EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: YFL002C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: Putative ATP-dependent RNA helicase%3B nucleolar protein required for synthesis of 60S ribosomal subunits at a late step in the pathway%3B sediments with 66S pre-ribosomes in sucrose gradients
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: putative
Strand: Minus strand
Length: 1821 bases
Position: chrVI:145114-146934
Accession: S000001894
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YFL002C_mRNA	DEAD	PF00270.29	6.2e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YFL002C_mRNA	-	1821	-	YFL002C_mRNA	606 (aa)	-	P25808

Gene Model

Click here to download YFL002C's gene model file

Protein-Protein Interaction (PPI)

Clik here to download YFL002C's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YFL002C	-	58	32.386	YJL138C	TIF2	82	32.479
YFL002C	-	60	33.515	YHR065C	-	68	33.515
YFL002C	-	74	31.360	YJL033W	HCA4	56	31.360
YFL002C	-	60	31.635	YGL171W	-	59	32.402
YFL002C	-	62	31.316	YDR021W	-	88	31.316
YFL002C	-	74	33.406	YMR290C	-	86	33.406
YFL002C	-	61	30.809	YOR046C	DBP5	72	30.809
YFL002C	-	59	31.831	YDL160C	-	65	31.831
YFL002C	-	58	32.386	YKR059W	TIF1	82	32.479
YFL002C	-	58	32.320	YGL078C	-	65	32.320

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YFL002C	-	88	39.455	ENSG00000111364	DDX55	91	40.659	Homo_sapiens
YFL002C	-	97	35.430	ENSAPOG00000013126	ddx55	94	36.318	Acanthochromis_polyacanthus
YFL002C	-	88	39.234	ENSAMEG00000015274	DDX55	89	38.339	Ailuropoda_melanoleuca
YFL002C	-	97	37.336	ENSACIG00000007580	ddx55	91	37.871	Amphilophus_citrinellus
YFL002C	-	97	35.526	ENSAOCG00000012037	ddx55	88	36.318	Amphiprion_ocellaris
YFL002C	-	88	37.226	ENSAPEG00000011003	ddx55	84	37.011	Amphiprion_percula
YFL002C	-	98	35.574	ENSATEG00000004029	ddx55	89	36.796	Anabas_testudineus
YFL002C	-	78	38.066	ENSAPLG00000015032	DDX55	82	38.066	Anas_platyrhynchos
YFL002C	-	88	37.636	ENSACAG00000015296	DDX55	89	37.368	Anolis_carolinensis
YFL002C	-	88	34.137	ENSANAG00000034064	DDX55	87	34.054	Aotus_nancymaae
YFL002C	-	97	37.748	ENSACLG00000024691	ddx55	91	38.394	Astatotilapia_calliptera
YFL002C	-	87	36.563	ENSAMXG00000019947	ddx55	88	36.460	Astyanax_mexicanus
YFL002C	-	88	40.217	ENSBTAG00000007266	DDX55	88	38.448	Bos_taurus
YFL002C	-	95	33.841	WBGene00013983	ZK512.2	83	34.292	Caenorhabditis_elegans
YFL002C	-	88	39.273	ENSCJAG00000020471	-	89	39.261	Callithrix_jacchus
YFL002C	-	88	38.798	ENSCAFG00000007452	DDX55	88	38.204	Canis_familiaris
YFL002C	-	88	38.980	ENSCAFG00020015254	DDX55	95	38.204	Canis_lupus_dingo
YFL002C	-	88	40.217	ENSCHIG00000020402	DDX55	89	39.789	Capra_hircus
YFL002C	-	88	40.000	ENSTSYG00000007427	DDX55	89	39.437	Carlito_syrichta
YFL002C	-	89	39.606	ENSCAPG00000005124	DDX55	86	39.372	Cavia_aperea
YFL002C	-	93	39.451	ENSCPOG00000010015	DDX55	99	37.660	Cavia_porcellus
YFL002C	-	83	39.922	ENSCCAG00000021652	DDX55	92	39.478	Cebus_capucinus
YFL002C	-	88	38.657	ENSCATG00000034315	DDX55	89	38.313	Cercocebus_atys
