EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YER112W (Gene tree)
Gene ID: -
Gene Symbol: LSM4
Alias: SDB23|USS1
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 564
Position: chrV:387232-387795
Accession: S000000914
RBP type: canonical RBP
Summary: Lsm (Like Sm) protein%3B part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay%3B nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA%2C snoRNA%2C and rRNA%3B forms cytoplasmic foci upon DNA replication stress

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YER112W_mRNA	LSM	PF01423.22	7.6e-19	1	1
YER112W_mRNA	SM-ATX	PF14438.6	3.4e-08	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	MS & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YER112W_mRNA	-	564	-	YER112W_mRNA	187 (aa)	-	P40070

Gene Model

Click here to download YER112W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YER112W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YER112W	LSM4	50	41.935	ENSG00000130520	LSM4	68	51.064	Homo_sapiens
YER112W	LSM4	51	41.053	ENSAPOG00000005643	lsm4	55	40.860	Acanthochromis_polyacanthus
YER112W	LSM4	51	41.053	ENSAOCG00000006414	lsm4	56	40.860	Amphiprion_ocellaris
YER112W	LSM4	51	41.053	ENSAPEG00000006238	lsm4	56	40.860	Amphiprion_percula
YER112W	LSM4	51	41.053	ENSATEG00000016559	lsm4	55	40.860	Anabas_testudineus
YER112W	LSM4	51	39.583	ENSANAG00000034659	LSM4	60	40.860	Aotus_nancymaae
YER112W	LSM4	52	40.206	ENSACLG00000022738	lsm4	56	40.860	Astatotilapia_calliptera
YER112W	LSM4	51	41.053	ENSAMXG00000016932	lsm4	58	40.860	Astyanax_mexicanus
YER112W	LSM4	51	39.583	ENSBTAG00000008578	LSM4	60	40.860	Bos_taurus
YER112W	LSM4	50	37.234	WBGene00003078	lsm-4	67	35.484	Caenorhabditis_elegans
YER112W	LSM4	51	39.583	ENSCJAG00000014171	LSM4	60	40.860	Callithrix_jacchus
YER112W	LSM4	50	40.860	ENSCAFG00000014900	LSM4	54	40.860	Canis_familiaris
YER112W	LSM4	51	39.583	ENSCAFG00020012137	LSM4	60	40.860	Canis_lupus_dingo
YER112W	LSM4	51	38.947	ENSCHIG00000010928	LSM4	54	40.217	Capra_hircus
YER112W	LSM4	51	39.583	ENSCCAG00000036308	LSM4	60	40.860	Cebus_capucinus
YER112W	LSM4	51	39.583	ENSCATG00000029311	LSM4	80	43.636	Cercocebus_atys
YER112W	LSM4	51	39.583	ENSCLAG00000010828	LSM4	60	40.860	Chinchilla_lanigera
YER112W	LSM4	51	39.583	ENSCSAG00000005370	LSM4	60	40.860	Chlorocebus_sabaeus
YER112W	LSM4	51	40.625	ENSCPBG00000012925	LSM4	60	40.860	Chrysemys_picta_bellii
YER112W	LSM4	51	39.583	ENSCANG00000043686	LSM4	59	52.381	Colobus_angolensis_palliatus
YER112W	LSM4	51	41.053	ENSCSEG00000016127	lsm4	58	40.860	Cynoglossus_semilaevis
YER112W	LSM4	51	41.053	ENSCVAG00000010601	lsm4	58	40.860	Cyprinodon_variegatus
