EuRBPDB

Description

Ensembl ID: YFL017W-A (Gene tree)
Gene ID: -
Gene Symbol: SMX2
Alias: SNP2|YFL018W-A
Full Name: Core Sm protein Sm G%3B part of heteroheptameric complex (with Smb1p%2C Smd1p%2C Smd2p%2C Smd3p%2C Sme1p%2C and Smx3p) that is part of the spliceosomal U1%2C U2%2C U4%2C and U5 snRNPs%3B homolog of human Sm G
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 234 bases
Position: chrVI:103699-103932
Accession: S000002965
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YFL017W-A_mRNA	LSM	PF01423.22	3.2e-18	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YFL017W-A_mRNA	-	234	-	YFL017W-A_mRNA	77 (aa)	-	P40204

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YFL017W-A	SMX2	92	40.000	YNL147W	-	69	40.000
YFL017W-A	SMX2	66	35.849	YER146W	-	57	35.849

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YFL017W-A	SMX2	95	52.055	WBGene00004920	snr-7	91	52.055	Caenorhabditis_elegans
YFL017W-A	SMX2	87	44.776	ENSSLDG00000004364	-	88	44.776	Seriola_lalandi_dorsalis