EuRBPDB

Description

Ensembl ID: YDR496C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1971
Position: chrIV:1441433-1443403
Accession: S000002904
RBP type: canonical RBP
Summary: Pumilio-homology domain protein%3B binds the 3' UTR of ASH1 mRNA and represses its translation%2C resulting in proper asymmetric localization of ASH1 mRNA%3B required at post-transcriptional step for efficient retrotransposition%3B absence results in decreased Ty1 Gag:GFP protein levels%3B co-sediments with the 60S ribosomal subunit and is required for its biogenesis

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDR496C_mRNA	CPL	PF08144.11	2.4e-52	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDR496C_mRNA	-	1971	-	YDR496C_mRNA	656 (aa)	-	Q04373

Gene Model

Protein-Protein Interaction (PPI)

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDR496C	-	55	30.471	ENSACAG00000003174	PUM3	60	30.471	Anolis_carolinensis
YDR496C	-	59	30.424	ENSCING00000024199	-	70	30.424	Ciona_intestinalis
YDR496C	-	59	30.570	ENSMODG00000015417	PUM3	53	30.570	Monodelphis_domestica
YDR496C	-	61	30.296	ENSPCIG00000030598	PUM3	54	30.296	Phascolarctos_cinereus