EuRBPDB

Description

Ensembl ID: YGL122C (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Minus strand
Length: 1578
Position: chrVII:278946-280523
Accession: S000003090
RBP type: canonical RBP
Summary: Nuclear polyadenylated RNA-binding protein%3B required for nuclear mRNA export and poly(A) tail length control%3B stimulates RNA polymerase III transcription by enhancing TFIIIB binding to promoters%3B protects mRNA against decay by the nuclear exosome in a poly(A)-tail-dependent manner%3B involved in forming export-competent mRNPs in the nucleus%3B autoregulates mRNA levels%3B NLS binds Kap104p%3B protein abundance increases under DNA replication stress%3B related to human hnRNPs

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YGL122C_mRNA	zf-CCCH_2	PF14608.6	2.2e-20	1	4
YGL122C_mRNA	zf-CCCH_2	PF14608.6	2.2e-20	2	4
YGL122C_mRNA	zf-CCCH_2	PF14608.6	2.2e-20	3	4
YGL122C_mRNA	zf-CCCH_2	PF14608.6	2.2e-20	4	4
YGL122C_mRNA	Nab2	PF11517.8	2.7e-49	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
26632259	The RNA-binding proteomes from yeast to man harbour conserved enigmRBPs	RIC.PAR_CL & yeast	2015 Dec 3	Beckmann BM	DOI: 10.1038/ncomms10127
26595419	Conserved mRNA-binding proteomes in eukaryotic organisms	mRBPome & yeast	2015 Nov 23	Matia Gonzalez AM	DOI: 10.1038/nsmb.3128
23222640	Global analysis of yeast mRNPs	IC & yeast	2012 Dec 9	Mitchell SF	DOI: 10.1038/nsmb.2468
21124907	A screen for RNA binding proteins in yeast indicates dual functions for many enzymes	ProtoArray & yeast	2010 Nov 11	DOI: 10.1371/journal.pone.0015499

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YGL122C_mRNA	-	1578	-	YGL122C_mRNA	525 (aa)	-	P32505

Gene Model

Protein-Protein Interaction (PPI)