EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YDR404C (Gene tree)
Gene ID: -
Gene Symbol: RPB7
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: putative
Strand: Minus strand
Length: 516
Position: chrIV:1276654-1277169
Accession: S000002812
RBP type: canonical RBP
Summary: RNA polymerase II subunit B16%3B forms dissociable heterodimer with Rpb4p%3B Rpb4/7 dissociates from RNAPII as Ser2 CTD phosphorylation increases%3B Rpb4/7 regulates cellular lifespan via mRNA decay process%3B involved in recruitment of 3'-end processing factors to transcribing RNA polymerase II complex%2C export of mRNA to cytoplasm under stress conditions%3B also involved in translation initiation

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDR404C_mRNA	RNA_pol_Rbc25	PF08292.12	2.5e-06	1	1
YDR404C_mRNA	S1	PF00575.23	1.7e-18	1	1
YDR404C_mRNA	SHS2_Rpb7-N	PF03876.17	4.5e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDR404C_mRNA	-	516	-	YDR404C_mRNA	171 (aa)	-	P34087

Gene Model

Click here to download YDR404C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YDR404C's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDR404C	RPB7	100	42.775	ENSG00000168002	POLR2G	100	51.220	Homo_sapiens
YDR404C	RPB7	95	43.636	ENSAPOG00000010949	polr2gl	95	43.636	Acanthochromis_polyacanthus
YDR404C	RPB7	100	42.775	ENSAMEG00000006386	POLR2G	99	42.775	Ailuropoda_melanoleuca
YDR404C	RPB7	95	43.636	ENSACIG00000007252	polr2gl	84	43.636	Amphilophus_citrinellus
YDR404C	RPB7	100	42.775	ENSAOCG00000013628	polr2gl	99	42.775	Amphiprion_ocellaris
YDR404C	RPB7	100	42.775	ENSAPEG00000011229	polr2gl	99	42.775	Amphiprion_percula
YDR404C	RPB7	100	42.775	ENSATEG00000013382	polr2gl	99	42.775	Anabas_testudineus
YDR404C	RPB7	96	42.771	ENSACAG00000001005	POLR2G	95	42.771	Anolis_carolinensis
YDR404C	RPB7	100	42.775	ENSANAG00000037428	POLR2G	99	42.775	Aotus_nancymaae
YDR404C	RPB7	100	42.775	ENSACLG00000014753	polr2gl	99	42.775	Astatotilapia_calliptera
YDR404C	RPB7	100	42.775	ENSAMXG00000030439	polr2gl	99	42.775	Astyanax_mexicanus
YDR404C	RPB7	100	42.775	ENSBTAG00000009483	POLR2G	99	42.775	Bos_taurus
YDR404C	RPB7	99	39.181	WBGene00021845	rpb-7	86	39.181	Caenorhabditis_elegans
YDR404C	RPB7	100	42.775	ENSCJAG00000018688	POLR2G	99	42.775	Callithrix_jacchus
YDR404C	RPB7	56	46.875	ENSCAFG00000015461	POLR2G	80	46.875	Canis_familiaris
YDR404C	RPB7	100	42.775	ENSCAFG00020013136	POLR2G	99	42.775	Canis_lupus_dingo
YDR404C	RPB7	99	43.275	ENSCHIG00000023730	POLR2G	89	43.275	Capra_hircus
