EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YER057C (Gene tree)
Gene ID: -
Gene Symbol: HMF1
Alias: HIG1
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 390
Position: chrV:270737-271126
Accession: S000000859
RBP type: canonical RBP
Summary: Member of the p14.5 protein family%3B functionally complements Mmf1p function when targeted to mitochondria%3B heat shock inducible%3B high-dosage growth inhibitor%3B forms a homotrimer in vitro%3B HMF1 has a paralog%2C MMF1%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YER057C_mRNA	Ribonuc_L-PSP	PF01042.21	2.6e-44	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YER057C_mRNA	-	390	-	YER057C_mRNA	129 (aa)	-	P40037

Gene Model

Click here to download YER057C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YER057C's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YER057C	HMF1	99	70.312	YIL051C	MMF1	88	70.312

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YER057C	HMF1	89	41.379	ENSG00000132541	RIDA	74	41.584	Homo_sapiens
YER057C	HMF1	88	40.351	ENSAPOG00000008174	RIDA	74	38.614	Acanthochromis_polyacanthus
YER057C	HMF1	88	38.596	ENSAPOG00000018254	rida	75	38.614	Acanthochromis_polyacanthus
YER057C	HMF1	98	37.984	ENSAMEG00000000575	RIDA	75	38.835	Ailuropoda_melanoleuca
YER057C	HMF1	88	41.739	ENSACIG00000016465	rida	75	39.604	Amphilophus_citrinellus
YER057C	HMF1	88	37.719	ENSACIG00000004145	RIDA	74	35.644	Amphilophus_citrinellus
YER057C	HMF1	88	40.000	ENSAOCG00000012164	rida	75	38.614	Amphiprion_ocellaris
YER057C	HMF1	88	40.351	ENSAOCG00000000693	RIDA	74	38.614	Amphiprion_ocellaris
YER057C	HMF1	88	38.596	ENSAPEG00000010862	rida	75	38.614	Amphiprion_percula
YER057C	HMF1	88	40.351	ENSAPEG00000007659	RIDA	74	38.614	Amphiprion_percula
YER057C	HMF1	88	38.596	ENSATEG00000024808	RIDA	74	36.634	Anabas_testudineus
YER057C	HMF1	88	40.000	ENSATEG00000013313	rida	75	37.624	Anabas_testudineus
YER057C	HMF1	84	34.862	ENSAPLG00000014330	RIDA	84	35.644	Anas_platyrhynchos
YER057C	HMF1	81	33.962	ENSACAG00000016057	RIDA	88	33.663	Anolis_carolinensis
YER057C	HMF1	89	40.517	ENSANAG00000024491	RIDA	75	39.806	Aotus_nancymaae
YER057C	HMF1	88	42.105	ENSACLG00000014849	rida	79	31.538	Astatotilapia_calliptera
YER057C	HMF1	88	41.228	ENSACLG00000010985	RIDA	74	39.604	Astatotilapia_calliptera
YER057C	HMF1	88	39.130	ENSAMXG00000031748	rida	74	37.624	Astyanax_mexicanus
YER057C	HMF1	89	43.966	ENSBTAG00000012595	RIDA	75	42.718	Bos_taurus
YER057C	HMF1	89	41.379	ENSBTAG00000030230	-	75	39.806	Bos_taurus
YER057C	HMF1	97	36.220	WBGene00016011	C23G10.2	74	35.294	Caenorhabditis_elegans
