000014185	dis3l	65	40.000	Kryptolebias_marmoratus
YDR293C	SSD1	50	39.130	ENSLOCG00000004804	dis3l2	64	38.889	Lepisosteus_oculatus
YDR293C	SSD1	53	34.862	ENSLAFG00000006866	DIS3L	64	38.043	Loxodonta_africana
YDR293C	SSD1	53	35.000	ENSMFAG00000035628	DIS3L	64	41.333	Macaca_fascicularis
YDR293C	SSD1	53	35.000	ENSMMUG00000003693	DIS3L	69	41.333	Macaca_mulatta
YDR293C	SSD1	53	35.000	ENSMNEG00000035066	DIS3L	63	41.333	Macaca_nemestrina
YDR293C	SSD1	53	35.000	ENSMLEG00000034558	DIS3L	67	41.333	Mandrillus_leucophaeus
YDR293C	SSD1	54	35.577	ENSMAMG00000017229	dis3l	65	38.750	Mastacembelus_armatus
YDR293C	SSD1	54	35.000	ENSMAUG00000008265	Dis3l	64	41.333	Mesocricetus_auratus
YDR293C	SSD1	50	41.333	ENSMOCG00000005278	Dis3l	61	41.333	Microtus_ochrogaster
YDR293C	SSD1	52	39.241	ENSMMOG00000008377	dis3l	64	39.241	Mola_mola
YDR293C	SSD1	51	35.443	ENSMALG00000004604	dis3l2	80	35.443	Monopterus_albus
YDR293C	SSD1	52	42.667	MGP_CAROLIEiJ_G0032344	Dis3l	67	42.667	Mus_caroli
YDR293C	SSD1	52	41.333	ENSMUSG00000032396	Dis3l	69	41.333	Mus_musculus
YDR293C	SSD1	50	42.667	MGP_PahariEiJ_G0015209	Dis3l	67	42.667	Mus_pahari
YDR293C	SSD1	52	41.333	MGP_SPRETEiJ_G0033483	Dis3l	69	41.333	Mus_spretus
YDR293C	SSD1	54	36.047	ENSMPUG00000010253	DIS3	69	36.585	Mustela_putorius_furo
YDR293C	SSD1	52	33.000	ENSMPUG00000000378	DIS3L	61	38.667	Mustela_putorius_furo
YDR293C	SSD1	52	35.000	ENSMLUG00000008589	-	68	41.333	Myotis_lucifugus
YDR293C	SSD1	54	34.884	ENSMLUG00000000553	DIS3	69	35.366	Myotis_lucifugus
YDR293C	SSD1	50	41.333	ENSNGAG00000017008	Dis3l	61	41.333	Nannospalax_galili
YDR293C	SSD1	53	35.000	ENSNLEG00000012891	DIS3L	64	41.333	Nomascus_leucogenys
YDR293C	SSD1	52	42.254	ENSORLG00000018364	dis3l	67	40.000	Oryzias_latipes
YDR293C	SSD1	53	35.000	ENSOGAG00000024086	DIS3L	64	41.333	Otolemur_garnettii
YDR293C	SSD1	53	35.000	ENSPPAG00000019888	DIS3L	67	41.333	Pan_paniscus
YDR293C	SSD1	52	42.667	ENSPPRG00000019912	DIS3L	64	42.667	Panthera_pardus
YDR293C	SSD1	52	42.667	ENSPTIG00000009042	DIS3L	69	42.667	Panthera_tigris_altaica
YDR293C	SSD1	53	35.000	ENSPTRG00000007191	DIS3L	69	41.333	Pan_troglodytes
YDR293C	SSD1	53	35.000	ENSPANG00000016671	DIS3L	64	41.333	Papio_anubis
YDR293C	SSD1	51	39.286	ENSPSIG00000011629	DIS3L	64	42.105	Pelodiscus_sinensis
YDR293C	SSD1	51	40.000	ENSPMGG00000013765	dis3l	63	38.750	Periophthalmus_magnuspinnatus
YDR293C	SSD1	52	35.345	ENSPMGG00000020250	dis3l2	87	38.554	Periophthalmus_magnuspinnatus
YDR293C	SSD1	53	42.500	ENSPFOG00000017504	dis3l	65	42.500	Poecilia_formosa
YDR293C	SSD1	51	36.047	ENSPLAG00000021123	dis3l2	81	36.585	Poecilia_latipinna
YDR293C	SSD1	51	42.500	ENSPMEG00000008867	dis3l	64	42.500	Poecilia_mexicana
YDR293C	SSD1	52	35.165	ENSPREG00000002432	dis3l2	77	36.145	Poecilia_reticulata
YDR293C	SSD1	52	34.706	ENSPPYG00000013274	DIS3L2	54	34.706	Pongo_abelii
YDR293C	SSD1	53	35.000	ENSPPYG00000006575	DIS3L	64	41.333	Pongo_abelii
YDR293C	SSD1	51	40.000	ENSPNAG00000014400	dis3l	62	40.000	Pygocentrus_nattereri
YDR293C	SSD1	50	42.667	ENSRNOG00000010537	Dis3l	61	42.667	Rattus_norvegicus
YDR293C	SSD1	53	35.000	ENSRBIG00000029360	DIS3L	70	41.333	Rhinopithecus_bieti
YDR293C	SSD1	53	35.000	ENSRROG00000038323	DIS3L	64	41.333	Rhinopithecus_roxellana
YDR293C	SSD1	54	33.721	ENSSBOG00000028346	DIS3	83	34.146	Saimiri_boliviensis_boliviensis
YDR293C	SSD1	55	39.241	ENSSFOG00015024038	dis3l	64	39.241	Scleropages_formosus
YDR293C	SSD1	54	44.000	ENSSPUG00000013652	DIS3L	72	44.000	Sphenodon_punctatus
YDR293C	SSD1	51	38.000	ENSSPAG00000021224	dis3l2	78	39.024	Stegastes_partitus
YDR293C	SSD1	56	30.612	ENSSSCG00000022177	DIS3L2	52	30.612	Sus_scrofa
YDR293C	SSD1	52	36.000	ENSSSCG00000004941	DIS3L	64	41.333	Sus_scrofa
YDR293C	SSD1	54	44.262	ENSTNIG00000004764	dis3l	73	36.709	Tetraodon_nigroviridis
YDR293C	SSD1	54	40.860	ENSTTRG00000009186	DIS3L2	83	46.667	Tursiops_truncatus
YDR293C	SSD1	54	37.209	ENSUAMG00000027931	DIS3	71	37.805	Ursus_americanus
YDR293C	SSD1	54	37.209	ENSUMAG00000009496	DIS3	73	37.805	Ursus_maritimus
YDR293C	SSD1	52	36.000	ENSUMAG00000012227	DIS3L	64	42.667	Ursus_maritimus
YDR293C	SSD1	54	36.047	ENSVVUG00000018095	DIS3	69	36.585	Vulpes_vulpes
YDR293C	SSD1	52	44.000	ENSXMAG00000013661	dis3l	76	44.000	Xiphophorus_maculatus