YFL002C	-	88	39.162	ENSCLAG00000011203	DDX55	89	39.330	Chinchilla_lanigera
YFL002C	-	88	39.636	ENSCSAG00000002057	DDX55	89	39.437	Chlorocebus_sabaeus
YFL002C	-	88	37.591	ENSCPBG00000025960	DDX55	98	37.102	Chrysemys_picta_bellii
YFL002C	-	87	37.937	ENSCING00000009622	-	90	36.590	Ciona_intestinalis
YFL002C	-	85	39.773	ENSCSAVG00000003375	-	94	37.662	Ciona_savignyi
YFL002C	-	88	39.818	ENSCANG00000000156	DDX55	89	39.613	Colobus_angolensis_palliatus
YFL002C	-	88	38.727	ENSCGRG00001001652	Ddx55	89	38.070	Cricetulus_griseus_chok1gshd
YFL002C	-	88	38.727	ENSCGRG00000014742	Ddx55	89	38.070	Cricetulus_griseus_crigri
YFL002C	-	88	36.612	ENSCSEG00000012161	ddx55	89	36.429	Cynoglossus_semilaevis
YFL002C	-	88	37.818	ENSCVAG00000006635	ddx55	90	37.968	Cyprinodon_variegatus
YFL002C	-	88	38.545	ENSDARG00000009864	ddx55	91	38.194	Danio_rerio
YFL002C	-	88	39.383	ENSDNOG00000005167	DDX55	88	38.986	Dasypus_novemcinctus
YFL002C	-	87	35.507	FBgn0037561	CG9630	87	35.524	Drosophila_melanogaster
YFL002C	-	69	52.273	ENSETEG00000001826	DDX55	79	52.273	Echinops_telfairi
YFL002C	-	84	37.044	ENSEBUG00000007071	ddx55	82	37.044	Eptatretus_burgeri
YFL002C	-	88	39.599	ENSEASG00005012650	DDX55	92	40.208	Equus_asinus_asinus
YFL002C	-	88	40.364	ENSECAG00000011237	DDX55	86	40.000	Equus_caballus
YFL002C	-	75	43.810	ENSEEUG00000006313	DDX55	76	43.396	Erinaceus_europaeus
YFL002C	-	91	38.801	ENSELUG00000002616	ddx55	88	38.801	Esox_lucius
YFL002C	-	88	39.599	ENSFCAG00000003770	DDX55	89	39.437	Felis_catus
YFL002C	-	88	38.321	ENSFALG00000009300	DDX55	89	37.809	Ficedula_albicollis
YFL002C	-	99	37.660	ENSFDAG00000004680	DDX55	98	37.803	Fukomys_damarensis
YFL002C	-	87	38.139	ENSFHEG00000007912	ddx55	90	38.571	Fundulus_heteroclitus
YFL002C	-	88	36.430	ENSGMOG00000017762	ddx55	90	36.252	Gadus_morhua
YFL002C	-	94	37.521	ENSGALG00000003298	DDX55	90	37.522	Gallus_gallus
YFL002C	-	88	38.475	ENSGAFG00000004388	ddx55	90	38.612	Gambusia_affinis
YFL002C	-	89	37.726	ENSGACG00000015591	ddx55	88	37.716	Gasterosteus_aculeatus
YFL002C	-	88	36.679	ENSGAGG00000014403	DDX55	98	36.042	Gopherus_agassizii
YFL002C	-	88	39.636	ENSGGOG00000026102	DDX55	89	39.437	Gorilla_gorilla
YFL002C	-	97	37.748	ENSHBUG00000011523	ddx55	91	38.394	Haplochromis_burtoni
YFL002C	-	98	38.126	ENSHGLG00000019202	DDX55	97	38.149	Heterocephalus_glaber_female
YFL002C	-	98	38.126	ENSHGLG00100019440	DDX55	97	38.149	Heterocephalus_glaber_male
YFL002C	-	88	34.128	ENSHCOG00000004710	ddx55	90	33.922	Hippocampus_comes
YFL002C	-	93	38.291	ENSIPUG00000014551	ddx55	88	38.475	Ictalurus_punctatus
YFL002C	-	99	37.061	ENSSTOG00000006121	DDX55	89	39.405	Ictidomys_tridecemlineatus
YFL002C	-	88	38.727	ENSJJAG00000013401	Ddx55	89	38.693	Jaculus_jaculus
YFL002C	-	92	38.394	ENSKMAG00000022006	ddx55	90	38.313	Kryptolebias_marmoratus
YFL002C	-	92	37.544	ENSLBEG00000021815	ddx55	89	37.544	Labrus_bergylta
YFL002C	-	88	37.112	ENSLACG00000017050	DDX55	87	37.004	Latimeria_chalumnae
YFL002C	-	93	37.221	ENSLOCG00000005828	ddx55	89	37.456	Lepisosteus_oculatus
