EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YER006W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: GTPase that associates with nuclear 60S pre-ribosomes%3B required for export of 60S ribosomal subunits from the nucleus
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1563 bases
Position: chrV:162723-164285
Accession: S000000808
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YER006W_mRNA	GN3L_Grn1	PF08701.11	5.4e-23	1	1
YER006W_mRNA	MMR_HSR1	PF01926.23	2.3e-19	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YER006W_mRNA	-	1563	-	YER006W_mRNA	520 (aa)	-	P40010

Gene Model

Click here to download YER006W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YER006W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YER006W	-	57	32.095	YNR053C	NOG2	54	32.323

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YER006W	-	96	33.267	WBGene00003821	nst-1	78	33.267	Caenorhabditis_elegans
YER006W	-	59	39.062	ENSCING00000010738	-	55	38.750	Ciona_intestinalis
YER006W	-	96	33.855	ENSCSAVG00000007394	-	80	33.855	Ciona_savignyi
YER006W	-	98	34.231	FBgn0038473	Ns1	77	34.231	Drosophila_melanogaster