EuRBPDB

Description

Ensembl ID: YER031C (Gene tree)
Gene ID: -
Gene Symbol: YPT31
Alias: YPT8
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 672
Position: chrV:214076-214747
Accession: S000000833
RBP type: canonical RBP
Summary: Rab family GTPase%3B involved in the exocytic pathway%3B mediates intra-Golgi traffic or the budding of post-Golgi vesicles from the trans-Golgi%3B YPT31 has a paralog%2C YPT32%2C that arose from the whole genome duplication%3B localizes to the transitional and late Golgi

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YER031C_mRNA	MMR_HSR1	PF01926.23	4.7e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YER031C_mRNA	-	672	-	YER031C_mRNA	223 (aa)	-	P38555

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YER031C	YPT31	53	39.516	YBR264C	-	62	39.516
YER031C	YPT31	87	36.548	YLR262C	-	90	36.548
YER031C	YPT31	100	81.166	YGL210W	-	100	81.166
YER031C	YPT31	74	36.571	YML001W	YPT7	83	36.571
YER031C	YPT31	71	37.576	YNL093W	-	75	37.576
YER031C	YPT31	79	44.068	YFL005W	SEC4	82	44.068
YER031C	YPT31	74	39.896	YKR014C	-	82	39.896
YER031C	YPT31	76	40.698	YOR089C	VPS21	82	40.698

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YER031C	YPT31	88	53.807	WBGene00004275	rab-11.2	96	53.807	Caenorhabditis_elegans
YER031C	YPT31	86	48.691	ENSCING00000005409	-	85	48.691	Ciona_intestinalis
YER031C	YPT31	96	45.116	ENSCSAVG00000005120	-	89	45.116	Ciona_savignyi