YFL002C	-	88	39.781	ENSLAFG00000007293	DDX55	89	39.016	Loxodonta_africana
YFL002C	-	88	39.781	ENSMFAG00000038165	DDX55	89	39.576	Macaca_fascicularis
YFL002C	-	88	39.818	ENSMMUG00000013178	DDX55	89	39.613	Macaca_mulatta
YFL002C	-	88	39.636	ENSMNEG00000028630	DDX55	89	39.437	Macaca_nemestrina
YFL002C	-	88	39.818	ENSMLEG00000039187	DDX55	89	39.613	Mandrillus_leucophaeus
YFL002C	-	88	37.316	ENSMAMG00000011297	ddx55	89	36.972	Mastacembelus_armatus
YFL002C	-	97	37.748	ENSMZEG00005008047	ddx55	91	38.394	Maylandia_zebra
YFL002C	-	94	35.654	ENSMGAG00000003185	DDX55	89	35.752	Meleagris_gallopavo
YFL002C	-	88	39.051	ENSMAUG00000020054	Ddx55	89	39.085	Mesocricetus_auratus
YFL002C	-	88	36.679	ENSMICG00000006477	DDX55	88	36.396	Microcebus_murinus
YFL002C	-	88	38.686	ENSMOCG00000021289	Ddx55	89	38.664	Microtus_ochrogaster
YFL002C	-	88	36.976	ENSMMOG00000009411	ddx55	89	36.555	Mola_mola
YFL002C	-	83	38.846	ENSMODG00000012519	DDX55	88	38.603	Monodelphis_domestica
YFL002C	-	88	34.191	ENSMALG00000018543	ddx55	88	34.331	Monopterus_albus
YFL002C	-	73	40.175	MGP_CAROLIEiJ_G0027755	-	98	40.175	Mus_caroli
YFL002C	-	88	39.455	ENSMUSG00000029389	Ddx55	89	39.405	Mus_musculus
YFL002C	-	88	38.182	MGP_PahariEiJ_G0024335	Ddx55	89	38.179	Mus_pahari
YFL002C	-	88	39.855	MGP_SPRETEiJ_G0028753	Ddx55	89	39.580	Mus_spretus
YFL002C	-	99	35.474	ENSMPUG00000001505	DDX55	88	36.477	Mustela_putorius_furo
YFL002C	-	88	34.846	ENSMLUG00000025148	-	98	34.441	Myotis_lucifugus
YFL002C	-	79	37.097	ENSMLUG00000001265	-	82	36.557	Myotis_lucifugus
YFL002C	-	95	38.462	ENSNGAG00000020564	Ddx55	89	39.085	Nannospalax_galili
YFL002C	-	97	37.748	ENSNBRG00000018748	ddx55	91	38.394	Neolamprologus_brichardi
YFL002C	-	88	39.636	ENSNLEG00000001658	DDX55	89	39.437	Nomascus_leucogenys
YFL002C	-	88	38.095	ENSMEUG00000013689	DDX55	89	37.895	Notamacropus_eugenii
YFL002C	-	88	39.273	ENSOPRG00000000850	DDX55	90	38.927	Ochotona_princeps
YFL002C	-	99	37.198	ENSODEG00000009632	-	98	37.152	Octodon_degus
YFL002C	-	82	36.492	ENSODEG00000016592	-	88	36.364	Octodon_degus
YFL002C	-	97	37.748	ENSONIG00000015311	ddx55	88	38.394	Oreochromis_niloticus
YFL002C	-	83	38.654	ENSOANG00000015332	DDX55	89	38.104	Ornithorhynchus_anatinus
YFL002C	-	88	38.686	ENSOCUG00000003456	DDX55	90	38.715	Oryctolagus_cuniculus
YFL002C	-	89	37.477	ENSORLG00000029482	ddx55	92	37.306	Oryzias_latipes
YFL002C	-	89	37.477	ENSORLG00015004885	ddx55	98	37.329	Oryzias_latipes_hsok
YFL002C	-	89	37.410	ENSOMEG00000023619	ddx55	91	37.128	Oryzias_melastigma
YFL002C	-	88	39.305	ENSOGAG00000009195	DDX55	88	38.761	Otolemur_garnettii
YFL002C	-	88	40.036	ENSOARG00000003364	DDX55	89	39.613	Ovis_aries
YFL002C	-	88	39.455	ENSPPAG00000005988	DDX55	89	39.261	Pan_paniscus
YFL002C	-	88	39.636	ENSPPRG00000012157	DDX55	89	39.261	Panthera_pardus
YFL002C	-	83	39.464	ENSPTIG00000011490	DDX55	84	39.074	Panthera_tigris_altaica
YFL002C	-	88	39.455	ENSPTRG00000005601	DDX55	89	39.261	Pan_troglodytes
YFL002C	-	88	39.818	ENSPANG00000007905	DDX55	89	39.613	Papio_anubis
YFL002C	-	94	38.291	ENSPKIG00000023661	ddx55	91	38.261	Paramormyrops_kingsleyae