YER112W	LSM4	52	40.206	ENSDARG00000023852	lsm4	58	40.860	Danio_rerio
YER112W	LSM4	51	39.583	ENSDORG00000024225	Lsm4	60	40.860	Dipodomys_ordii
YER112W	LSM4	55	37.500	FBgn0032240	CG17768	53	38.462	Drosophila_melanogaster
YER112W	LSM4	50	35.106	ENSEBUG00000003639	-	55	34.409	Eptatretus_burgeri
YER112W	LSM4	51	39.583	ENSELUG00000012821	lsm4	62	40.217	Esox_lucius
YER112W	LSM4	51	39.583	ENSFCAG00000040580	LSM4	60	40.860	Felis_catus
YER112W	LSM4	51	40.000	ENSFALG00000009478	LSM4	59	40.217	Ficedula_albicollis
YER112W	LSM4	51	38.947	ENSFDAG00000010124	LSM4	59	40.217	Fukomys_damarensis
YER112W	LSM4	51	39.583	ENSGMOG00000007729	lsm4	56	40.217	Gadus_morhua
YER112W	LSM4	51	40.625	ENSGALG00000003385	LSM4	60	40.860	Gallus_gallus
YER112W	LSM4	56	39.423	ENSGACG00000008140	lsm4	55	40.860	Gasterosteus_aculeatus
YER112W	LSM4	51	40.625	ENSGAGG00000017812	LSM4	60	40.860	Gopherus_agassizii
YER112W	LSM4	50	41.935	ENSGGOG00000012914	-	61	52.381	Gorilla_gorilla
YER112W	LSM4	52	39.175	ENSHGLG00000006568	LSM4	60	40.860	Heterocephalus_glaber_female
YER112W	LSM4	51	40.000	ENSHGLG00100007894	LSM4	89	40.860	Heterocephalus_glaber_male
YER112W	LSM4	52	40.206	ENSHCOG00000008819	lsm4	58	40.860	Hippocampus_comes
YER112W	LSM4	52	40.206	ENSIPUG00000005368	Lsm4	58	40.860	Ictalurus_punctatus
YER112W	LSM4	51	39.583	ENSSTOG00000016494	LSM4	60	40.860	Ictidomys_tridecemlineatus
YER112W	LSM4	51	41.053	ENSKMAG00000005073	lsm4	58	40.860	Kryptolebias_marmoratus
YER112W	LSM4	51	41.053	ENSLBEG00000027930	lsm4	56	40.860	Labrus_bergylta
YER112W	LSM4	52	40.206	ENSLACG00000015861	LSM4	59	40.860	Latimeria_chalumnae
YER112W	LSM4	51	41.053	ENSLOCG00000002025	lsm4	59	40.860	Lepisosteus_oculatus
YER112W	LSM4	51	39.583	ENSMFAG00000031194	LSM4	59	52.381	Macaca_fascicularis
YER112W	LSM4	51	39.583	ENSMMUG00000004405	LSM4	60	40.860	Macaca_mulatta
YER112W	LSM4	51	39.583	ENSMNEG00000042899	LSM4	59	52.381	Macaca_nemestrina
YER112W	LSM4	51	39.583	ENSMLEG00000027948	LSM4	80	43.636	Mandrillus_leucophaeus
YER112W	LSM4	55	38.235	ENSMAMG00000006190	lsm4	58	40.860	Mastacembelus_armatus
YER112W	LSM4	52	40.206	ENSMZEG00005016420	lsm4	57	40.860	Maylandia_zebra
YER112W	LSM4	51	39.583	ENSMGAG00000004976	LSM4	59	40.217	Meleagris_gallopavo
YER112W	LSM4	52	39.175	ENSMICG00000000222	LSM4	60	40.860	Microcebus_murinus
YER112W	LSM4	51	41.053	ENSMALG00000018159	lsm4	58	40.860	Monopterus_albus
YER112W	LSM4	51	39.583	ENSMPUG00000015589	LSM4	60	40.860	Mustela_putorius_furo
YER112W	LSM4	51	38.947	ENSMLUG00000004010	LSM4	59	40.217	Myotis_lucifugus
YER112W	LSM4	51	39.583	ENSNBRG00000022150	lsm4	51	40.217	Neolamprologus_brichardi
YER112W	LSM4	51	39.583	ENSODEG00000020549	-	60	40.860	Octodon_degus