YER057C	HMF1	89	40.517	ENSCJAG00000015560	RIDA	75	39.806	Callithrix_jacchus
YER057C	HMF1	88	42.105	ENSCAFG00000030250	RIDA	74	41.584	Canis_familiaris
YER057C	HMF1	66	36.047	ENSCAFG00000000465	-	69	34.722	Canis_familiaris
YER057C	HMF1	88	42.105	ENSCAFG00020026760	RIDA	74	41.584	Canis_lupus_dingo
YER057C	HMF1	89	43.103	ENSCHIG00000012463	RIDA	75	41.748	Capra_hircus
YER057C	HMF1	75	32.653	ENSCHIG00000008503	-	79	32.653	Capra_hircus
YER057C	HMF1	78	37.624	ENSTSYG00000034120	-	80	37.624	Carlito_syrichta
YER057C	HMF1	89	39.655	ENSTSYG00000003085	-	76	38.835	Carlito_syrichta
YER057C	HMF1	81	40.952	ENSCAPG00000008766	RIDA	89	41.584	Cavia_aperea
YER057C	HMF1	97	39.370	ENSCPOG00000036991	RIDA	74	41.584	Cavia_porcellus
YER057C	HMF1	79	41.748	ENSCCAG00000023149	RIDA	55	41.111	Cebus_capucinus
YER057C	HMF1	89	40.517	ENSCATG00000000896	-	74	39.806	Cercocebus_atys
YER057C	HMF1	89	40.517	ENSCATG00000035684	-	75	39.806	Cercocebus_atys
YER057C	HMF1	89	39.655	ENSCLAG00000006938	RIDA	74	39.604	Chinchilla_lanigera
YER057C	HMF1	89	39.655	ENSCSAG00000019607	-	75	39.806	Chlorocebus_sabaeus
YER057C	HMF1	89	40.517	ENSCHOG00000001278	RIDA	77	39.048	Choloepus_hoffmanni
YER057C	HMF1	88	34.211	ENSCPBG00000006365	RIDA	74	31.683	Chrysemys_picta_bellii
YER057C	HMF1	87	42.478	ENSCANG00000019322	-	74	42.000	Colobus_angolensis_palliatus
YER057C	HMF1	89	41.379	ENSCANG00000028892	-	75	40.777	Colobus_angolensis_palliatus
YER057C	HMF1	79	38.835	ENSCANG00000031626	-	81	38.835	Colobus_angolensis_palliatus
YER057C	HMF1	88	42.982	ENSCGRG00001019905	Rida	74	41.584	Cricetulus_griseus_chok1gshd
YER057C	HMF1	81	40.952	ENSCGRG00000009983	Rida	88	41.584	Cricetulus_griseus_crigri
YER057C	HMF1	88	39.130	ENSCSEG00000017340	rida	75	37.624	Cynoglossus_semilaevis
YER057C	HMF1	88	39.474	ENSCSEG00000008726	RIDA	72	37.624	Cynoglossus_semilaevis
YER057C	HMF1	88	35.652	ENSCVAG00000023041	rida	75	35.644	Cyprinodon_variegatus
YER057C	HMF1	88	40.351	ENSCVAG00000022232	RIDA	74	38.614	Cyprinodon_variegatus
YER057C	HMF1	88	35.088	ENSDARG00000035882	rida	79	33.645	Danio_rerio
YER057C	HMF1	89	43.103	ENSDNOG00000025138	RIDA	75	40.777	Dasypus_novemcinctus
YER057C	HMF1	88	40.870	ENSDORG00000015382	Rida	76	40.777	Dipodomys_ordii
YER057C	HMF1	84	38.532	FBgn0086691	UK114	72	39.000	Drosophila_melanogaster
YER057C	HMF1	81	37.736	ENSEBUG00000004270	rida	83	37.624	Eptatretus_burgeri
YER057C	HMF1	89	39.655	ENSECAG00000004316	-	75	38.835	Equus_caballus
YER057C	HMF1	89	39.655	ENSECAG00000035364	RIDA	75	38.835	Equus_caballus
YER057C	HMF1	88	38.596	ENSELUG00000015237	rida	75	39.604	Esox_lucius
YER057C	HMF1	88	37.719	ENSELUG00000003537	RIDA	72	36.634	Esox_lucius
