EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YDR378C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Lsm (Like Sm) protein%3B part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay%3B nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA%2C snoRNA%2C and rRNA
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 261 bases
Position: chrIV:1229349-1229609
Accession: S000002786
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDR378C_mRNA	LSM	PF01423.22	2.9e-18	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	MS & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDR378C_mRNA	-	261	-	YDR378C_mRNA	86 (aa)	-	Q06406

Gene Model

Click here to download YDR378C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YDR378C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDR378C	-	93	45.000	ENSG00000164167	LSM6	95	41.250	Homo_sapiens
YDR378C	-	93	45.000	ENSAPOG00000019832	lsm6	95	41.250	Acanthochromis_polyacanthus
YDR378C	-	93	45.000	ENSAMEG00000016671	LSM6	95	41.250	Ailuropoda_melanoleuca
YDR378C	-	93	45.000	ENSACIG00000016711	lsm6	95	41.250	Amphilophus_citrinellus
YDR378C	-	95	45.122	ENSAOCG00000002110	lsm6	50	43.902	Amphiprion_ocellaris
YDR378C	-	93	45.000	ENSAPEG00000023992	lsm6	95	41.250	Amphiprion_percula
YDR378C	-	93	45.000	ENSATEG00000012610	lsm6	95	41.250	Anabas_testudineus
YDR378C	-	86	47.297	ENSAPLG00000012594	LSM6	90	43.243	Anas_platyrhynchos
YDR378C	-	93	45.000	ENSACAG00000004004	LSM6	95	41.250	Anolis_carolinensis
YDR378C	-	93	45.000	ENSANAG00000030568	-	95	41.250	Aotus_nancymaae
YDR378C	-	85	38.356	ENSANAG00000021839	-	57	44.186	Aotus_nancymaae
YDR378C	-	93	45.000	ENSACLG00000025621	lsm6	95	41.250	Astatotilapia_calliptera
YDR378C	-	95	45.122	ENSAMXG00000038738	lsm6	95	41.250	Astyanax_mexicanus
YDR378C	-	93	45.000	ENSBTAG00000014060	LSM6	95	41.250	Bos_taurus
YDR378C	-	86	41.892	ENSBTAG00000052085	-	88	39.189	Bos_taurus
YDR378C	-	83	47.887	WBGene00003080	lsm-6	87	46.479	Caenorhabditis_elegans
YDR378C	-	93	45.000	ENSCJAG00000002482	LSM6	95	41.250	Callithrix_jacchus
YDR378C	-	93	45.000	ENSCAFG00000007738	LSM6	95	41.250	Canis_familiaris
YDR378C	-	93	45.000	ENSCAFG00020025902	LSM6	95	41.250	Canis_lupus_dingo
YDR378C	-	99	40.000	ENSCHIG00000024198	-	92	37.805	Capra_hircus
YDR378C	-	93	45.000	ENSCHIG00000010334	-	95	41.250	Capra_hircus
YDR378C	-	86	41.892	ENSCHIG00000012864	-	99	37.838	Capra_hircus
YDR378C	-	86	37.838	ENSTSYG00000012759	-	92	36.486	Carlito_syrichta