YFL002C	-	91	35.294	ENSPSIG00000012901	DDX55	98	34.896	Pelodiscus_sinensis
YFL002C	-	84	38.123	ENSPMGG00000017224	ddx55	98	37.500	Periophthalmus_magnuspinnatus
YFL002C	-	88	39.051	ENSPEMG00000018052	Ddx55	89	39.229	Peromyscus_maniculatus_bairdii
YFL002C	-	74	35.065	ENSPMAG00000007486	ddx55	93	33.918	Petromyzon_marinus
YFL002C	-	84	39.006	ENSPCIG00000010973	DDX55	96	38.407	Phascolarctos_cinereus
YFL002C	-	88	38.156	ENSPFOG00000006970	ddx55	83	38.121	Poecilia_formosa
YFL002C	-	88	38.113	ENSPLAG00000014735	ddx55	90	38.078	Poecilia_latipinna
YFL002C	-	88	38.113	ENSPMEG00000020635	ddx55	90	38.078	Poecilia_mexicana
YFL002C	-	88	37.750	ENSPREG00000016644	ddx55	95	35.750	Poecilia_reticulata
YFL002C	-	88	39.636	ENSPPYG00000005091	DDX55	91	39.547	Pongo_abelii
YFL002C	-	88	38.949	ENSPCAG00000014127	DDX55	90	38.676	Procavia_capensis
YFL002C	-	88	39.781	ENSPCOG00000011189	DDX55	89	39.399	Propithecus_coquereli
YFL002C	-	87	38.561	ENSPVAG00000015321	DDX55	89	38.204	Pteropus_vampyrus
YFL002C	-	97	37.583	ENSPNYG00000003669	ddx55	91	38.220	Pundamilia_nyererei
YFL002C	-	93	37.414	ENSPNAG00000012855	ddx55	82	38.623	Pygocentrus_nattereri
YFL002C	-	88	39.416	ENSRNOG00000001043	Ddx55	89	39.367	Rattus_norvegicus
YFL002C	-	88	39.818	ENSRBIG00000044699	DDX55	89	39.437	Rhinopithecus_bieti
YFL002C	-	88	40.000	ENSRROG00000024824	DDX55	89	39.789	Rhinopithecus_roxellana
YFL002C	-	82	40.194	ENSSBOG00000024833	DDX55	92	39.826	Saimiri_boliviensis_boliviensis
YFL002C	-	83	39.155	ENSSHAG00000015820	DDX55	90	38.674	Sarcophilus_harrisii
YFL002C	-	92	38.261	ENSSFOG00015017496	ddx55	88	37.961	Scleropages_formosus
YFL002C	-	88	37.681	ENSSMAG00000010441	ddx55	89	37.631	Scophthalmus_maximus
YFL002C	-	97	36.439	ENSSDUG00000023568	ddx55	89	37.018	Seriola_dumerili
YFL002C	-	97	33.444	ENSSLDG00000011299	ddx55	88	33.860	Seriola_lalandi_dorsalis
YFL002C	-	83	39.080	ENSSARG00000003842	DDX55	88	38.447	Sorex_araneus
YFL002C	-	98	35.113	ENSSPUG00000012798	DDX55	89	36.219	Sphenodon_punctatus
YFL002C	-	88	37.226	ENSSPAG00000011806	ddx55	88	36.945	Stegastes_partitus
YFL002C	-	88	39.818	ENSSSCG00000009771	DDX55	97	39.478	Sus_scrofa
YFL002C	-	87	38.122	ENSTGUG00000005302	-	90	37.852	Taeniopygia_guttata
YFL002C	-	90	37.589	ENSTRUG00000018525	ddx55	90	37.478	Takifugu_rubripes
YFL002C	-	90	37.345	ENSTNIG00000013515	DDX55	88	37.367	Tetraodon_nigroviridis
YFL002C	-	73	36.623	ENSTBEG00000010822	DDX55	98	36.623	Tupaia_belangeri
YFL002C	-	88	39.891	ENSTTRG00000007251	DDX55	88	39.572	Tursiops_truncatus
YFL002C	-	88	39.234	ENSUAMG00000012589	DDX55	89	38.908	Ursus_americanus
YFL002C	-	82	39.139	ENSUMAG00000003869	DDX55	89	38.795	Ursus_maritimus
YFL002C	-	82	37.037	ENSVPAG00000007028	DDX55	89	36.517	Vicugna_pacos
YFL002C	-	88	38.909	ENSVVUG00000027506	DDX55	91	39.583	Vulpes_vulpes
YFL002C	-	88	37.774	ENSXETG00000005825	ddx55	90	37.303	Xenopus_tropicalis
YFL002C	-	88	38.251	ENSXCOG00000010120	ddx55	90	38.571	Xiphophorus_couchianus
YFL002C	-	88	38.113	ENSXMAG00000011731	ddx55	90	38.434	Xiphophorus_maculatus