EuRBPDB

Description

Ensembl ID: YGL120C (Gene tree)
Gene ID: -
Gene Symbol: PRP43
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 2304
Position: chrVII:281634-283937
Accession: S000003088
RBP type: canonical RBP
Summary: RNA helicase in the DEAH-box family%3B functions in both RNA polymerase I and polymerase II transcript metabolism%3B catalyzes removal of U2%2C U5%2C and U6 snRNPs from the postsplicing lariat-intron ribonucleoprotein complex%3B required for efficient biogenesis of both small- and large-subunit rRNAs%3B acts with Sqs1p to promote 20S to 18S rRNA processing catalyzed by endonuclease Nob1p

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YGL120C_mRNA	DEAD	PF00270.29	2.3e-10	1	1
YGL120C_mRNA	HA2	PF04408.23	2.5e-23	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	MS & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YGL120C_mRNA	-	2304	-	YGL120C_mRNA	767 (aa)	-	P53131

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YGL120C	PRP43	85	40.444	YKL078W	-	90	40.741
YGL120C	PRP43	84	43.091	YNR011C	PRP2	74	43.091
YGL120C	PRP43	89	43.822	YKR086W	PRP16	63	43.822
YGL120C	PRP43	83	50.000	YER013W	-	54	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YGL120C	PRP43	88	33.381	ENSCING00000016347	-	94	33.381	Ciona_intestinalis
YGL120C	PRP43	89	64.035	ENSLBEG00000021832	-	90	64.035	Labrus_bergylta
YGL120C	PRP43	89	65.205	ENSXMAG00000005714	-	90	65.205	Xiphophorus_maculatus