YDR378C	-	93	45.000	ENSTSYG00000026972	LSM6	95	41.250	Carlito_syrichta
YDR378C	-	72	45.161	ENSCAPG00000011179	-	77	47.059	Cavia_aperea
YDR378C	-	93	45.000	ENSCAPG00000008104	LSM6	95	41.250	Cavia_aperea
YDR378C	-	93	45.000	ENSCPOG00000032655	LSM6	95	41.250	Cavia_porcellus
YDR378C	-	93	45.000	ENSCCAG00000036437	LSM6	95	41.250	Cebus_capucinus
YDR378C	-	83	49.296	ENSCCAG00000020665	-	84	45.070	Cebus_capucinus
YDR378C	-	93	45.000	ENSCATG00000002770	-	95	41.250	Cercocebus_atys
YDR378C	-	93	45.000	ENSCLAG00000005495	LSM6	95	41.250	Chinchilla_lanigera
YDR378C	-	79	32.353	ENSCLAG00000005685	-	63	40.909	Chinchilla_lanigera
YDR378C	-	93	45.000	ENSCSAG00000003421	LSM6	95	41.250	Chlorocebus_sabaeus
YDR378C	-	58	44.000	ENSCHOG00000003420	LSM6	79	44.000	Choloepus_hoffmanni
YDR378C	-	93	45.000	ENSCPBG00000027472	LSM6	80	43.750	Chrysemys_picta_bellii
YDR378C	-	86	48.649	ENSCING00000019152	-	85	44.595	Ciona_intestinalis
YDR378C	-	86	47.297	ENSCSAVG00000002065	-	85	43.243	Ciona_savignyi
YDR378C	-	93	45.000	ENSCANG00000006849	-	95	41.250	Colobus_angolensis_palliatus
YDR378C	-	93	45.000	ENSCANG00000041263	-	95	41.250	Colobus_angolensis_palliatus
YDR378C	-	93	45.000	ENSCGRG00001017142	Lsm6	95	41.250	Cricetulus_griseus_chok1gshd
YDR378C	-	93	45.000	ENSCGRG00000008320	Lsm6	95	41.250	Cricetulus_griseus_crigri
YDR378C	-	93	45.000	ENSCSEG00000000423	lsm6	95	41.250	Cynoglossus_semilaevis
YDR378C	-	93	45.000	ENSCVAG00000001592	lsm6	95	41.250	Cyprinodon_variegatus
YDR378C	-	93	45.000	ENSDARG00000036995	lsm6	95	41.250	Danio_rerio
YDR378C	-	93	43.750	ENSDNOG00000044848	-	95	40.000	Dasypus_novemcinctus
YDR378C	-	81	42.857	ENSDNOG00000040186	-	72	38.028	Dasypus_novemcinctus
YDR378C	-	93	45.000	ENSDORG00000000933	Lsm6	95	41.250	Dipodomys_ordii
YDR378C	-	85	42.466	FBgn0034564	CG9344	87	38.356	Drosophila_melanogaster
YDR378C	-	93	45.000	ENSEBUG00000017073	lsm6	95	41.250	Eptatretus_burgeri
YDR378C	-	81	42.857	ENSEASG00005001533	LSM6	70	40.845	Equus_asinus_asinus
YDR378C	-	93	45.000	ENSECAG00000021036	LSM6	95	41.250	Equus_caballus
YDR378C	-	97	44.578	ENSELUG00000014301	LSM6	95	41.250	Esox_lucius
YDR378C	-	93	45.000	ENSFCAG00000003047	LSM6	95	41.250	Felis_catus
YDR378C	-	95	45.122	ENSFALG00000005509	LSM6	90	41.463	Ficedula_albicollis
YDR378C	-	93	45.000	ENSFDAG00000020913	-	95	41.250	Fukomys_damarensis
YDR378C	-	93	42.500	ENSFDAG00000019073	-	95	38.750	Fukomys_damarensis
YDR378C	-	93	45.000	ENSFHEG00000007948	lsm6	95	41.250	Fundulus_heteroclitus
