EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YER146W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Lsm (Like Sm) protein%3B part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay%3B nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA%2C snoRNA%2C and rRNA
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 282 bases
Position: chrV:462585-462866
Accession: S000000948
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YER146W_mRNA	LSM	PF01423.22	3.6e-20	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	MS & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YER146W_mRNA	-	282	-	YER146W_mRNA	93 (aa)	-	P40089

Gene Model

Click here to download YER146W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YER146W's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YER146W	-	55	35.294	YOR159C	SME1	54	35.294
YER146W	-	57	35.849	YFL017W-A	SMX2	66	35.849

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YER146W	-	88	51.220	ENSG00000106355	LSM5	94	52.381	Homo_sapiens
YER146W	-	83	46.753	ENSAPOG00000011743	LSM5	94	49.206	Acanthochromis_polyacanthus
YER146W	-	88	48.780	ENSAPOG00000020779	LSM5	88	48.750	Acanthochromis_polyacanthus
YER146W	-	88	51.220	ENSAMEG00000006700	LSM5	85	51.220	Ailuropoda_melanoleuca
YER146W	-	88	48.780	ENSAOCG00000001636	lsm5	85	48.780	Amphiprion_ocellaris
YER146W	-	88	48.780	ENSAPEG00000008151	lsm5	85	48.780	Amphiprion_percula
YER146W	-	68	49.206	ENSAPEG00000008201	lsm5	94	49.206	Amphiprion_percula
YER146W	-	84	46.154	ENSATEG00000020470	lsm5	54	46.154	Anabas_testudineus
YER146W	-	83	50.649	ENSAPLG00000008171	LSM5	97	50.649	Anas_platyrhynchos
YER146W	-	88	48.780	ENSANAG00000024192	-	80	48.780	Aotus_nancymaae
YER146W	-	88	51.220	ENSANAG00000034409	-	85	51.220	Aotus_nancymaae
YER146W	-	68	47.619	ENSANAG00000037758	-	72	47.619	Aotus_nancymaae
YER146W	-	88	48.780	ENSACLG00000012891	lsm5	88	48.780	Astatotilapia_calliptera
YER146W	-	88	36.471	ENSAMXG00000035543	lsm5	85	36.471	Astyanax_mexicanus
YER146W	-	60	39.286	ENSBTAG00000052014	-	72	39.286	Bos_taurus
YER146W	-	88	51.220	ENSBTAG00000002332	LSM5	85	51.220	Bos_taurus
YER146W	-	87	44.444	WBGene00003079	lsm-5	84	44.444	Caenorhabditis_elegans
YER146W	-	86	42.500	ENSCJAG00000005678	-	84	42.500	Callithrix_jacchus
YER146W	-	88	51.220	ENSCJAG00000047379	LSM5	66	50.000	Callithrix_jacchus
YER146W	-	88	51.220	ENSCAFG00000019261	-	85	51.220	Canis_familiaris
YER146W	-	88	51.220	ENSCAFG00020004946	LSM5	85	51.220	Canis_lupus_dingo
YER146W	-	88	52.439	ENSCHIG00000004079	-	84	52.439	Capra_hircus
YER146W	-	88	51.220	ENSCHIG00000024539	LSM5	85	51.220	Capra_hircus
YER146W	-	56	36.538	ENSCHIG00000021428	-	80	36.000	Capra_hircus
YER146W	-	88	51.220	ENSTSYG00000006449	-	85	51.220	Carlito_syrichta