YDR404C	RPB7	100	42.775	ENSTSYG00000011918	POLR2G	99	42.775	Carlito_syrichta
YDR404C	RPB7	76	40.152	ENSCAPG00000017572	POLR2G	99	40.152	Cavia_aperea
YDR404C	RPB7	100	42.775	ENSCPOG00000036420	POLR2G	99	42.775	Cavia_porcellus
YDR404C	RPB7	100	38.728	ENSCCAG00000033483	-	94	38.728	Cebus_capucinus
YDR404C	RPB7	100	42.775	ENSCATG00000034443	POLR2G	99	42.775	Cercocebus_atys
YDR404C	RPB7	100	42.775	ENSCLAG00000000802	POLR2G	99	42.775	Chinchilla_lanigera
YDR404C	RPB7	100	42.775	ENSCSAG00000006715	POLR2G	99	42.775	Chlorocebus_sabaeus
YDR404C	RPB7	79	42.963	ENSCHOG00000009928	POLR2G	100	42.963	Choloepus_hoffmanni
YDR404C	RPB7	100	42.775	ENSCPBG00000017972	POLR2G	99	42.775	Chrysemys_picta_bellii
YDR404C	RPB7	100	42.197	ENSCING00000004991	-	99	42.197	Ciona_intestinalis
YDR404C	RPB7	100	42.775	ENSCSAVG00000002667	-	99	42.775	Ciona_savignyi
YDR404C	RPB7	100	42.775	ENSCANG00000043203	POLR2G	99	42.775	Colobus_angolensis_palliatus
YDR404C	RPB7	100	42.775	ENSCGRG00001022692	-	99	42.775	Cricetulus_griseus_chok1gshd
YDR404C	RPB7	100	41.040	ENSCGRG00001011370	-	99	41.040	Cricetulus_griseus_chok1gshd
YDR404C	RPB7	100	42.775	ENSCGRG00000015350	Polr2g	99	42.775	Cricetulus_griseus_crigri
YDR404C	RPB7	98	42.941	ENSCSEG00000011991	polr2gl	90	42.941	Cynoglossus_semilaevis
YDR404C	RPB7	100	42.775	ENSCVAG00000021090	polr2gl	99	42.775	Cyprinodon_variegatus
YDR404C	RPB7	100	42.197	ENSDARG00000056127	polr2gl	99	42.197	Danio_rerio
YDR404C	RPB7	100	42.775	ENSDNOG00000043426	POLR2G	99	42.775	Dasypus_novemcinctus
YDR404C	RPB7	100	41.618	ENSDORG00000010351	-	99	41.618	Dipodomys_ordii
YDR404C	RPB7	100	41.040	FBgn0051155	Rpb7	99	41.040	Drosophila_melanogaster
YDR404C	RPB7	100	32.948	ENSETEG00000019637	POLR2G	99	32.948	Echinops_telfairi
YDR404C	RPB7	100	42.614	ENSEBUG00000000439	-	85	42.614	Eptatretus_burgeri
YDR404C	RPB7	100	42.775	ENSEASG00005011357	POLR2G	99	42.775	Equus_asinus_asinus
YDR404C	RPB7	99	43.275	ENSECAG00000021465	POLR2G	87	43.275	Equus_caballus
YDR404C	RPB7	67	50.000	ENSEEUG00000007416	POLR2G	67	50.000	Erinaceus_europaeus
YDR404C	RPB7	100	42.775	ENSELUG00000003401	polr2g	99	42.775	Esox_lucius
YDR404C	RPB7	100	42.775	ENSFCAG00000026072	POLR2G	62	42.775	Felis_catus
YDR404C	RPB7	100	42.775	ENSFDAG00000020977	POLR2G	99	42.775	Fukomys_damarensis
YDR404C	RPB7	100	42.197	ENSFHEG00000003053	polr2gl	99	42.197	Fundulus_heteroclitus
YDR404C	RPB7	95	43.293	ENSGMOG00000000535	polr2gl	99	43.293	Gadus_morhua
