EuRBPDB

Description

Ensembl ID: YGL135W (Gene tree)
Gene ID: -
Gene Symbol: RPL1B
Alias: SSM1|SSM2
Full Name: Ribosomal 60S subunit protein L1B%3B N-terminally acetylated%3B homologous to mammalian ribosomal protein L10A and bacterial L1%3B RPL1B has a paralog%2C RPL1A%2C that arose from the whole genome duplication%3B rpl1a rpl1b double null mutation is lethal
Gene Type: protein_coding
Species: Saccharomyces_cerevisiae
Status: confidence
Strand: Plus strand
Length: 654 bases
Position: chrVII:254641-255294
Accession: S000003103
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
YGL135W_mRNA	Ribosomal_L1	PF00687.21	8.5e-42	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
25173706	Photo-cross-linking and high-resolution mass spectrometry for assignment of RNA-binding sites in RNA-binding proteins	RNPxl & yeast	2014 Aug 31	Kramer K	DOI: 10.1038/nmeth.3092
20844764	Proteome-wide search reveals unexpected RNA binding proteins in Saccharomyces cerevisiae	BioRadArray & yeast	2010 Sep 10	Tsvetanova NG	DOI: 10.1371/journal.pone.0012671

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
YGL135W_mRNA	-	654	-	YGL135W_mRNA	217 (aa)	-	P0CX43

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
YGL135W	RPL1B	100	100.000	YPL220W	RPL1A	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
YGL135W	RPL1B	100	59.908	WBGene00004412	rpl-1	100	60.000	Caenorhabditis_elegans
YGL135W	RPL1B	100	47.926	FBgn0038281	RpL10Aa	99	47.926	Drosophila_melanogaster
YGL135W	RPL1B	100	59.447	ENSSLDG00000000813	-	100	59.447	Seriola_lalandi_dorsalis