YDR378C	-	93	45.000	ENSGMOG00000015550	lsm6	95	41.250	Gadus_morhua
YDR378C	-	93	45.000	ENSGALG00000009985	LSM6	95	41.250	Gallus_gallus
YDR378C	-	93	45.000	ENSGAFG00000017763	lsm6	95	41.250	Gambusia_affinis
YDR378C	-	93	45.000	ENSGACG00000017223	lsm6	95	41.250	Gasterosteus_aculeatus
YDR378C	-	93	45.000	ENSGAGG00000020980	LSM6	95	41.250	Gopherus_agassizii
YDR378C	-	93	45.000	ENSGGOG00000001310	LSM6	95	41.250	Gorilla_gorilla
YDR378C	-	93	45.000	ENSHBUG00000008618	lsm6	95	41.250	Haplochromis_burtoni
YDR378C	-	93	45.000	ENSHGLG00000000205	LSM6	95	41.250	Heterocephalus_glaber_female
YDR378C	-	93	45.000	ENSHGLG00100014341	LSM6	95	41.250	Heterocephalus_glaber_male
YDR378C	-	93	45.000	ENSHCOG00000005591	lsm6	95	41.250	Hippocampus_comes
YDR378C	-	93	45.000	ENSIPUG00000004508	lsm6	95	41.250	Ictalurus_punctatus
YDR378C	-	93	45.000	ENSSTOG00000002678	LSM6	95	41.250	Ictidomys_tridecemlineatus
YDR378C	-	86	44.595	ENSJJAG00000011211	-	88	39.189	Jaculus_jaculus
YDR378C	-	86	40.541	ENSJJAG00000016942	-	88	39.189	Jaculus_jaculus
YDR378C	-	93	45.000	ENSJJAG00000013845	-	95	41.250	Jaculus_jaculus
YDR378C	-	93	45.000	ENSKMAG00000004105	lsm6	95	41.250	Kryptolebias_marmoratus
YDR378C	-	93	45.000	ENSLBEG00000018441	lsm6	95	41.250	Labrus_bergylta
YDR378C	-	93	45.000	ENSLACG00000006937	LSM6	95	41.250	Latimeria_chalumnae
YDR378C	-	93	45.000	ENSLOCG00000008852	lsm6	95	41.250	Lepisosteus_oculatus
YDR378C	-	93	43.750	ENSLOCG00000017683	-	95	40.000	Lepisosteus_oculatus
YDR378C	-	93	45.000	ENSLAFG00000001952	LSM6	95	41.250	Loxodonta_africana
YDR378C	-	93	45.000	ENSMFAG00000033073	LSM6	95	41.250	Macaca_fascicularis
YDR378C	-	93	45.000	ENSMNEG00000034820	-	95	41.250	Macaca_nemestrina
YDR378C	-	93	45.000	ENSMLEG00000035153	LSM6	95	41.250	Mandrillus_leucophaeus
YDR378C	-	93	45.000	ENSMAMG00000014029	lsm6	95	41.250	Mastacembelus_armatus
YDR378C	-	93	45.000	ENSMZEG00005009146	lsm6	95	41.250	Maylandia_zebra
YDR378C	-	93	45.000	ENSMGAG00000003802	LSM6	95	41.250	Meleagris_gallopavo
YDR378C	-	93	45.000	ENSMAUG00000014938	Lsm6	95	41.250	Mesocricetus_auratus
YDR378C	-	93	45.000	ENSMICG00000042599	LSM6	95	41.250	Microcebus_murinus
YDR378C	-	93	38.750	ENSMICG00000047411	-	89	35.000	Microcebus_murinus
YDR378C	-	93	45.000	ENSMOCG00000020049	Lsm6	95	41.250	Microtus_ochrogaster
YDR378C	-	93	38.750	ENSMMOG00000007379	-	96	38.750	Mola_mola
YDR378C	-	93	45.000	ENSMMOG00000005470	lsm6	95	41.250	Mola_mola
YDR378C	-	93	45.000	ENSMODG00000000526	LSM6	95	41.250	Monodelphis_domestica
