EuRBPDB

Description

Ensembl ID: YER172C (Gene tree)
Gene ID: -
Gene Symbol: BRR2
Alias: PRP44|RSS1|SLT22|SNU246
Full Name: RNA-dependent ATPase RNA helicase (DEIH box)%3B required for disruption of U4/U6 base-pairing in native snRNPs to activate the spliceosome for catalysis%3B homologous to human U5-200kD
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 6492 bases
Position: chrV:529530-536021
Accession: S000000974
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YER172C_mRNA	ResIII	PF04851.15	2.4e-19	1	1
YER172C_mRNA	DEAD	PF00270.29	1.4e-46	1	2
YER172C_mRNA	DEAD	PF00270.29	1.4e-46	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YER172C_mRNA	-	6492	-	YER172C_mRNA	2163 (aa)	-	P32639

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YER172C	BRR2	77	34.105	YGR271W	-	87	34.146
YER172C	BRR2	60	30.261	YGL251C	HFM1	58	30.261

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YER172C	BRR2	95	38.075	WBGene00012896	snrp-200	99	36.749	Caenorhabditis_elegans