YER057C	HMF1	89	41.379	ENSFCAG00000002167	RIDA	75	40.777	Felis_catus
YER057C	HMF1	97	33.333	ENSFALG00000005704	RIDA	74	35.644	Ficedula_albicollis
YER057C	HMF1	98	38.760	ENSFDAG00000016458	RIDA	74	40.594	Fukomys_damarensis
YER057C	HMF1	91	37.815	ENSFHEG00000019695	rida	75	38.614	Fundulus_heteroclitus
YER057C	HMF1	88	39.474	ENSFHEG00000019554	RIDA	74	37.624	Fundulus_heteroclitus
YER057C	HMF1	89	40.517	ENSGMOG00000002196	rida	78	38.614	Gadus_morhua
YER057C	HMF1	89	38.793	ENSGALG00000044554	RIDA	73	38.614	Gallus_gallus
YER057C	HMF1	88	36.842	ENSGAFG00000010376	rida	75	36.634	Gambusia_affinis
YER057C	HMF1	91	37.815	ENSGAFG00000019772	RIDA	69	37.624	Gambusia_affinis
YER057C	HMF1	88	39.130	ENSGACG00000003632	rida	75	37.624	Gasterosteus_aculeatus
YER057C	HMF1	81	32.075	ENSGAGG00000017043	RIDA	83	31.683	Gopherus_agassizii
YER057C	HMF1	89	41.379	ENSGGOG00000001185	RIDA	75	40.777	Gorilla_gorilla
YER057C	HMF1	88	41.739	ENSHBUG00000002322	rida	75	40.594	Haplochromis_burtoni
YER057C	HMF1	88	42.105	ENSHGLG00000005242	HRSP12	74	41.584	Heterocephalus_glaber_female
YER057C	HMF1	88	42.105	ENSHGLG00100017274	HRSP12	74	41.584	Heterocephalus_glaber_male
YER057C	HMF1	88	40.351	ENSHCOG00000020716	rida	75	38.614	Hippocampus_comes
YER057C	HMF1	88	40.000	ENSIPUG00000001793	rida	74	38.614	Ictalurus_punctatus
YER057C	HMF1	89	39.655	ENSSTOG00000011452	-	75	38.835	Ictidomys_tridecemlineatus
YER057C	HMF1	81	34.906	ENSSTOG00000034265	-	78	34.951	Ictidomys_tridecemlineatus
YER057C	HMF1	88	39.474	ENSKMAG00000001365	RIDA	74	37.624	Kryptolebias_marmoratus
YER057C	HMF1	88	37.719	ENSKMAG00000007630	rida	52	37.624	Kryptolebias_marmoratus
YER057C	HMF1	80	39.423	ENSLBEG00000027122	rida	58	37.778	Labrus_bergylta
YER057C	HMF1	87	38.053	ENSLACG00000012254	RIDA	74	37.624	Latimeria_chalumnae
YER057C	HMF1	88	39.474	ENSLOCG00000009827	rida	74	37.624	Lepisosteus_oculatus
YER057C	HMF1	89	40.517	ENSLAFG00000002078	RIDA	75	38.835	Loxodonta_africana
YER057C	HMF1	77	33.000	ENSLAFG00000029613	-	77	34.444	Loxodonta_africana
YER057C	HMF1	89	41.379	ENSMFAG00000028633	RIDA	75	40.777	Macaca_fascicularis
YER057C	HMF1	89	39.655	ENSMMUG00000037517	-	75	38.835	Macaca_mulatta
YER057C	HMF1	89	41.379	ENSMMUG00000005822	-	76	40.777	Macaca_mulatta
YER057C	HMF1	84	40.367	ENSMNEG00000039988	-	72	39.583	Macaca_nemestrina
YER057C	HMF1	89	41.379	ENSMNEG00000038879	-	75	40.777	Macaca_nemestrina
YER057C	HMF1	89	41.379	ENSMLEG00000015804	-	75	40.777	Mandrillus_leucophaeus
YER057C	HMF1	55	40.845	ENSMLEG00000000048	-	70	40.845	Mandrillus_leucophaeus
YER057C	HMF1	88	38.596	ENSMAMG00000004006	RIDA	74	36.634	Mastacembelus_armatus
