EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YER013W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 3438
Position: chrV:178841-182278
Accession: S000000815
RBP type: canonical RBP
Summary: DEAH-box RNA-dependent ATPase/ATP-dependent RNA helicase%3B associates with lariat intermediates before the second catalytic step of splicing%3B mediates ATP-dependent mRNA release from the spliceosome and unwinds RNA duplexes%3B required for proofreading the exon ligation reaction

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YER013W_mRNA	S1	PF00575.23	1.9e-13	1	1
YER013W_mRNA	HA2	PF04408.23	1.3e-22	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YER013W_mRNA	-	3438	-	YER013W_mRNA	1145 (aa)	-	P24384

Gene Model

Click here to download YER013W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YER013W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YER013W	-	54	39.907	YKL078W	-	87	39.969
YER013W	-	54	47.738	YKR086W	PRP16	60	47.738
YER013W	-	56	42.687	YNR011C	PRP2	76	42.687
YER013W	-	54	50.000	YGL120C	PRP43	83	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YER013W	-	84	49.248	ENSG00000067596	DHX8	87	43.333	Homo_sapiens
YER013W	-	84	50.000	ENSAPOG00000018162	dhx8	81	49.445	Acanthochromis_polyacanthus
YER013W	-	84	49.448	ENSAMEG00000018294	DHX8	78	49.699	Ailuropoda_melanoleuca
YER013W	-	84	50.301	ENSACIG00000013170	dhx8	83	50.552	Amphilophus_citrinellus
YER013W	-	84	50.000	ENSAOCG00000006439	dhx8	85	50.451	Amphiprion_ocellaris
YER013W	-	84	50.201	ENSAPEG00000005641	dhx8	81	50.451	Amphiprion_percula
YER013W	-	84	50.101	ENSATEG00000007660	dhx8	85	50.352	Anabas_testudineus
YER013W	-	84	49.699	ENSAPLG00000002788	DHX8	77	50.151	Anas_platyrhynchos
YER013W	-	84	50.101	ENSACAG00000013509	DHX8	81	50.554	Anolis_carolinensis
YER013W	-	84	49.448	ENSANAG00000030580	DHX8	82	49.899	Aotus_nancymaae
YER013W	-	84	50.301	ENSACLG00000024759	dhx8	85	50.552	Astatotilapia_calliptera
YER013W	-	84	50.302	ENSAMXG00000009430	dhx8	80	50.755	Astyanax_mexicanus
YER013W	-	84	49.248	ENSBTAG00000008339	DHX8	79	49.699	Bos_taurus
YER013W	-	84	49.748	WBGene00003393	mog-5	80	49.748	Caenorhabditis_elegans
YER013W	-	84	49.448	ENSCJAG00000010659	-	80	49.848	Callithrix_jacchus
YER013W	-	84	49.248	ENSCAFG00000014556	DHX8	78	49.899	Canis_familiaris
YER013W	-	84	49.248	ENSCAFG00020012922	DHX8	85	49.899	Canis_lupus_dingo
YER013W	-	84	49.248	ENSCHIG00000009291	DHX8	79	49.699	Capra_hircus
YER013W	-	84	49.597	ENSTSYG00000008782	DHX8	83	49.699	Carlito_syrichta
YER013W	-	84	49.899	ENSCAPG00000005701	DHX8	79	50.355	Cavia_aperea
YER013W	-	84	49.899	ENSCPOG00000000224	DHX8	79	50.151	Cavia_porcellus
YER013W	-	84	49.647	ENSCCAG00000021748	DHX8	81	49.899	Cebus_capucinus
YER013W	-	84	49.549	ENSCATG00000043128	DHX8	82	49.800	Cercocebus_atys
YER013W	-	84	49.697	ENSCLAG00000016045	DHX8	78	50.152	Chinchilla_lanigera
YER013W	-	84	49.698	ENSCSAG00000003443	DHX8	78	49.899	Chlorocebus_sabaeus
YER013W	-	74	49.884	ENSCHOG00000009720	DHX8	69	50.405	Choloepus_hoffmanni