YDR404C	RPB7	95	42.683	ENSGAFG00000001773	polr2gl	97	42.683	Gambusia_affinis
YDR404C	RPB7	100	42.775	ENSGACG00000017706	polr2gl	99	42.775	Gasterosteus_aculeatus
YDR404C	RPB7	96	43.114	ENSGAGG00000001303	POLR2G	98	43.114	Gopherus_agassizii
YDR404C	RPB7	100	42.775	ENSGGOG00000011739	POLR2G	99	42.775	Gorilla_gorilla
YDR404C	RPB7	96	43.114	ENSHBUG00000011421	polr2gl	91	43.114	Haplochromis_burtoni
YDR404C	RPB7	100	42.775	ENSHGLG00000004851	POLR2G	99	42.775	Heterocephalus_glaber_female
YDR404C	RPB7	99	42.604	ENSHGLG00100018441	POLR2G	99	42.604	Heterocephalus_glaber_male
YDR404C	RPB7	100	42.775	ENSHCOG00000009499	polr2gl	90	42.775	Hippocampus_comes
YDR404C	RPB7	100	42.197	ENSIPUG00000000671	polr2g	99	42.197	Ictalurus_punctatus
YDR404C	RPB7	100	42.775	ENSSTOG00000004391	POLR2G	99	42.775	Ictidomys_tridecemlineatus
YDR404C	RPB7	100	42.775	ENSJJAG00000005019	Polr2g	99	42.775	Jaculus_jaculus
YDR404C	RPB7	99	43.275	ENSKMAG00000011056	polr2gl	89	43.275	Kryptolebias_marmoratus
YDR404C	RPB7	100	42.775	ENSLBEG00000001458	polr2gl	99	42.775	Labrus_bergylta
YDR404C	RPB7	100	42.614	ENSLACG00000006420	POLR2G	99	42.614	Latimeria_chalumnae
YDR404C	RPB7	100	42.775	ENSLAFG00000004354	POLR2G	99	42.775	Loxodonta_africana
YDR404C	RPB7	100	42.775	ENSMFAG00000033674	POLR2G	99	42.775	Macaca_fascicularis
YDR404C	RPB7	100	42.775	ENSMMUG00000014368	POLR2G	99	42.775	Macaca_mulatta
YDR404C	RPB7	100	42.775	ENSMNEG00000041523	POLR2G	99	42.775	Macaca_nemestrina
YDR404C	RPB7	100	42.775	ENSMLEG00000032928	POLR2G	99	42.775	Mandrillus_leucophaeus
YDR404C	RPB7	95	42.683	ENSMAMG00000001188	polr2gl	99	42.683	Mastacembelus_armatus
YDR404C	RPB7	100	42.775	ENSMZEG00005003618	polr2gl	99	42.775	Maylandia_zebra
YDR404C	RPB7	56	46.875	ENSMAUG00000013079	Polr2g	100	46.875	Mesocricetus_auratus
YDR404C	RPB7	100	42.775	ENSMICG00000009967	POLR2G	99	42.775	Microcebus_murinus
YDR404C	RPB7	87	43.046	ENSMOCG00000010638	Polr2g	88	43.046	Microtus_ochrogaster
YDR404C	RPB7	99	43.275	ENSMMOG00000003102	polr2gl	93	43.275	Mola_mola
YDR404C	RPB7	100	42.775	ENSMODG00000007984	POLR2G	99	42.775	Monodelphis_domestica
YDR404C	RPB7	100	42.775	ENSMALG00000013385	polr2gl	99	42.775	Monopterus_albus
YDR404C	RPB7	100	42.775	MGP_CAROLIEiJ_G0022653	Polr2g	99	42.775	Mus_caroli
YDR404C	RPB7	100	42.775	ENSMUSG00000071662	Polr2g	99	42.775	Mus_musculus
YDR404C	RPB7	100	42.775	MGP_PahariEiJ_G0014148	Polr2g	99	42.775	Mus_pahari
YDR404C	RPB7	100	42.775	MGP_SPRETEiJ_G0023566	Polr2g	99	42.775	Mus_spretus