YER057C	HMF1	88	39.130	ENSMAMG00000014238	rida	65	36.634	Mastacembelus_armatus
YER057C	HMF1	88	34.211	ENSMZEG00005028251	RIDA	73	31.683	Maylandia_zebra
YER057C	HMF1	88	42.609	ENSMZEG00005003305	rida	75	40.594	Maylandia_zebra
YER057C	HMF1	88	41.228	ENSMZEG00005025450	RIDA	74	39.604	Maylandia_zebra
YER057C	HMF1	88	36.283	ENSMICG00000038570	-	66	38.095	Microcebus_murinus
YER057C	HMF1	89	36.522	ENSMICG00000028777	-	73	36.275	Microcebus_murinus
YER057C	HMF1	88	40.351	ENSMICG00000038523	-	76	39.604	Microcebus_murinus
YER057C	HMF1	88	40.351	ENSMICG00000049126	-	74	39.604	Microcebus_murinus
YER057C	HMF1	88	40.351	ENSMICG00000046083	-	74	39.604	Microcebus_murinus
YER057C	HMF1	88	40.000	ENSMICG00000029505	-	78	39.216	Microcebus_murinus
YER057C	HMF1	88	40.351	ENSMOCG00000014887	Rida	75	38.614	Microtus_ochrogaster
YER057C	HMF1	88	40.000	ENSMMOG00000018535	rida	75	40.196	Mola_mola
YER057C	HMF1	79	36.893	ENSMMOG00000018248	RIDA	55	34.444	Mola_mola
YER057C	HMF1	91	36.975	ENSMODG00000027679	-	72	36.538	Monodelphis_domestica
YER057C	HMF1	88	42.982	ENSMODG00000006575	RIDA	75	41.584	Monodelphis_domestica
YER057C	HMF1	88	40.870	ENSMALG00000005610	rida	75	38.614	Monopterus_albus
YER057C	HMF1	89	40.517	MGP_CAROLIEiJ_G0019725	Rida	78	38.095	Mus_caroli
YER057C	HMF1	89	40.517	ENSMUSG00000022323	Rida	78	38.095	Mus_musculus
YER057C	HMF1	89	41.379	MGP_PahariEiJ_G0019734	Rida	76	39.806	Mus_pahari
YER057C	HMF1	89	40.517	MGP_SPRETEiJ_G0020621	Rida	78	38.095	Mus_spretus
YER057C	HMF1	98	38.760	ENSMPUG00000015253	RIDA	75	39.806	Mustela_putorius_furo
YER057C	HMF1	89	41.379	ENSMLUG00000027918	RIDA	76	39.806	Myotis_lucifugus
YER057C	HMF1	89	39.655	ENSNGAG00000024030	Rida	76	38.835	Nannospalax_galili
YER057C	HMF1	88	41.228	ENSNBRG00000002321	RIDA	74	39.604	Neolamprologus_brichardi
YER057C	HMF1	88	41.228	ENSNBRG00000013480	rida	75	41.584	Neolamprologus_brichardi
YER057C	HMF1	89	41.379	ENSNLEG00000027254	RIDA	75	40.777	Nomascus_leucogenys
YER057C	HMF1	88	40.351	ENSODEG00000003956	RIDA	75	40.594	Octodon_degus
YER057C	HMF1	88	42.609	ENSONIG00000002675	rida	75	40.594	Oreochromis_niloticus
YER057C	HMF1	57	43.836	ENSOANG00000019965	-	95	43.836	Ornithorhynchus_anatinus
YER057C	HMF1	90	41.026	ENSOANG00000021532	RIDA	78	40.385	Ornithorhynchus_anatinus
YER057C	HMF1	88	38.596	ENSOCUG00000017395	-	76	38.614	Oryctolagus_cuniculus
YER057C	HMF1	89	39.655	ENSOCUG00000024251	-	77	37.143	Oryctolagus_cuniculus
YER057C	HMF1	88	39.130	ENSORLG00000022285	RIDA	76	37.255	Oryzias_latipes
YER057C	HMF1	91	36.975	ENSORLG00000026007	rida	75	36.634	Oryzias_latipes
