EuRBPDB

Description

Ensembl ID: YER165W (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1734
Position: chrV:510373-512106
Accession: S000000967
RBP type: canonical RBP
Summary: Poly(A) binding protein%3B part of the 3'-end RNA-processing complex%2C mediates interactions between the 5' cap structure and the 3' mRNA poly(A) tail%2C involved in control of poly(A) tail length%2C interacts with translation factor eIF-4G%3B stimulates%2C but is not required for the deadenylation activity of the Pan2p-Pan3p poly(A)-ribonuclease complex

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YER165W_mRNA	PABP	PF00658.18	4.3e-19	1	1
YER165W_mRNA	RRM_5	PF13893.6	1e-10	1	2
YER165W_mRNA	RRM_5	PF13893.6	1e-10	2	2
YER165W_mRNA	RRM_1	PF00076.22	5.9e-87	1	4
YER165W_mRNA	RRM_1	PF00076.22	5.9e-87	2	4
YER165W_mRNA	RRM_1	PF00076.22	5.9e-87	3	4
YER165W_mRNA	RRM_1	PF00076.22	5.9e-87	4	4

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl.PAR_CL & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YER165W_mRNA	-	1734	-	YER165W_mRNA	577 (aa)	-	P04147

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YER165W	-	63	30.946	YFR023W	-	60	30.946

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YER165W	-	79	48.113	WBGene00003903	pab-2	96	41.802	Caenorhabditis_elegans
YER165W	-	65	55.823	ENSCING00000024279	-	95	55.823	Ciona_intestinalis
YER165W	-	66	44.974	FBgn0035016	CG4612	73	44.615	Drosophila_melanogaster
YER165W	-	72	51.748	FBgn0265297	pAbp	61	54.663	Drosophila_melanogaster
YER165W	-	55	54.167	ENSIPUG00000024435	-	84	54.167	Ictalurus_punctatus