EuRBPDB

Description

Ensembl ID: YGL078C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: RNA-Dependent ATPase%2C member of DExD/H-box family%3B involved in cleavage of site A3 within the ITS1 spacer during rRNA processing%3B not essential for growth%2C but deletion causes severe slow-growth phenotype
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1572 bases
Position: chrVII:360288-361859
Accession: S000003046
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YGL078C_mRNA	ResIII	PF04851.15	3.1e-10	1	1
YGL078C_mRNA	DEAD	PF00270.29	4.4e-54	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YGL078C_mRNA	-	1572	-	YGL078C_mRNA	523 (aa)	-	P20447

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YGL078C	-	66	34.048	YDR194C	-	56	34.048
YGL078C	-	83	38.938	YOR204W	DED1	68	40.095
YGL078C	-	80	44.706	YNL112W	-	79	43.964
YGL078C	-	63	32.432	YJL138C	TIF2	87	33.051
YGL078C	-	64	36.842	YDR243C	-	60	36.842
YGL078C	-	66	30.812	YOR046C	DBP5	71	30.812
YGL078C	-	65	32.320	YFL002C	-	58	32.320
YGL078C	-	72	41.814	YPL119C	DBP1	70	39.636
YGL078C	-	65	36.657	YHR065C	-	66	36.657
YGL078C	-	74	33.501	YGL171W	-	69	33.753
YGL078C	-	64	31.287	YDL084W	-	75	31.287
YGL078C	-	63	32.432	YKR059W	TIF1	87	33.051
YGL078C	-	64	31.250	YBR142W	-	59	30.652
YGL078C	-	71	35.171	YMR290C	-	73	35.171
YGL078C	-	64	35.000	YDR021W	-	83	35.000
YGL078C	-	64	33.994	YHR169W	-	79	33.994
YGL078C	-	64	34.024	YDL160C	-	65	34.024