YER057C	HMF1	88	39.474	ENSORLG00020022452	RIDA	75	37.624	Oryzias_latipes_hni
YER057C	HMF1	91	36.134	ENSORLG00020007258	rida	75	35.644	Oryzias_latipes_hni
YER057C	HMF1	91	37.815	ENSORLG00015015318	rida	75	37.624	Oryzias_latipes_hsok
YER057C	HMF1	88	39.474	ENSORLG00015012717	RIDA	75	37.624	Oryzias_latipes_hsok
YER057C	HMF1	91	36.975	ENSOMEG00000013208	rida	75	39.604	Oryzias_melastigma
YER057C	HMF1	88	38.596	ENSOMEG00000006978	RIDA	75	37.624	Oryzias_melastigma
YER057C	HMF1	89	36.207	ENSOGAG00000033959	-	76	35.922	Otolemur_garnettii
YER057C	HMF1	89	37.391	ENSOGAG00000001465	-	76	36.275	Otolemur_garnettii
YER057C	HMF1	88	43.860	ENSOARG00000006295	-	74	42.574	Ovis_aries
YER057C	HMF1	89	41.379	ENSPPAG00000029672	RIDA	75	40.777	Pan_paniscus
YER057C	HMF1	89	42.241	ENSPPRG00000004025	RIDA	75	41.748	Panthera_pardus
YER057C	HMF1	89	42.241	ENSPTIG00000016283	RIDA	75	41.748	Panthera_tigris_altaica
YER057C	HMF1	89	41.379	ENSPTRG00000020457	RIDA	75	40.777	Pan_troglodytes
YER057C	HMF1	79	41.748	ENSPANG00000030103	-	77	41.111	Papio_anubis
YER057C	HMF1	89	36.207	ENSPKIG00000005859	-	74	36.634	Paramormyrops_kingsleyae
YER057C	HMF1	88	40.351	ENSPKIG00000016300	rida	74	38.614	Paramormyrops_kingsleyae
YER057C	HMF1	76	31.000	ENSPSIG00000013279	RIDA	93	31.000	Pelodiscus_sinensis
YER057C	HMF1	88	41.228	ENSPMGG00000022242	RIDA	74	39.604	Periophthalmus_magnuspinnatus
YER057C	HMF1	88	41.739	ENSPMGG00000022971	rida	75	40.594	Periophthalmus_magnuspinnatus
YER057C	HMF1	88	41.228	ENSPEMG00000021792	Rida	75	39.604	Peromyscus_maniculatus_bairdii
YER057C	HMF1	81	35.849	ENSPMAG00000000315	rida	90	34.951	Petromyzon_marinus
YER057C	HMF1	88	41.228	ENSPCIG00000012218	RIDA	75	40.594	Phascolarctos_cinereus
YER057C	HMF1	91	37.815	ENSPFOG00000014757	rida	75	36.634	Poecilia_formosa
YER057C	HMF1	91	37.815	ENSPLAG00000003076	-	75	36.634	Poecilia_latipinna
YER057C	HMF1	91	38.655	ENSPLAG00000004635	RIDA	74	38.614	Poecilia_latipinna
YER057C	HMF1	91	37.815	ENSPMEG00000022345	rida	75	36.634	Poecilia_mexicana
YER057C	HMF1	91	37.815	ENSPMEG00000019582	RIDA	74	37.624	Poecilia_mexicana
YER057C	HMF1	79	34.951	ENSPREG00000008630	rida	66	34.444	Poecilia_reticulata
YER057C	HMF1	79	39.806	ENSPREG00000020963	RIDA	66	37.778	Poecilia_reticulata
YER057C	HMF1	89	41.379	ENSPPYG00000018776	RIDA	75	40.777	Pongo_abelii
YER057C	HMF1	93	30.328	ENSPCAG00000016624	RIDA	77	30.208	Procavia_capensis
YER057C	HMF1	74	33.673	ENSPCOG00000020404	-	76	33.333	Propithecus_coquereli
YER057C	HMF1	82	42.056	ENSPCOG00000014936	-	74	41.584	Propithecus_coquereli
YER057C	HMF1	89	40.517	ENSPVAG00000014465	RIDA	74	40.594	Pteropus_vampyrus