YER146W	-	85	39.241	ENSTSYG00000026530	-	78	39.241	Carlito_syrichta
YER146W	-	88	39.024	ENSTSYG00000036637	-	81	39.024	Carlito_syrichta
YER146W	-	88	45.122	ENSTSYG00000028728	-	84	45.122	Carlito_syrichta
YER146W	-	75	47.143	ENSCAPG00000006980	LSM5	87	47.143	Cavia_aperea
YER146W	-	88	51.220	ENSCPOG00000036386	LSM5	85	51.220	Cavia_porcellus
YER146W	-	88	51.220	ENSCCAG00000037808	-	85	51.220	Cebus_capucinus
YER146W	-	88	50.000	ENSCCAG00000000821	-	85	50.000	Cebus_capucinus
YER146W	-	70	49.231	ENSCCAG00000032792	-	75	49.231	Cebus_capucinus
YER146W	-	82	40.260	ENSCCAG00000037334	-	94	40.260	Cebus_capucinus
YER146W	-	88	50.000	ENSCCAG00000032123	-	85	50.000	Cebus_capucinus
YER146W	-	88	43.902	ENSCATG00000014790	-	79	54.348	Cercocebus_atys
YER146W	-	88	51.220	ENSCATG00000040218	LSM5	94	52.381	Cercocebus_atys
YER146W	-	88	42.683	ENSCLAG00000005062	-	76	42.683	Chinchilla_lanigera
YER146W	-	88	51.220	ENSCLAG00000000202	LSM5	85	51.220	Chinchilla_lanigera
YER146W	-	56	53.846	ENSCHOG00000005335	LSM5	68	53.846	Choloepus_hoffmanni
YER146W	-	88	51.220	ENSCPBG00000013685	LSM5	85	51.220	Chrysemys_picta_bellii
YER146W	-	88	46.341	ENSCING00000020625	-	87	46.341	Ciona_intestinalis
YER146W	-	88	46.341	ENSCSAVG00000001439	-	88	46.341	Ciona_savignyi
YER146W	-	88	51.220	ENSCANG00000039909	LSM5	94	52.381	Colobus_angolensis_palliatus
YER146W	-	88	51.220	ENSCGRG00001015461	Lsm5	85	51.220	Cricetulus_griseus_chok1gshd
YER146W	-	82	50.000	ENSCGRG00000007677	Lsm5	95	50.000	Cricetulus_griseus_crigri
YER146W	-	88	48.780	ENSCVAG00000004262	lsm5	85	48.780	Cyprinodon_variegatus
YER146W	-	88	48.780	ENSDARG00000071573	lsm5	94	49.206	Danio_rerio
YER146W	-	89	42.169	ENSDNOG00000049495	-	86	42.169	Dasypus_novemcinctus
YER146W	-	88	51.220	ENSDNOG00000034958	LSM5	85	51.220	Dasypus_novemcinctus
YER146W	-	88	51.220	ENSDORG00000009422	Lsm5	85	51.220	Dipodomys_ordii
YER146W	-	87	45.679	FBgn0035675	CG6610	84	45.679	Drosophila_melanogaster
YER146W	-	88	37.805	ENSETEG00000010651	-	84	37.805	Echinops_telfairi
YER146W	-	92	37.209	ENSETEG00000001469	-	87	37.209	Echinops_telfairi
YER146W	-	81	36.000	ENSETEG00000016074	-	92	36.000	Echinops_telfairi
YER146W	-	88	51.220	ENSETEG00000018068	LSM5	85	51.220	Echinops_telfairi
YER146W	-	88	43.902	ENSEBUG00000008540	lsm5	85	43.902	Eptatretus_burgeri
YER146W	-	88	51.220	ENSEASG00005003500	LSM5	85	51.220	Equus_asinus_asinus
YER146W	-	88	42.683	ENSECAG00000018445	LSM5	83	42.683	Equus_caballus
YER146W	-	63	50.847	ENSEEUG00000004102	LSM5	90	50.847	Erinaceus_europaeus
YER146W	-	88	48.780	ENSELUG00000007792	lsm5	85	48.780	Esox_lucius
YER146W	-	88	51.220	ENSFCAG00000000230	LSM5	85	51.220	Felis_catus
YER146W	-	83	50.649	ENSFALG00000001892	LSM5	87	50.649	Ficedula_albicollis