YDR378C	-	93	45.000	ENSMALG00000002419	lsm6	95	41.250	Monopterus_albus
YDR378C	-	93	45.000	MGP_CAROLIEiJ_G0031245	Lsm6	95	41.250	Mus_caroli
YDR378C	-	93	45.000	ENSMUSG00000031683	Lsm6	95	41.250	Mus_musculus
YDR378C	-	93	45.000	MGP_PahariEiJ_G0022851	Lsm6	95	41.250	Mus_pahari
YDR378C	-	93	45.000	MGP_SPRETEiJ_G0032365	Lsm6	95	41.250	Mus_spretus
YDR378C	-	95	45.122	ENSMPUG00000006936	LSM6	91	41.463	Mustela_putorius_furo
YDR378C	-	93	45.000	ENSMLUG00000026355	LSM6	95	41.250	Myotis_lucifugus
YDR378C	-	93	45.000	ENSNGAG00000019116	Lsm6	95	41.250	Nannospalax_galili
YDR378C	-	93	45.000	ENSNBRG00000004887	lsm6	95	41.250	Neolamprologus_brichardi
YDR378C	-	93	45.000	ENSNLEG00000005584	LSM6	95	41.250	Nomascus_leucogenys
YDR378C	-	93	45.000	ENSOPRG00000011199	LSM6	95	41.250	Ochotona_princeps
YDR378C	-	93	43.750	ENSODEG00000020420	-	95	40.000	Octodon_degus
YDR378C	-	93	38.750	ENSODEG00000018684	-	99	38.750	Octodon_degus
YDR378C	-	93	45.000	ENSODEG00000002307	-	95	41.250	Octodon_degus
YDR378C	-	92	44.304	ENSODEG00000019419	-	94	40.506	Octodon_degus
YDR378C	-	93	45.000	ENSONIG00000010005	lsm6	95	41.250	Oreochromis_niloticus
YDR378C	-	70	43.333	ENSOANG00000006895	-	74	41.667	Ornithorhynchus_anatinus
YDR378C	-	70	45.000	ENSOANG00000006894	-	74	43.333	Ornithorhynchus_anatinus
YDR378C	-	93	45.000	ENSORLG00000024158	lsm6	95	41.250	Oryzias_latipes
YDR378C	-	93	45.000	ENSORLG00020017383	lsm6	95	41.250	Oryzias_latipes_hni
YDR378C	-	93	45.000	ENSORLG00015016903	lsm6	95	41.250	Oryzias_latipes_hsok
YDR378C	-	93	45.000	ENSOMEG00000000074	lsm6	95	41.250	Oryzias_melastigma
YDR378C	-	93	45.000	ENSOGAG00000033153	-	95	41.250	Otolemur_garnettii
YDR378C	-	93	45.000	ENSOGAG00000026665	-	95	41.250	Otolemur_garnettii
YDR378C	-	81	42.857	ENSOARG00000008509	-	86	40.845	Ovis_aries
YDR378C	-	99	44.706	ENSOARG00000011641	-	94	41.176	Ovis_aries
YDR378C	-	93	45.000	ENSPPAG00000037929	LSM6	95	41.250	Pan_paniscus
YDR378C	-	93	45.000	ENSPPRG00000012806	LSM6	95	41.250	Panthera_pardus
YDR378C	-	93	45.000	ENSPTIG00000019769	LSM6	95	41.250	Panthera_tigris_altaica
YDR378C	-	93	45.000	ENSPTRG00000016488	LSM6	95	41.250	Pan_troglodytes
YDR378C	-	93	45.000	ENSPANG00000006552	LSM6	95	41.250	Papio_anubis
YDR378C	-	93	45.000	ENSPKIG00000016176	lsm6	95	41.250	Paramormyrops_kingsleyae
YDR378C	-	93	45.000	ENSPSIG00000016942	LSM6	95	41.250	Pelodiscus_sinensis
YDR378C	-	93	45.000	ENSPMGG00000018004	lsm6	95	41.250	Periophthalmus_magnuspinnatus
