EuRBPDB

Description

Ensembl ID: YFL034C-A (Gene tree)
Gene ID: -
Gene Symbol: RPL22B
Alias: YFL035C-B
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 690
Position: chrVI:64243-64932
Accession: S000006436
RBP type: canonical RBP
Summary: Ribosomal 60S subunit protein L22A%3B required for translation of long 5' UTR of IME1 mRNA and meiotic entry%3B homologous to mammalian ribosomal protein L22%2C no bacterial homolog%3B RPL22B has a paralog%2C RPL22A%2C that arose from the whole genome duplication

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YFL034C-A_mRNA	Ribosomal_L22e	PF01776.17	7.2e-38	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YFL034C-A_mRNA	-	369	-	YFL034C-A_mRNA	122 (aa)	-	P56628

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YFL034C-A	RPL22B	92	85.714	YLR061W	RPL22A	93	85.714

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YFL034C-A	RPL22B	98	39.669	WBGene00004434	rpl-22	85	40.541	Caenorhabditis_elegans
YFL034C-A	RPL22B	70	41.379	ENSEBUG00000012931	-	91	41.379	Eptatretus_burgeri
YFL034C-A	RPL22B	87	44.340	ENSSLDG00000005943	-	89	44.144	Seriola_lalandi_dorsalis