YER146W	-	83	35.065	ENSFDAG00000008685	-	85	35.065	Fukomys_damarensis
YER146W	-	88	51.220	ENSFDAG00000008767	LSM5	85	51.220	Fukomys_damarensis
YER146W	-	83	42.857	ENSFHEG00000004011	lsm5	77	42.857	Fundulus_heteroclitus
YER146W	-	88	48.780	ENSGMOG00000018235	lsm5	86	48.780	Gadus_morhua
YER146W	-	88	51.220	ENSGALG00000041625	LSM5	85	51.220	Gallus_gallus
YER146W	-	68	49.206	ENSGAFG00000016824	lsm5	94	49.206	Gambusia_affinis
YER146W	-	88	48.780	ENSGACG00000005528	lsm5	85	48.780	Gasterosteus_aculeatus
YER146W	-	88	51.220	ENSGAGG00000015593	LSM5	85	51.220	Gopherus_agassizii
YER146W	-	88	51.220	ENSGGOG00000043469	LSM5	85	51.220	Gorilla_gorilla
YER146W	-	88	48.780	ENSHBUG00000013773	lsm5	88	48.780	Haplochromis_burtoni
YER146W	-	88	51.220	ENSHGLG00000011765	LSM5	85	51.220	Heterocephalus_glaber_female
YER146W	-	89	49.398	ENSHGLG00100015610	LSM5	87	49.398	Heterocephalus_glaber_male
YER146W	-	88	48.780	ENSIPUG00000021095	LSM5	85	48.780	Ictalurus_punctatus
YER146W	-	85	49.367	ENSSTOG00000033886	-	83	49.367	Ictidomys_tridecemlineatus
YER146W	-	88	51.220	ENSSTOG00000012662	LSM5	85	51.220	Ictidomys_tridecemlineatus
YER146W	-	72	47.761	ENSJJAG00000016144	-	75	47.761	Jaculus_jaculus
YER146W	-	80	48.649	ENSJJAG00000004475	-	87	48.649	Jaculus_jaculus
YER146W	-	88	51.220	ENSJJAG00000012145	-	85	51.220	Jaculus_jaculus
YER146W	-	88	47.561	ENSKMAG00000021861	lsm5	85	47.561	Kryptolebias_marmoratus
YER146W	-	84	46.154	ENSLBEG00000009235	LSM5	57	46.154	Labrus_bergylta
YER146W	-	88	48.780	ENSLACG00000022448	LSM5	85	48.780	Latimeria_chalumnae
YER146W	-	88	48.780	ENSLOCG00000012903	lsm5	85	48.780	Lepisosteus_oculatus
YER146W	-	90	36.905	ENSLAFG00000027938	-	85	36.905	Loxodonta_africana
YER146W	-	88	51.220	ENSLAFG00000029579	LSM5	85	51.220	Loxodonta_africana
YER146W	-	88	50.000	ENSMFAG00000030152	-	85	50.000	Macaca_fascicularis
YER146W	-	88	51.220	ENSMFAG00000038508	LSM5	85	51.220	Macaca_fascicularis
YER146W	-	88	50.000	ENSMMUG00000030131	-	85	50.000	Macaca_mulatta
YER146W	-	88	47.561	ENSMMUG00000039822	-	84	47.561	Macaca_mulatta
YER146W	-	88	51.220	ENSMNEG00000015331	LSM5	94	52.381	Macaca_nemestrina
YER146W	-	88	50.000	ENSMNEG00000037935	-	85	50.000	Macaca_nemestrina
YER146W	-	88	51.220	ENSMLEG00000024945	LSM5	85	51.220	Mandrillus_leucophaeus
YER146W	-	88	46.341	ENSMLEG00000034037	-	85	46.341	Mandrillus_leucophaeus
YER146W	-	88	45.122	ENSMAMG00000012869	lsm5	85	45.122	Mastacembelus_armatus
YER146W	-	88	48.780	ENSMZEG00005019554	lsm5	88	48.780	Maylandia_zebra
YER146W	-	88	51.220	ENSMGAG00000012117	LSM5	85	51.220	Meleagris_gallopavo
YER146W	-	88	51.220	ENSMAUG00000012222	Lsm5	85	51.220	Mesocricetus_auratus
YER146W	-	88	50.000	ENSMAUG00000008132	-	85	50.000	Mesocricetus_auratus
YER146W	-	88	51.220	ENSMICG00000005353	LSM5	85	51.220	Microcebus_murinus
