EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: YFL001W (Gene tree)
Gene ID: -
Gene Symbol: DEG1
Alias: HRM3|PUS3
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 1329
Position: chrVI:147131-148459
Accession: S000001895
RBP type: canonical RBP
Summary: tRNA:pseudouridine synthase%3B introduces pseudouridines at position 38 or 39 in tRNA%3B also responsible for pseudouracil modification of some mRNAs%3B important for maintenance of translation efficiency and normal cell growth%2C localizes to both the nucleus and cytoplasm%3B non-essential for viability

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YFL001W_mRNA	PseudoU_synth_1	PF01416.20	2.6e-31	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
21124907	A screen for RNA binding proteins in yeast indicates dual functions for many enzymes	ProtoArray & yeast	2010 Nov 11	DOI: 10.1371/journal.pone.0015499

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YFL001W_mRNA	-	1329	-	YFL001W_mRNA	442 (aa)	-	P31115

Gene Model

Click here to download YFL001W's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YFL001W's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YFL001W	DEG1	71	43.284	ENSG00000110060	PUS3	93	39.881	Homo_sapiens
YFL001W	DEG1	80	37.766	ENSAPOG00000019483	pus3	81	37.766	Acanthochromis_polyacanthus
YFL001W	DEG1	71	43.582	ENSAMEG00000000144	PUS3	67	43.582	Ailuropoda_melanoleuca
YFL001W	DEG1	63	39.088	ENSACIG00000024479	pus3	98	39.088	Amphilophus_citrinellus
YFL001W	DEG1	71	39.941	ENSAOCG00000006589	pus3	68	39.941	Amphiprion_ocellaris
YFL001W	DEG1	71	39.941	ENSAPEG00000014617	pus3	68	39.941	Amphiprion_percula
YFL001W	DEG1	72	39.884	ENSATEG00000022731	pus3	73	39.884	Anabas_testudineus
YFL001W	DEG1	78	40.054	ENSAPLG00000013285	PUS3	83	40.054	Anas_platyrhynchos
YFL001W	DEG1	78	42.192	ENSACAG00000000186	PUS3	79	42.192	Anolis_carolinensis
YFL001W	DEG1	71	43.976	ENSANAG00000035614	PUS3	67	43.976	Aotus_nancymaae
YFL001W	DEG1	64	41.311	ENSACLG00000007356	pus3	63	41.311	Astatotilapia_calliptera
YFL001W	DEG1	65	44.300	ENSAMXG00000019534	pus3	71	39.323	Astyanax_mexicanus
YFL001W	DEG1	71	43.582	ENSBTAG00000014339	PUS3	67	43.582	Bos_taurus
YFL001W	DEG1	79	34.933	WBGene00006473	tag-124	92	35.106	Caenorhabditis_elegans
YFL001W	DEG1	71	43.976	ENSCJAG00000046645	PUS3	67	43.976	Callithrix_jacchus
YFL001W	DEG1	71	43.114	ENSCAFG00000010534	PUS3	67	43.114	Canis_familiaris
YFL001W	DEG1	71	43.114	ENSCAFG00020010659	PUS3	67	43.114	Canis_lupus_dingo
YFL001W	DEG1	71	43.413	ENSCHIG00000012260	PUS3	67	43.413	Capra_hircus
YFL001W	DEG1	71	43.787	ENSTSYG00000014744	PUS3	67	43.787	Carlito_syrichta