YDR378C	-	93	45.000	ENSPEMG00000012410	Lsm6	95	41.250	Peromyscus_maniculatus_bairdii
YDR378C	-	93	45.000	ENSPMAG00000006949	lsm6	95	41.250	Petromyzon_marinus
YDR378C	-	93	45.000	ENSPCIG00000023469	LSM6	79	37.500	Phascolarctos_cinereus
YDR378C	-	93	45.000	ENSPFOG00000008881	lsm6	95	41.250	Poecilia_formosa
YDR378C	-	93	45.000	ENSPLAG00000003202	lsm6	95	41.250	Poecilia_latipinna
YDR378C	-	93	45.000	ENSPMEG00000004000	lsm6	95	41.250	Poecilia_mexicana
YDR378C	-	93	45.000	ENSPREG00000023235	lsm6	95	41.250	Poecilia_reticulata
YDR378C	-	93	45.000	ENSPPYG00000015105	LSM6	95	41.250	Pongo_abelii
YDR378C	-	93	45.000	ENSPCOG00000013899	LSM6	95	41.250	Propithecus_coquereli
YDR378C	-	93	45.000	ENSPNYG00000012614	lsm6	95	41.250	Pundamilia_nyererei
YDR378C	-	93	45.000	ENSPNAG00000018779	lsm6	95	41.250	Pygocentrus_nattereri
YDR378C	-	93	45.000	ENSRNOG00000030374	Lsm6	95	41.250	Rattus_norvegicus
YDR378C	-	93	45.000	ENSRNOG00000049370	LOC100360750	95	41.250	Rattus_norvegicus
YDR378C	-	93	45.000	ENSRBIG00000027878	LSM6	95	41.250	Rhinopithecus_bieti
YDR378C	-	93	45.000	ENSRROG00000024868	LSM6	95	41.250	Rhinopithecus_roxellana
YDR378C	-	93	45.000	ENSSBOG00000021229	-	95	41.250	Saimiri_boliviensis_boliviensis
YDR378C	-	93	45.000	ENSSFOG00015016480	lsm6	95	41.250	Scleropages_formosus
YDR378C	-	93	45.000	ENSSMAG00000004550	lsm6	95	41.250	Scophthalmus_maximus
YDR378C	-	74	45.312	ENSSLDG00000004136	-	59	40.278	Seriola_lalandi_dorsalis
YDR378C	-	95	45.122	ENSSLDG00000020533	lsm6	81	41.463	Seriola_lalandi_dorsalis
YDR378C	-	93	45.000	ENSSPUG00000008657	LSM6	95	41.250	Sphenodon_punctatus
YDR378C	-	93	45.000	ENSSPAG00000003246	lsm6	95	41.250	Stegastes_partitus
YDR378C	-	93	45.000	ENSSSCG00000035973	LSM6	95	41.250	Sus_scrofa
YDR378C	-	93	45.000	ENSTGUG00000002663	LSM6	95	41.250	Taeniopygia_guttata
YDR378C	-	93	45.000	ENSTRUG00000023398	lsm6	95	41.250	Takifugu_rubripes
YDR378C	-	93	45.000	ENSTNIG00000017725	lsm6	95	41.250	Tetraodon_nigroviridis
YDR378C	-	93	45.000	ENSTTRG00000004609	LSM6	95	41.250	Tursiops_truncatus
YDR378C	-	81	42.857	ENSUAMG00000014213	LSM6	55	40.845	Ursus_americanus
YDR378C	-	81	42.857	ENSUMAG00000015727	LSM6	55	40.845	Ursus_maritimus
YDR378C	-	93	45.000	ENSVPAG00000006922	LSM6	95	41.250	Vicugna_pacos
YDR378C	-	95	45.122	ENSVVUG00000009254	LSM6	67	41.463	Vulpes_vulpes
YDR378C	-	93	45.000	ENSXETG00000023683	lsm6	95	41.250	Xenopus_tropicalis
YDR378C	-	93	45.000	ENSXMAG00000009606	lsm6	95	41.250	Xiphophorus_maculatus