EuRBPDB

Description

Ensembl ID: YFL005W (Gene tree)
Gene ID: -
Gene Symbol: SEC4
Alias: SRO6
Full Name: Rab family GTPase%3B essential for vesicle-mediated exocytic secretion and autophagy%3B associates with the exocyst component Sec15p and may regulate polarized delivery of transport vesicles to the exocyst at the plasma membrane
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 648 bases
Position: chrVI:130334-130981
Accession: S000001889
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YFL005W_mRNA	MMR_HSR1	PF01926.23	6.2e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YFL005W_mRNA	-	648	-	YFL005W_mRNA	215 (aa)	-	P07560

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YFL005W	SEC4	95	38.140	YLR262C	-	81	42.857
YFL005W	SEC4	94	41.667	YGL210W	-	82	44.262
YFL005W	SEC4	74	37.126	YNL093W	-	76	37.126
YFL005W	SEC4	78	43.503	YML001W	YPT7	86	43.258
YFL005W	SEC4	91	37.129	YOR089C	VPS21	78	41.463
YFL005W	SEC4	91	31.169	YKR014C	-	90	31.429
YFL005W	SEC4	82	44.068	YER031C	YPT31	79	44.068
YFL005W	SEC4	88	34.146	YBR264C	-	83	33.529
YFL005W	SEC4	80	34.054	YCR027C	RHB1	88	34.054

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YFL005W	SEC4	78	44.311	ENSCING00000006139	-	79	44.311	Ciona_intestinalis
YFL005W	SEC4	75	52.147	ENSCING00000009535	-	79	52.147	Ciona_intestinalis
YFL005W	SEC4	78	45.509	ENSCSAVG00000010245	-	60	45.509	Ciona_savignyi