YFL001W	DEG1	71	43.582	ENSCAPG00000012231	PUS3	67	43.582	Cavia_aperea
YFL001W	DEG1	71	43.582	ENSCPOG00000032587	PUS3	67	43.582	Cavia_porcellus
YFL001W	DEG1	71	43.675	ENSCCAG00000035999	PUS3	67	43.675	Cebus_capucinus
YFL001W	DEG1	71	43.881	ENSCATG00000043123	PUS3	67	43.881	Cercocebus_atys
YFL001W	DEG1	71	43.713	ENSCLAG00000014947	PUS3	67	43.713	Chinchilla_lanigera
YFL001W	DEG1	71	42.985	ENSCSAG00000002281	PUS3	67	43.284	Chlorocebus_sabaeus
YFL001W	DEG1	71	45.015	ENSCHOG00000008442	PUS3	85	45.015	Choloepus_hoffmanni
YFL001W	DEG1	74	31.818	ENSCING00000009062	-	71	31.818	Ciona_intestinalis
YFL001W	DEG1	78	32.143	ENSCSAVG00000002211	-	80	32.877	Ciona_savignyi
YFL001W	DEG1	89	39.059	ENSCANG00000038729	PUS3	86	38.824	Colobus_angolensis_palliatus
YFL001W	DEG1	71	44.012	ENSCGRG00001019842	Pus3	67	44.012	Cricetulus_griseus_chok1gshd
YFL001W	DEG1	71	44.012	ENSCGRG00000010155	Pus3	67	44.012	Cricetulus_griseus_crigri
YFL001W	DEG1	73	41.739	ENSCSEG00000007948	pus3	73	41.739	Cynoglossus_semilaevis
YFL001W	DEG1	64	43.464	ENSCVAG00000022150	pus3	63	43.464	Cyprinodon_variegatus
YFL001W	DEG1	67	41.562	ENSDARG00000028976	pus3	68	41.562	Danio_rerio
YFL001W	DEG1	71	45.428	ENSDNOG00000040719	PUS3	68	45.428	Dasypus_novemcinctus
YFL001W	DEG1	71	42.857	ENSDORG00000001819	Pus3	67	42.857	Dipodomys_ordii
YFL001W	DEG1	71	37.910	FBgn0034703	CG3045	66	37.910	Drosophila_melanogaster
YFL001W	DEG1	71	39.645	ENSETEG00000013067	PUS3	67	39.645	Echinops_telfairi
YFL001W	DEG1	71	44.012	ENSEASG00005023003	PUS3	67	44.012	Equus_asinus_asinus
YFL001W	DEG1	71	44.611	ENSECAG00000007581	PUS3	67	44.611	Equus_caballus
YFL001W	DEG1	71	43.713	ENSEEUG00000010543	PUS3	67	43.713	Erinaceus_europaeus
YFL001W	DEG1	74	39.286	ENSELUG00000004425	pus3	76	39.031	Esox_lucius
YFL001W	DEG1	78	41.240	ENSFCAG00000005340	PUS3	75	41.240	Felis_catus
YFL001W	DEG1	84	39.175	ENSFALG00000005159	PUS3	80	39.175	Ficedula_albicollis
YFL001W	DEG1	71	43.491	ENSFDAG00000020745	PUS3	67	43.491	Fukomys_damarensis
YFL001W	DEG1	72	42.241	ENSFHEG00000010984	pus3	68	42.241	Fundulus_heteroclitus
YFL001W	DEG1	80	37.766	ENSGMOG00000004534	pus3	82	37.766	Gadus_morhua
YFL001W	DEG1	79	41.755	ENSGALG00000000962	PUS3	80	41.755	Gallus_gallus
YFL001W	DEG1	69	40.557	ENSGAFG00000005615	pus3	63	44.371	Gambusia_affinis
YFL001W	DEG1	72	38.776	ENSGACG00000002125	pus3	72	39.710	Gasterosteus_aculeatus
YFL001W	DEG1	71	42.687	ENSGAGG00000000160	PUS3	67	42.687	Gopherus_agassizii
YFL001W	DEG1	74	43.103	ENSGGOG00000015047	PUS3	69	43.103	Gorilla_gorilla
YFL001W	DEG1	64	41.311	ENSHBUG00000016532	pus3	63	41.311	Haplochromis_burtoni
