EuRBPDB

Description

Ensembl ID: YDR500C (Gene tree)
Gene ID: -
Gene Symbol: RPL37B
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 656
Position: chrIV:1450198-1450853
Accession: S000002908
RBP type: canonical RBP
Summary: Ribosomal 60S subunit protein L37B%3B required for processing of 27SB pre-rRNA and formation of stable 66S assembly intermediates%3B protein abundance increases in response to DNA replication stress%3B homologous to mammalian ribosomal protein L37%2C no bacterial homolog%3B RPL37B has a paralog%2C RPL37A%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YDR500C_mRNA	Ribosomal_L37e	PF01907.19	1.2e-27	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YDR500C_mRNA	-	267	-	YDR500C_mRNA	88 (aa)	-	P51402

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YDR500C	RPL37B	100	93.182	YLR185W	RPL37A	100	93.182

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YDR500C	RPL37B	93	64.634	WBGene00012179	W01D2.1	89	64.634	Caenorhabditis_elegans
YDR500C	RPL37B	95	61.905	WBGene00004451	rpl-37	92	61.905	Caenorhabditis_elegans
YDR500C	RPL37B	94	66.265	FBgn0034822	RpL37b	93	66.265	Drosophila_melanogaster
YDR500C	RPL37B	93	70.732	FBgn0030616	RpL37a	88	70.732	Drosophila_melanogaster
YDR500C	RPL37B	83	60.274	ENSSLDG00000001500	-	80	60.274	Seriola_lalandi_dorsalis