YER057C	HMF1	79	38.835	ENSPNYG00000012172	rida	53	38.889	Pundamilia_nyererei
YER057C	HMF1	88	41.228	ENSPNYG00000004442	RIDA	74	39.604	Pundamilia_nyererei
YER057C	HMF1	82	38.318	ENSPNAG00000011060	rida	74	37.624	Pygocentrus_nattereri
YER057C	HMF1	98	41.860	ENSRNOG00000005437	Rida	75	41.748	Rattus_norvegicus
YER057C	HMF1	89	41.379	ENSRBIG00000009648	-	75	40.777	Rhinopithecus_bieti
YER057C	HMF1	89	41.379	ENSRBIG00000010661	-	74	40.777	Rhinopithecus_bieti
YER057C	HMF1	89	41.379	ENSRROG00000037373	-	75	40.777	Rhinopithecus_roxellana
YER057C	HMF1	89	41.379	ENSRROG00000018864	-	76	40.777	Rhinopithecus_roxellana
YER057C	HMF1	89	40.517	ENSSBOG00000011035	-	75	39.806	Saimiri_boliviensis_boliviensis
YER057C	HMF1	89	40.517	ENSSBOG00000022742	-	75	39.806	Saimiri_boliviensis_boliviensis
YER057C	HMF1	81	40.952	ENSSHAG00000001004	-	74	41.584	Sarcophilus_harrisii
YER057C	HMF1	98	32.061	ENSSHAG00000002113	-	72	32.381	Sarcophilus_harrisii
YER057C	HMF1	88	38.596	ENSSFOG00015007442	rida	74	36.634	Scleropages_formosus
YER057C	HMF1	88	36.842	ENSSMAG00000007263	rida	74	37.000	Scophthalmus_maximus
YER057C	HMF1	88	38.261	ENSSDUG00000011665	rida	74	36.000	Seriola_dumerili
YER057C	HMF1	88	41.228	ENSSDUG00000007850	RIDA	52	39.604	Seriola_dumerili
YER057C	HMF1	55	33.333	ENSSLDG00000004936	-	77	32.836	Seriola_lalandi_dorsalis
YER057C	HMF1	97	34.646	ENSSPUG00000003543	RIDA	74	33.663	Sphenodon_punctatus
YER057C	HMF1	88	40.351	ENSSPAG00000014984	RIDA	74	38.614	Stegastes_partitus
YER057C	HMF1	88	39.130	ENSSPAG00000019562	rida	75	36.634	Stegastes_partitus
YER057C	HMF1	89	42.241	ENSSSCG00000006079	RIDA	74	41.584	Sus_scrofa
YER057C	HMF1	97	32.540	ENSTGUG00000012005	RIDA	75	34.653	Taeniopygia_guttata
YER057C	HMF1	95	37.097	ENSTRUG00000014973	rida	75	37.624	Takifugu_rubripes
YER057C	HMF1	89	40.517	ENSTRUG00000010847	RIDA	73	39.216	Takifugu_rubripes
YER057C	HMF1	98	40.625	ENSTNIG00000013296	RIDA	75	41.176	Tetraodon_nigroviridis
YER057C	HMF1	65	36.471	ENSTBEG00000002602	RIDA	73	34.722	Tupaia_belangeri
YER057C	HMF1	98	37.984	ENSUAMG00000017306	RIDA	75	38.835	Ursus_americanus
YER057C	HMF1	98	37.984	ENSUMAG00000016949	RIDA	75	38.835	Ursus_maritimus
YER057C	HMF1	89	42.241	ENSVPAG00000008277	RIDA	75	40.777	Vicugna_pacos
YER057C	HMF1	88	42.105	ENSVVUG00000010986	RIDA	74	41.584	Vulpes_vulpes
YER057C	HMF1	91	38.655	ENSXCOG00000017040	RIDA	74	38.614	Xiphophorus_couchianus
YER057C	HMF1	80	37.500	ENSXCOG00000020050	rida	66	36.047	Xiphophorus_couchianus
YER057C	HMF1	91	37.815	ENSXMAG00000028764	RIDA	74	37.624	Xiphophorus_maculatus
YER057C	HMF1	88	37.719	ENSXMAG00000003693	rida	74	38.000	Xiphophorus_maculatus