YFL001W	DEG1	78	35.544	ENSHGLG00000018861	-	79	35.544	Heterocephalus_glaber_female
YFL001W	DEG1	63	41.356	ENSHGLG00000015753	-	81	41.356	Heterocephalus_glaber_female
YFL001W	DEG1	83	37.179	ENSHGLG00000006599	-	77	37.179	Heterocephalus_glaber_female
YFL001W	DEG1	71	43.363	ENSHGLG00000000565	PUS3	67	43.363	Heterocephalus_glaber_female
YFL001W	DEG1	71	38.416	ENSHGLG00100007519	-	74	38.416	Heterocephalus_glaber_male
YFL001W	DEG1	71	41.420	ENSHGLG00100014825	-	66	41.420	Heterocephalus_glaber_male
YFL001W	DEG1	64	36.538	ENSHGLG00100011339	-	71	36.538	Heterocephalus_glaber_male
YFL001W	DEG1	67	41.479	ENSHGLG00100008656	-	96	41.479	Heterocephalus_glaber_male
YFL001W	DEG1	61	37.966	ENSHGLG00100002435	-	96	37.966	Heterocephalus_glaber_male
YFL001W	DEG1	80	38.400	ENSHCOG00000015705	pus3	80	38.400	Hippocampus_comes
YFL001W	DEG1	69	41.566	ENSIPUG00000000105	pus3	69	41.566	Ictalurus_punctatus
YFL001W	DEG1	71	45.210	ENSSTOG00000003721	PUS3	67	45.210	Ictidomys_tridecemlineatus
YFL001W	DEG1	65	43.831	ENSJJAG00000011306	Pus3	68	42.687	Jaculus_jaculus
YFL001W	DEG1	71	39.118	ENSKMAG00000016715	pus3	68	39.118	Kryptolebias_marmoratus
YFL001W	DEG1	81	36.997	ENSLBEG00000004143	pus3	80	36.997	Labrus_bergylta
YFL001W	DEG1	74	40.659	ENSLACG00000011161	PUS3	70	40.659	Latimeria_chalumnae
YFL001W	DEG1	64	42.157	ENSLOCG00000011922	pus3	66	41.667	Lepisosteus_oculatus
YFL001W	DEG1	71	45.562	ENSLAFG00000000535	PUS3	67	45.562	Loxodonta_africana
YFL001W	DEG1	71	44.179	ENSMFAG00000041002	PUS3	67	44.179	Macaca_fascicularis
YFL001W	DEG1	71	44.179	ENSMMUG00000041875	PUS3	67	44.179	Macaca_mulatta
YFL001W	DEG1	71	44.179	ENSMNEG00000045347	PUS3	67	44.179	Macaca_nemestrina
YFL001W	DEG1	71	43.881	ENSMLEG00000029053	PUS3	67	43.881	Mandrillus_leucophaeus
YFL001W	DEG1	61	42.955	ENSMAMG00000016741	pus3	74	40.286	Mastacembelus_armatus
YFL001W	DEG1	64	41.311	ENSMZEG00005015950	pus3	63	41.311	Maylandia_zebra
YFL001W	DEG1	79	41.803	ENSMGAG00000000851	PUS3	94	41.803	Meleagris_gallopavo
YFL001W	DEG1	71	44.012	ENSMAUG00000015873	Pus3	67	44.012	Mesocricetus_auratus
YFL001W	DEG1	71	44.144	ENSMICG00000032941	PUS3	67	44.012	Microcebus_murinus
YFL001W	DEG1	71	44.478	ENSMOCG00000004901	Pus3	67	44.478	Microtus_ochrogaster
YFL001W	DEG1	81	38.539	ENSMMOG00000013909	pus3	82	38.539	Mola_mola
YFL001W	DEG1	71	45.428	ENSMODG00000004222	PUS3	73	45.428	Monodelphis_domestica
YFL001W	DEG1	71	41.056	ENSMALG00000022420	pus3	71	41.056	Monopterus_albus
YFL001W	DEG1	71	42.515	MGP_CAROLIEiJ_G0031957	Pus3	97	41.720	Mus_caroli
YFL001W	DEG1	71	42.515	ENSMUSG00000032103	Pus3	97	41.720	Mus_musculus