YER146W	-	80	44.595	ENSMICG00000033928	-	88	44.595	Microcebus_murinus
YER146W	-	88	51.220	ENSMOCG00000012018	Lsm5	85	51.220	Microtus_ochrogaster
YER146W	-	83	48.052	ENSMMOG00000004026	lsm5	83	48.052	Mola_mola
YER146W	-	68	52.381	ENSMODG00000013274	-	94	52.381	Monodelphis_domestica
YER146W	-	68	46.032	ENSMALG00000010343	lsm5	94	46.032	Monopterus_albus
YER146W	-	88	51.220	MGP_CAROLIEiJ_G0028421	Lsm5	86	52.778	Mus_caroli
YER146W	-	88	51.220	ENSMUSG00000091625	Lsm5	86	52.778	Mus_musculus
YER146W	-	88	51.220	MGP_PahariEiJ_G0022171	Lsm5	86	52.778	Mus_pahari
YER146W	-	88	51.220	MGP_SPRETEiJ_G0029423	Lsm5	86	52.778	Mus_spretus
YER146W	-	88	51.220	ENSMLUG00000017028	LSM5	85	51.220	Myotis_lucifugus
YER146W	-	88	39.024	ENSNGAG00000022569	-	81	39.024	Nannospalax_galili
YER146W	-	88	45.238	ENSNGAG00000017707	-	84	45.238	Nannospalax_galili
YER146W	-	88	51.220	ENSNGAG00000024142	Lsm5	85	51.220	Nannospalax_galili
YER146W	-	59	54.545	ENSNBRG00000011386	lsm5	67	54.545	Neolamprologus_brichardi
YER146W	-	88	51.220	ENSNLEG00000015268	LSM5	85	51.220	Nomascus_leucogenys
YER146W	-	82	50.000	ENSOPRG00000002443	LSM5	95	50.000	Ochotona_princeps
YER146W	-	88	51.220	ENSODEG00000008258	-	85	51.220	Octodon_degus
YER146W	-	88	51.220	ENSODEG00000019072	-	85	51.220	Octodon_degus
YER146W	-	86	42.500	ENSOANG00000014540	-	100	42.500	Ornithorhynchus_anatinus
YER146W	-	88	51.220	ENSOCUG00000029043	LSM5	85	51.220	Oryctolagus_cuniculus
YER146W	-	88	46.341	ENSORLG00020003019	lsm5	79	46.914	Oryzias_latipes_hni
YER146W	-	88	48.780	ENSORLG00015003338	lsm5	85	48.780	Oryzias_latipes_hsok
YER146W	-	88	48.780	ENSOMEG00000001078	lsm5	85	48.780	Oryzias_melastigma
YER146W	-	88	51.220	ENSOGAG00000013892	LSM5	85	51.220	Otolemur_garnettii
YER146W	-	88	51.220	ENSOARG00000006944	LSM5	85	51.220	Ovis_aries
YER146W	-	88	51.220	ENSPPAG00000003697	-	85	51.220	Pan_paniscus
YER146W	-	88	51.220	ENSPPRG00000002550	LSM5	85	51.220	Panthera_pardus
YER146W	-	88	51.220	ENSPTIG00000015604	LSM5	85	51.220	Panthera_tigris_altaica
YER146W	-	88	51.220	ENSPTRG00000019057	LSM5	85	51.220	Pan_troglodytes
YER146W	-	88	39.024	ENSPTRG00000049488	-	84	42.683	Pan_troglodytes
YER146W	-	88	51.220	ENSPANG00000032179	-	85	51.220	Papio_anubis
YER146W	-	88	48.780	ENSPANG00000033477	-	85	48.780	Papio_anubis
YER146W	-	88	47.561	ENSPANG00000032538	-	84	47.561	Papio_anubis
YER146W	-	88	48.780	ENSPKIG00000011910	lsm5	85	48.780	Paramormyrops_kingsleyae
YER146W	-	83	50.649	ENSPSIG00000014796	LSM5	97	50.649	Pelodiscus_sinensis
YER146W	-	68	49.206	ENSPMGG00000011699	lsm5	94	49.206	Periophthalmus_magnuspinnatus
YER146W	-	85	41.772	ENSPEMG00000022375	-	79	41.772	Peromyscus_maniculatus_bairdii
YER146W	-	88	48.780	ENSPFOG00000001433	lsm5	85	48.780	Poecilia_formosa
