EuRBPDB

Description

Ensembl ID: YGL048C (Gene tree)
Gene ID: -
Gene Symbol: RPT6
Alias: CIM3|CRL3|SCB68|SUG1
Full Name: ATPase of the 19S regulatory particle of the 26S proteasome%3B one of six ATPases of the regulatory particle%3B involved in the degradation of ubiquitinated substrates%3B bound by ubiquitin-protein ligases Ubr1p and Ufd4p%3B localized mainly to the nucleus throughout the cell cycle%3B protein abundance increases in response to DNA replication stress
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: putative
Strand: Minus strand
Length: 1218
Position: chrVII: 410069-411286
Accession: S000003016
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YGL048C_mRNA	-	1218	-	YGL048C_mRNA	405 (aa)	-	Q01939

Gene Model

Protein-Protein Interaction (PPI)

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YGL048C	RPT6	82	51.045	WBGene00004501	rpt-1	77	51.045	Caenorhabditis_elegans
YGL048C	RPT6	80	49.693	WBGene00004502	rpt-2	74	49.693	Caenorhabditis_elegans
YGL048C	RPT6	83	44.478	WBGene00004503	rpt-3	81	44.478	Caenorhabditis_elegans
YGL048C	RPT6	96	76.607	ENSG00000087191	PSMC5	98	76.607	Homo_sapiens
YGL048C	RPT6	80	51.235	ENSG00000100764	PSMC1	99	62.651	Homo_sapiens
YGL048C	RPT6	82	51.045	ENSG00000161057	PSMC2	84	51.045	Homo_sapiens
YGL048C	RPT6	95	43.377	ENSG00000100519	PSMC6	96	51.562	Homo_sapiens
YGL048C	RPT6	81	47.463	ENSG00000165916	PSMC3	94	38.956	Homo_sapiens
YGL048C	RPT6	80	49.693	YDL007W	RPT2	75	49.693	Saccharomyces_cerevisiae
YGL048C	RPT6	76	51.780	YKL145W	RPT1	67	51.768	Saccharomyces_cerevisiae
YGL048C	RPT6	94	41.902	YDR394W	RPT3	88	41.902	Saccharomyces_cerevisiae