YER013W	-	84	49.699	ENSCPBG00000016252	DHX8	80	49.950	Chrysemys_picta_bellii
YER013W	-	84	48.586	ENSCING00000001546	-	81	48.687	Ciona_intestinalis
YER013W	-	76	50.056	ENSCSAVG00000002918	-	79	50.056	Ciona_savignyi
YER013W	-	84	49.348	ENSCANG00000031479	DHX8	82	50.000	Colobus_angolensis_palliatus
YER013W	-	84	49.448	ENSCGRG00001021413	Dhx8	78	49.699	Cricetulus_griseus_chok1gshd
YER013W	-	84	50.301	ENSCSEG00000015029	dhx8	84	48.123	Cynoglossus_semilaevis
YER013W	-	84	50.402	ENSCVAG00000006188	dhx8	84	50.653	Cyprinodon_variegatus
YER013W	-	84	50.453	ENSDARG00000054707	dhx8	79	50.911	Danio_rerio
YER013W	-	84	49.149	ENSDNOG00000013606	DHX8	78	49.400	Dasypus_novemcinctus
YER013W	-	84	46.740	ENSDORG00000013845	Dhx8	77	47.023	Dipodomys_ordii
YER013W	-	83	50.303	FBgn0086895	pea	77	50.250	Drosophila_melanogaster
YER013W	-	51	67.917	ENSETEG00000010986	DHX8	55	67.917	Echinops_telfairi
YER013W	-	78	45.168	ENSEBUG00000001680	dhx8	77	45.385	Eptatretus_burgeri
YER013W	-	84	49.248	ENSEASG00005010097	DHX8	78	49.699	Equus_asinus_asinus
YER013W	-	84	49.248	ENSECAG00000019601	DHX8	78	49.699	Equus_caballus
YER013W	-	61	58.333	ENSEEUG00000004835	-	57	58.333	Erinaceus_europaeus
YER013W	-	84	49.596	ENSELUG00000007955	dhx8	82	49.849	Esox_lucius
YER013W	-	84	49.248	ENSFCAG00000009908	DHX8	78	49.699	Felis_catus
YER013W	-	84	49.499	ENSFALG00000000810	DHX8	86	50.151	Ficedula_albicollis
YER013W	-	84	49.596	ENSFDAG00000017832	-	79	50.050	Fukomys_damarensis
YER013W	-	84	50.402	ENSFHEG00000012389	dhx8	79	50.653	Fundulus_heteroclitus
YER013W	-	84	49.348	ENSGMOG00000016093	dhx8	80	49.800	Gadus_morhua
YER013W	-	75	50.882	ENSGMOG00000016045	dhx8	74	50.882	Gadus_morhua
YER013W	-	84	48.096	ENSGALG00000032305	DHX8	80	48.540	Gallus_gallus
YER013W	-	84	50.503	ENSGAFG00000012510	dhx8	81	50.754	Gambusia_affinis
YER013W	-	84	49.239	ENSGACG00000003736	dhx8	82	49.446	Gasterosteus_aculeatus
YER013W	-	84	49.850	ENSGACG00000003750	dhx8	87	50.100	Gasterosteus_aculeatus
YER013W	-	84	49.950	ENSGAGG00000024323	DHX8	80	50.201	Gopherus_agassizii
YER013W	-	84	49.248	ENSGGOG00000000143	DHX8	81	49.798	Gorilla_gorilla
YER013W	-	84	50.302	ENSHBUG00000005644	dhx8	84	50.552	Haplochromis_burtoni
YER013W	-	84	49.697	ENSHGLG00000011583	-	78	50.355	Heterocephalus_glaber_female
YER013W	-	84	49.596	ENSHGLG00100000532	-	78	50.254	Heterocephalus_glaber_male
YER013W	-	84	50.101	ENSHCOG00000016177	dhx8	80	50.758	Hippocampus_comes
YER013W	-	84	50.151	ENSIPUG00000019179	dhx8	79	50.810	Ictalurus_punctatus
YER013W	-	84	49.248	ENSSTOG00000013747	DHX8	78	49.899	Ictidomys_tridecemlineatus
YER013W	-	84	49.248	ENSJJAG00000017249	Dhx8	81	49.899	Jaculus_jaculus
YER013W	-	84	50.402	ENSKMAG00000005568	dhx8	78	50.859	Kryptolebias_marmoratus
YER013W	-	84	48.896	ENSLBEG00000012048	dhx8	79	49.546	Labrus_bergylta
YER013W	-	84	49.345	ENSLBEG00000011490	dhx8	80	49.648	Labrus_bergylta
YER013W	-	84	49.849	ENSLACG00000001765	DHX8	80	50.402	Latimeria_chalumnae