YFL001W	DEG1	71	42.814	MGP_PahariEiJ_G0014822	Pus3	97	42.038	Mus_pahari
YFL001W	DEG1	71	42.814	MGP_SPRETEiJ_G0033081	Pus3	97	42.038	Mus_spretus
YFL001W	DEG1	71	43.881	ENSMPUG00000006568	PUS3	67	43.881	Mustela_putorius_furo
YFL001W	DEG1	71	44.311	ENSMLUG00000030636	PUS3	67	44.083	Myotis_lucifugus
YFL001W	DEG1	82	40.933	ENSNGAG00000013868	Pus3	78	40.933	Nannospalax_galili
YFL001W	DEG1	64	40.984	ENSNBRG00000015864	pus3	64	40.984	Neolamprologus_brichardi
YFL001W	DEG1	71	43.284	ENSNLEG00000007460	PUS3	67	43.284	Nomascus_leucogenys
YFL001W	DEG1	67	44.375	ENSMEUG00000014040	PUS3	64	44.375	Notamacropus_eugenii
YFL001W	DEG1	71	44.214	ENSOPRG00000007888	-	67	44.379	Ochotona_princeps
YFL001W	DEG1	71	43.713	ENSODEG00000004280	PUS3	67	43.713	Octodon_degus
YFL001W	DEG1	71	40.533	ENSONIG00000016224	pus3	74	40.356	Oreochromis_niloticus
YFL001W	DEG1	71	41.791	ENSOANG00000000406	PUS3	63	44.147	Ornithorhynchus_anatinus
YFL001W	DEG1	71	44.611	ENSOCUG00000004468	PUS3	63	44.611	Oryctolagus_cuniculus
YFL001W	DEG1	67	42.089	ENSORLG00000008445	pus3	66	42.089	Oryzias_latipes
YFL001W	DEG1	65	42.628	ENSORLG00020008847	pus3	65	42.628	Oryzias_latipes_hni
YFL001W	DEG1	65	42.675	ENSORLG00015007438	pus3	65	42.675	Oryzias_latipes_hsok
YFL001W	DEG1	72	40.286	ENSOMEG00000014321	pus3	73	40.286	Oryzias_melastigma
YFL001W	DEG1	71	45.133	ENSOGAG00000008913	PUS3	67	45.133	Otolemur_garnettii
YFL001W	DEG1	71	43.713	ENSOARG00000011870	PUS3	67	43.713	Ovis_aries
YFL001W	DEG1	71	43.582	ENSPPAG00000025809	PUS3	67	43.881	Pan_paniscus
YFL001W	DEG1	88	38.915	ENSPPRG00000005662	PUS3	86	38.915	Panthera_pardus
YFL001W	DEG1	78	41.240	ENSPTIG00000001192	PUS3	75	41.240	Panthera_tigris_altaica
YFL001W	DEG1	71	43.582	ENSPTRG00000004449	PUS3	67	43.881	Pan_troglodytes
YFL001W	DEG1	71	43.881	ENSPANG00000013782	PUS3	67	43.881	Papio_anubis
YFL001W	DEG1	70	40.426	ENSPKIG00000000646	pus3	70	40.426	Paramormyrops_kingsleyae
YFL001W	DEG1	71	43.155	ENSPSIG00000013961	PUS3	67	43.155	Pelodiscus_sinensis
YFL001W	DEG1	74	39.773	ENSPMGG00000000911	pus3	78	39.773	Periophthalmus_magnuspinnatus
YFL001W	DEG1	71	44.248	ENSPEMG00000009602	Pus3	67	44.248	Peromyscus_maniculatus_bairdii
YFL001W	DEG1	71	45.266	ENSPCIG00000010225	PUS3	72	45.266	Phascolarctos_cinereus
YFL001W	DEG1	71	42.136	ENSPFOG00000009447	pus3	75	42.136	Poecilia_formosa
YFL001W	DEG1	64	44.262	ENSPLAG00000023343	pus3	69	41.246	Poecilia_latipinna
YFL001W	DEG1	63	44.371	ENSPMEG00000009870	pus3	68	41.317	Poecilia_mexicana
YFL001W	DEG1	62	44.746	ENSPREG00000003179	pus3	56	44.746	Poecilia_reticulata
YFL001W	DEG1	71	43.582	ENSPPYG00000004039	PUS3	67	43.582	Pongo_abelii