YDR404C	RPB7	100	42.775	ENSMPUG00000013667	POLR2G	99	42.775	Mustela_putorius_furo
YDR404C	RPB7	100	42.775	ENSMLUG00000011039	-	99	42.775	Myotis_lucifugus
YDR404C	RPB7	100	42.197	ENSMLUG00000003971	-	99	42.197	Myotis_lucifugus
YDR404C	RPB7	100	42.775	ENSNGAG00000020624	Polr2g	99	42.775	Nannospalax_galili
YDR404C	RPB7	87	43.046	ENSNBRG00000003949	polr2gl	92	43.046	Neolamprologus_brichardi
YDR404C	RPB7	95	35.714	ENSNLEG00000004097	-	91	35.714	Nomascus_leucogenys
YDR404C	RPB7	98	42.941	ENSMEUG00000011547	POLR2G	100	42.941	Notamacropus_eugenii
YDR404C	RPB7	100	33.526	ENSOPRG00000014769	POLR2G	99	33.526	Ochotona_princeps
YDR404C	RPB7	100	42.775	ENSODEG00000002048	-	99	42.775	Octodon_degus
YDR404C	RPB7	91	38.854	ENSODEG00000018495	-	99	38.854	Octodon_degus
YDR404C	RPB7	100	31.792	ENSODEG00000005609	-	99	31.792	Octodon_degus
YDR404C	RPB7	100	42.775	ENSONIG00000005183	polr2gl	99	42.775	Oreochromis_niloticus
YDR404C	RPB7	100	42.775	ENSOANG00000005808	POLR2G	99	42.775	Ornithorhynchus_anatinus
YDR404C	RPB7	100	42.775	ENSOCUG00000009485	POLR2G	99	42.775	Oryctolagus_cuniculus
YDR404C	RPB7	100	42.775	ENSORLG00000003154	polr2gl	99	42.775	Oryzias_latipes
YDR404C	RPB7	95	43.636	ENSORLG00020017682	polr2gl	95	43.636	Oryzias_latipes_hni
YDR404C	RPB7	100	42.775	ENSORLG00015018537	polr2gl	99	42.775	Oryzias_latipes_hsok
YDR404C	RPB7	100	42.775	ENSOMEG00000020086	polr2gl	99	42.775	Oryzias_melastigma
YDR404C	RPB7	100	38.983	ENSOGAG00000032720	POLR2G	99	38.983	Otolemur_garnettii
YDR404C	RPB7	96	42.857	ENSOARG00000016984	POLR2G	79	42.857	Ovis_aries
YDR404C	RPB7	100	42.775	ENSPPAG00000039868	POLR2G	99	42.775	Pan_paniscus
YDR404C	RPB7	100	42.775	ENSPPRG00000005669	POLR2G	99	42.775	Panthera_pardus
YDR404C	RPB7	100	41.477	ENSPTIG00000015781	POLR2G	99	41.477	Panthera_tigris_altaica
YDR404C	RPB7	100	42.775	ENSPANG00000025888	POLR2G	99	42.775	Papio_anubis
YDR404C	RPB7	100	42.775	ENSPKIG00000000902	polr2gl	88	43.114	Paramormyrops_kingsleyae
YDR404C	RPB7	100	42.775	ENSPSIG00000004285	POLR2G	81	42.775	Pelodiscus_sinensis
YDR404C	RPB7	100	42.775	ENSPMGG00000008462	polr2gl	99	42.775	Periophthalmus_magnuspinnatus
YDR404C	RPB7	100	42.775	ENSPEMG00000000685	Polr2g	99	42.775	Peromyscus_maniculatus_bairdii
YDR404C	RPB7	100	42.775	ENSPCIG00000015245	-	99	42.775	Phascolarctos_cinereus
YDR404C	RPB7	61	45.714	ENSPFOG00000024274	polr2gl	94	45.714	Poecilia_formosa
YDR404C	RPB7	99	43.275	ENSPLAG00000022848	polr2gl	95	43.275	Poecilia_latipinna