YER013W	-	84	50.000	ENSLOCG00000012147	dhx8	79	50.659	Lepisosteus_oculatus
YER013W	-	84	49.248	ENSLAFG00000022159	DHX8	80	49.699	Loxodonta_africana
YER013W	-	84	49.549	ENSMFAG00000044651	DHX8	82	49.800	Macaca_fascicularis
YER013W	-	84	49.549	ENSMMUG00000012071	DHX8	82	50.000	Macaca_mulatta
YER013W	-	84	49.348	ENSMNEG00000033786	DHX8	83	50.000	Macaca_nemestrina
YER013W	-	76	48.942	ENSMLEG00000006176	DHX8	76	49.073	Mandrillus_leucophaeus
YER013W	-	84	50.100	ENSMAMG00000006195	dhx8	79	50.757	Mastacembelus_armatus
YER013W	-	84	50.302	ENSMZEG00005007559	dhx8	84	50.552	Maylandia_zebra
YER013W	-	83	49.592	ENSMGAG00000002343	DHX8	79	49.847	Meleagris_gallopavo
YER013W	-	84	49.248	ENSMICG00000009509	DHX8	82	49.699	Microcebus_murinus
YER013W	-	84	49.448	ENSMOCG00000008962	Dhx8	78	49.899	Microtus_ochrogaster
YER013W	-	84	50.101	ENSMMOG00000000596	dhx8	88	50.758	Mola_mola
YER013W	-	67	54.872	ENSMMOG00000000567	dhx8	97	54.340	Mola_mola
YER013W	-	84	49.599	ENSMODG00000015181	DHX8	80	49.850	Monodelphis_domestica
YER013W	-	84	48.594	ENSMALG00000013129	dhx8	78	49.243	Monopterus_albus
YER013W	-	84	49.448	MGP_CAROLIEiJ_G0017228	Dhx8	77	49.899	Mus_caroli
YER013W	-	84	49.248	ENSMUSG00000034931	Dhx8	80	50.102	Mus_musculus
YER013W	-	84	49.248	MGP_PahariEiJ_G0018358	Dhx8	77	49.899	Mus_pahari
YER013W	-	84	49.248	MGP_SPRETEiJ_G0018071	Dhx8	89	52.241	Mus_spretus
YER013W	-	84	49.448	ENSMPUG00000009717	DHX8	78	49.899	Mustela_putorius_furo
YER013W	-	84	48.594	ENSMLUG00000000090	DHX8	77	48.896	Myotis_lucifugus
YER013W	-	84	49.448	ENSNGAG00000023993	Dhx8	78	49.899	Nannospalax_galili
YER013W	-	84	50.301	ENSNBRG00000023205	dhx8	83	50.552	Neolamprologus_brichardi
YER013W	-	82	49.588	ENSMEUG00000016093	DHX8	80	50.052	Notamacropus_eugenii
YER013W	-	74	47.744	ENSOPRG00000014865	DHX8	72	47.744	Ochotona_princeps
YER013W	-	84	49.347	ENSODEG00000018025	DHX8	78	49.799	Octodon_degus
YER013W	-	84	50.000	ENSONIG00000018248	dhx8	79	50.656	Oreochromis_niloticus
YER013W	-	81	50.260	ENSOCUG00000008014	DHX8	77	50.520	Oryctolagus_cuniculus
YER013W	-	84	50.050	ENSORLG00000011951	dhx8	79	50.503	Oryzias_latipes
YER013W	-	84	50.050	ENSORLG00020022333	dhx8	76	50.709	Oryzias_latipes_hni
YER013W	-	84	50.000	ENSORLG00015021793	dhx8	76	50.657	Oryzias_latipes_hsok
YER013W	-	84	50.000	ENSOMEG00000004222	dhx8	82	49.507	Oryzias_melastigma
YER013W	-	84	49.142	ENSOGAG00000010418	DHX8	77	49.594	Otolemur_garnettii
YER013W	-	84	49.248	ENSOARG00000005409	DHX8	78	49.899	Ovis_aries
YER013W	-	84	49.248	ENSPPAG00000042508	DHX8	82	49.699	Pan_paniscus
YER013W	-	84	49.248	ENSPPRG00000003753	DHX8	78	49.699	Panthera_pardus
YER013W	-	84	49.248	ENSPTIG00000008944	DHX8	78	49.699	Panthera_tigris_altaica
YER013W	-	84	49.248	ENSPTRG00000009246	DHX8	82	49.699	Pan_troglodytes
YER013W	-	84	49.549	ENSPANG00000021364	DHX8	81	50.000	Papio_anubis
YER013W	-	84	50.554	ENSPKIG00000001290	dhx8	84	50.805	Paramormyrops_kingsleyae
YER013W	-	84	49.599	ENSPSIG00000005550	DHX8	85	50.252	Pelodiscus_sinensis