YFL001W	DEG1	71	43.491	ENSPCAG00000000441	PUS3	67	43.491	Procavia_capensis
YFL001W	DEG1	73	43.567	ENSPCOG00000019330	PUS3	69	43.440	Propithecus_coquereli
YFL001W	DEG1	71	43.787	ENSPVAG00000002606	PUS3	67	43.787	Pteropus_vampyrus
YFL001W	DEG1	62	41.077	ENSPNYG00000019615	pus3	63	40.984	Pundamilia_nyererei
YFL001W	DEG1	68	42.025	ENSPNAG00000014541	pus3	67	42.025	Pygocentrus_nattereri
YFL001W	DEG1	71	44.311	ENSRNOG00000012994	Pus3	67	44.311	Rattus_norvegicus
YFL001W	DEG1	70	43.505	ENSRBIG00000044456	PUS3	66	43.807	Rhinopithecus_bieti
YFL001W	DEG1	71	43.582	ENSRROG00000035245	PUS3	67	43.881	Rhinopithecus_roxellana
YFL001W	DEG1	73	43.109	ENSSBOG00000022433	PUS3	69	43.109	Saimiri_boliviensis_boliviensis
YFL001W	DEG1	71	45.428	ENSSHAG00000001382	PUS3	68	45.428	Sarcophilus_harrisii
YFL001W	DEG1	74	38.418	ENSSFOG00015004850	pus3	79	37.368	Scleropages_formosus
YFL001W	DEG1	62	43.243	ENSSMAG00000020340	pus3	71	40.922	Scophthalmus_maximus
YFL001W	DEG1	62	43.243	ENSSDUG00000020825	pus3	63	43.226	Seriola_dumerili
YFL001W	DEG1	64	43.131	ENSSLDG00000019932	pus3	64	43.131	Seriola_lalandi_dorsalis
YFL001W	DEG1	67	41.987	ENSSARG00000013826	PUS3	96	41.987	Sorex_araneus
YFL001W	DEG1	71	41.791	ENSSPUG00000001412	PUS3	67	41.791	Sphenodon_punctatus
YFL001W	DEG1	80	38.770	ENSSPAG00000019221	pus3	80	38.978	Stegastes_partitus
YFL001W	DEG1	71	44.611	ENSSSCG00000015222	PUS3	67	44.611	Sus_scrofa
YFL001W	DEG1	85	38.776	ENSTGUG00000000778	-	85	38.776	Taeniopygia_guttata
YFL001W	DEG1	63	43.709	ENSTRUG00000013050	pus3	65	43.709	Takifugu_rubripes
YFL001W	DEG1	72	40.762	ENSTNIG00000004929	PUS3	73	40.762	Tetraodon_nigroviridis
YFL001W	DEG1	64	41.447	ENSTNIG00000010307	pus3	72	41.447	Tetraodon_nigroviridis
YFL001W	DEG1	71	43.750	ENSTBEG00000004382	PUS3	71	43.750	Tupaia_belangeri
YFL001W	DEG1	71	43.544	ENSTTRG00000012167	PUS3	67	43.713	Tursiops_truncatus
YFL001W	DEG1	71	43.284	ENSUAMG00000009297	PUS3	67	43.284	Ursus_americanus
YFL001W	DEG1	71	43.582	ENSUMAG00000001795	PUS3	67	43.582	Ursus_maritimus
YFL001W	DEG1	71	42.687	ENSVPAG00000001495	PUS3	67	42.687	Vicugna_pacos
YFL001W	DEG1	71	43.195	ENSVVUG00000020152	PUS3	67	43.195	Vulpes_vulpes
YFL001W	DEG1	63	44.483	ENSXETG00000024532	pus3	54	44.483	Xenopus_tropicalis
YFL001W	DEG1	58	44.604	ENSXMAG00000025077	pus3	63	44.604	Xiphophorus_maculatus
YFL001W	DEG1	68	37.654	ENSXMAG00000025146	pus3	99	37.654	Xiphophorus_maculatus
YFL001W	DEG1	53	43.359	ENSXMAG00000028945	pus3	84	43.359	Xiphophorus_maculatus
YFL001W	DEG1	58	44.444	ENSXMAG00000029934	pus3	64	44.444	Xiphophorus_maculatus
YFL001W	DEG1	71	41.964	ENSXMAG00000028016	pus3	72	41.964	Xiphophorus_maculatus