YDR404C	RPB7	100	42.775	ENSPMEG00000009317	polr2gl	99	42.775	Poecilia_mexicana
YDR404C	RPB7	100	42.775	ENSPREG00000016633	polr2gl	99	42.775	Poecilia_reticulata
YDR404C	RPB7	100	38.150	ENSPPYG00000003147	POLR2G	99	38.150	Pongo_abelii
YDR404C	RPB7	100	42.775	ENSPCAG00000016408	POLR2G	99	42.775	Procavia_capensis
YDR404C	RPB7	100	42.775	ENSPCOG00000024131	POLR2G	99	42.775	Propithecus_coquereli
YDR404C	RPB7	100	42.197	ENSPVAG00000003481	POLR2G	99	42.197	Pteropus_vampyrus
YDR404C	RPB7	100	42.775	ENSPNYG00000016136	polr2gl	99	42.775	Pundamilia_nyererei
YDR404C	RPB7	100	42.775	ENSPNAG00000025210	polr2gl	99	42.775	Pygocentrus_nattereri
YDR404C	RPB7	100	42.775	ENSRNOG00000019439	Polr2g	99	42.775	Rattus_norvegicus
YDR404C	RPB7	100	42.775	ENSRBIG00000009173	POLR2G	99	42.775	Rhinopithecus_bieti
YDR404C	RPB7	96	43.114	ENSRROG00000033543	POLR2G	78	40.523	Rhinopithecus_roxellana
YDR404C	RPB7	100	42.775	ENSSBOG00000015220	POLR2G	99	42.775	Saimiri_boliviensis_boliviensis
YDR404C	RPB7	100	42.775	ENSSHAG00000006006	POLR2G	99	42.775	Sarcophilus_harrisii
YDR404C	RPB7	100	42.775	ENSSFOG00015001245	polr2g	99	42.775	Scleropages_formosus
YDR404C	RPB7	100	42.775	ENSSMAG00000001197	polr2gl	99	42.775	Scophthalmus_maximus
YDR404C	RPB7	100	42.775	ENSSDUG00000015179	polr2gl	99	42.775	Seriola_dumerili
YDR404C	RPB7	100	42.775	ENSSLDG00000001822	polr2gl	99	42.775	Seriola_lalandi_dorsalis
YDR404C	RPB7	100	42.775	ENSSPUG00000008614	POLR2G	99	42.775	Sphenodon_punctatus
YDR404C	RPB7	99	43.275	ENSSPAG00000015276	polr2gl	99	43.275	Stegastes_partitus
YDR404C	RPB7	100	42.775	ENSSSCG00000025571	POLR2G	99	42.775	Sus_scrofa
YDR404C	RPB7	79	41.481	ENSTGUG00000014456	POLR2G	100	41.481	Taeniopygia_guttata
YDR404C	RPB7	100	42.775	ENSTRUG00000002492	polr2gl	99	42.775	Takifugu_rubripes
YDR404C	RPB7	79	41.481	ENSTBEG00000015752	POLR2G	77	41.481	Tupaia_belangeri
YDR404C	RPB7	100	42.775	ENSTTRG00000002478	POLR2G	99	42.775	Tursiops_truncatus
YDR404C	RPB7	100	42.775	ENSUAMG00000025968	POLR2G	99	42.775	Ursus_americanus
YDR404C	RPB7	67	44.737	ENSUMAG00000014537	POLR2G	67	44.737	Ursus_maritimus
YDR404C	RPB7	75	38.168	ENSVPAG00000009534	POLR2G	99	38.168	Vicugna_pacos
YDR404C	RPB7	100	42.775	ENSVVUG00000029844	POLR2G	99	42.775	Vulpes_vulpes
YDR404C	RPB7	100	42.197	ENSXETG00000006022	polr2g	99	42.197	Xenopus_tropicalis
YDR404C	RPB7	99	43.275	ENSXCOG00000002005	polr2gl	93	43.275	Xiphophorus_couchianus
YDR404C	RPB7	99	43.275	ENSXMAG00000010063	polr2gl	93	43.275	Xiphophorus_maculatus