YER146W	-	88	48.780	ENSPLAG00000009665	lsm5	85	48.780	Poecilia_latipinna
YER146W	-	88	48.780	ENSPMEG00000022265	lsm5	85	48.780	Poecilia_mexicana
YER146W	-	68	49.206	ENSPREG00000022452	lsm5	94	49.206	Poecilia_reticulata
YER146W	-	88	50.000	ENSPPYG00000017661	LSM5	85	50.000	Pongo_abelii
YER146W	-	82	48.684	ENSPCAG00000013740	LSM5	88	48.684	Procavia_capensis
YER146W	-	88	51.220	ENSPVAG00000009786	LSM5	85	51.220	Pteropus_vampyrus
YER146W	-	88	48.780	ENSPNYG00000022236	lsm5	88	48.780	Pundamilia_nyererei
YER146W	-	88	48.780	ENSPNAG00000001887	lsm5	85	48.780	Pygocentrus_nattereri
YER146W	-	91	46.512	ENSRNOG00000027305	AABR07065089.1	88	46.512	Rattus_norvegicus
YER146W	-	88	51.220	ENSRNOG00000042126	Lsm5	85	51.220	Rattus_norvegicus
YER146W	-	88	51.220	ENSRBIG00000030714	-	85	51.220	Rhinopithecus_bieti
YER146W	-	88	51.220	ENSRBIG00000027803	-	94	52.381	Rhinopithecus_bieti
YER146W	-	88	51.220	ENSRBIG00000030340	-	85	51.220	Rhinopithecus_bieti
YER146W	-	88	52.439	ENSRBIG00000024431	-	85	52.439	Rhinopithecus_bieti
YER146W	-	88	51.220	ENSRROG00000042782	-	94	52.381	Rhinopithecus_roxellana
YER146W	-	88	51.220	ENSRROG00000023884	-	85	51.220	Rhinopithecus_roxellana
YER146W	-	88	51.220	ENSRROG00000004655	-	85	51.220	Rhinopithecus_roxellana
YER146W	-	88	51.220	ENSSBOG00000012312	LSM5	85	51.220	Saimiri_boliviensis_boliviensis
YER146W	-	70	49.231	ENSSBOG00000034794	-	74	49.231	Saimiri_boliviensis_boliviensis
YER146W	-	90	50.000	ENSSBOG00000019124	-	87	50.000	Saimiri_boliviensis_boliviensis
YER146W	-	88	48.780	ENSSFOG00015010099	lsm5	85	48.780	Scleropages_formosus
YER146W	-	68	49.206	ENSSDUG00000010762	lsm5	94	49.206	Seriola_dumerili
YER146W	-	88	48.780	ENSSLDG00000025242	lsm5	85	48.780	Seriola_lalandi_dorsalis
YER146W	-	87	49.383	ENSSLDG00000008014	-	90	49.383	Seriola_lalandi_dorsalis
YER146W	-	88	50.000	ENSSPUG00000002690	LSM5	94	50.794	Sphenodon_punctatus
YER146W	-	88	51.220	ENSSSCG00000026064	-	85	51.220	Sus_scrofa
YER146W	-	88	51.220	ENSTGUG00000017539	LSM5	85	51.220	Taeniopygia_guttata
YER146W	-	83	41.463	ENSTRUG00000017749	lsm5	60	41.463	Takifugu_rubripes
YER146W	-	88	47.561	ENSTNIG00000008695	lsm5	88	47.561	Tetraodon_nigroviridis
YER146W	-	88	51.220	ENSTBEG00000004876	LSM5	85	51.220	Tupaia_belangeri
YER146W	-	88	51.220	ENSTTRG00000004237	LSM5	85	51.220	Tursiops_truncatus
YER146W	-	88	51.220	ENSUMAG00000002625	LSM5	55	51.220	Ursus_maritimus
YER146W	-	88	51.220	ENSVPAG00000009985	LSM5	85	51.220	Vicugna_pacos
YER146W	-	88	51.220	ENSVVUG00000021311	LSM5	85	51.220	Vulpes_vulpes
YER146W	-	83	48.052	ENSXETG00000026465	lsm5	88	48.052	Xenopus_tropicalis
YER146W	-	68	49.206	ENSXCOG00000015348	lsm5	94	49.206	Xiphophorus_couchianus
YER146W	-	88	48.780	ENSXMAG00000029988	lsm5	85	48.780	Xiphophorus_maculatus