YER013W	-	84	50.402	ENSPMGG00000019078	dhx8	80	50.859	Periophthalmus_magnuspinnatus
YER013W	-	84	49.549	ENSPEMG00000012654	Dhx8	80	49.800	Peromyscus_maniculatus_bairdii
YER013W	-	66	54.796	ENSPMAG00000001726	dhx8	100	54.796	Petromyzon_marinus
YER013W	-	84	49.599	ENSPCIG00000030254	DHX8	80	49.850	Phascolarctos_cinereus
YER013W	-	84	50.302	ENSPFOG00000017661	dhx8	76	50.961	Poecilia_formosa
YER013W	-	84	50.302	ENSPLAG00000011548	dhx8	76	50.961	Poecilia_latipinna
YER013W	-	84	50.302	ENSPMEG00000008166	dhx8	76	50.961	Poecilia_mexicana
YER013W	-	84	50.302	ENSPREG00000011752	dhx8	76	50.961	Poecilia_reticulata
YER013W	-	84	49.248	ENSPPYG00000008357	DHX8	79	49.699	Pongo_abelii
YER013W	-	67	60.000	ENSPCAG00000015519	DHX8	70	60.000	Procavia_capensis
YER013W	-	84	49.147	ENSPVAG00000014872	DHX8	79	49.599	Pteropus_vampyrus
YER013W	-	84	50.100	ENSPNYG00000001365	dhx8	79	50.757	Pundamilia_nyererei
YER013W	-	84	50.252	ENSPNAG00000008427	dhx8	79	50.911	Pygocentrus_nattereri
YER013W	-	84	49.448	ENSRNOG00000020772	Dhx8	78	50.051	Rattus_norvegicus
YER013W	-	84	49.002	ENSRBIG00000039031	DHX8	100	50.000	Rhinopithecus_bieti
YER013W	-	84	49.348	ENSRROG00000036032	DHX8	82	50.000	Rhinopithecus_roxellana
YER013W	-	84	49.448	ENSSBOG00000031719	DHX8	82	49.899	Saimiri_boliviensis_boliviensis
YER013W	-	84	49.399	ENSSHAG00000009871	DHX8	80	49.850	Sarcophilus_harrisii
YER013W	-	84	50.252	ENSSFOG00015024187	dhx8	81	50.503	Scleropages_formosus
YER013W	-	84	48.546	ENSSMAG00000008522	dhx8	85	48.546	Scophthalmus_maximus
YER013W	-	84	50.050	ENSSMAG00000008607	dhx8	86	50.252	Scophthalmus_maximus
YER013W	-	84	49.189	ENSSDUG00000010822	dhx8	80	48.943	Seriola_dumerili
YER013W	-	84	50.000	ENSSDUG00000010774	dhx8	83	50.252	Seriola_dumerili
YER013W	-	84	50.000	ENSSLDG00000023594	dhx8	82	50.656	Seriola_lalandi_dorsalis
YER013W	-	84	47.972	ENSSLDG00000023277	dhx8	80	47.734	Seriola_lalandi_dorsalis
YER013W	-	65	63.105	ENSSARG00000007300	DHX8	62	63.105	Sorex_araneus
YER013W	-	84	49.599	ENSSPUG00000004382	DHX8	80	50.050	Sphenodon_punctatus
YER013W	-	84	48.746	ENSSPAG00000006314	dhx8	81	48.998	Stegastes_partitus
YER013W	-	84	49.348	ENSSSCG00000017378	DHX8	79	49.699	Sus_scrofa
YER013W	-	84	49.499	ENSTGUG00000002881	DHX8	80	49.950	Taeniopygia_guttata
YER013W	-	84	48.986	ENSTRUG00000004063	dhx8	81	49.493	Takifugu_rubripes
YER013W	-	84	48.986	ENSTNIG00000002771	dhx8	80	49.443	Tetraodon_nigroviridis
YER013W	-	55	54.545	ENSTBEG00000012089	DHX8	53	54.990	Tupaia_belangeri
YER013W	-	84	48.044	ENSTTRG00000016056	DHX8	79	48.690	Tursiops_truncatus
YER013W	-	84	49.248	ENSUAMG00000018121	DHX8	82	49.699	Ursus_americanus
YER013W	-	84	49.248	ENSUMAG00000012797	DHX8	85	49.899	Ursus_maritimus
YER013W	-	84	49.448	ENSVVUG00000017409	DHX8	76	49.899	Vulpes_vulpes
YER013W	-	73	58.477	ENSXETG00000013672	dhx8	78	49.146	Xenopus_tropicalis
YER013W	-	84	50.301	ENSXCOG00000003866	dhx8	79	50.552	Xiphophorus_couchianus
YER013W	-	84	50.402	ENSXMAG00000017907	dhx8	79	50.653	Xiphophorus_maculatus