YER112W	LSM4	52	40.206	ENSONIG00000012724	lsm4	56	40.860	Oreochromis_niloticus
YER112W	LSM4	50	37.755	ENSOANG00000007434	LSM4	74	37.500	Ornithorhynchus_anatinus
YER112W	LSM4	52	40.206	ENSORLG00000008391	lsm4	58	40.860	Oryzias_latipes
YER112W	LSM4	52	40.206	ENSORLG00020014829	lsm4	58	40.860	Oryzias_latipes_hni
YER112W	LSM4	52	40.206	ENSORLG00015010205	lsm4	58	40.860	Oryzias_latipes_hsok
YER112W	LSM4	52	40.206	ENSOMEG00000003606	lsm4	58	40.860	Oryzias_melastigma
YER112W	LSM4	51	38.542	ENSOGAG00000027992	LSM4	56	40.217	Otolemur_garnettii
YER112W	LSM4	50	41.935	ENSPPAG00000044045	-	60	40.860	Pan_paniscus
YER112W	LSM4	51	39.583	ENSPPRG00000018264	LSM4	60	40.860	Panthera_pardus
YER112W	LSM4	51	38.947	ENSPTIG00000006306	LSM4	59	40.217	Panthera_tigris_altaica
YER112W	LSM4	50	41.935	ENSPTRG00000031470	LSM4	60	40.860	Pan_troglodytes
YER112W	LSM4	51	39.583	ENSPANG00000014399	LSM4	80	43.636	Papio_anubis
YER112W	LSM4	52	40.206	ENSPKIG00000006154	lsm4	59	40.860	Paramormyrops_kingsleyae
YER112W	LSM4	51	40.000	ENSPSIG00000012358	LSM4	60	40.217	Pelodiscus_sinensis
YER112W	LSM4	52	40.206	ENSPLAG00000016267	lsm4	58	40.860	Poecilia_latipinna
YER112W	LSM4	52	40.206	ENSPMEG00000016378	lsm4	59	40.217	Poecilia_mexicana
YER112W	LSM4	51	39.583	ENSPPYG00000009736	LSM4	60	40.860	Pongo_abelii
YER112W	LSM4	52	39.175	ENSPCOG00000019837	LSM4	60	40.860	Propithecus_coquereli
YER112W	LSM4	51	39.583	ENSPVAG00000015383	LSM4	60	40.860	Pteropus_vampyrus
YER112W	LSM4	52	40.206	ENSPNYG00000016794	lsm4	57	40.860	Pundamilia_nyererei
YER112W	LSM4	51	39.583	ENSPNAG00000016598	lsm4	61	40.217	Pygocentrus_nattereri
YER112W	LSM4	51	39.583	ENSRBIG00000024717	LSM4	59	52.381	Rhinopithecus_bieti
YER112W	LSM4	51	39.583	ENSRROG00000045706	LSM4	59	52.381	Rhinopithecus_roxellana
YER112W	LSM4	51	40.625	ENSSHAG00000011559	LSM4	60	40.860	Sarcophilus_harrisii
YER112W	LSM4	52	40.206	ENSSFOG00015021067	lsm4	59	40.860	Scleropages_formosus
YER112W	LSM4	51	41.053	ENSSMAG00000021020	lsm4	55	40.860	Scophthalmus_maximus
YER112W	LSM4	52	40.206	ENSSDUG00000009588	lsm4	50	40.860	Seriola_dumerili
YER112W	LSM4	51	39.583	ENSSPUG00000010166	LSM4	53	40.217	Sphenodon_punctatus
YER112W	LSM4	51	41.053	ENSSPAG00000011615	lsm4	55	40.860	Stegastes_partitus
YER112W	LSM4	51	39.583	ENSSSCG00000034314	LSM4	60	40.860	Sus_scrofa
YER112W	LSM4	52	40.206	ENSTRUG00000021737	lsm4	58	40.860	Takifugu_rubripes
YER112W	LSM4	52	40.206	ENSTNIG00000010191	lsm4	58	40.860	Tetraodon_nigroviridis
YER112W	LSM4	50	40.860	ENSUAMG00000000665	LSM4	69	40.860	Ursus_americanus
YER112W	LSM4	51	39.583	ENSUMAG00000009013	LSM4	60	40.860	Ursus_maritimus
YER112W	LSM4	52	40.206	ENSXETG00000024933	lsm4	60	40.860	Xenopus_tropicalis